BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804972.2.1
(1311 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DQ056491.1| Arabidopsis thaliana putative cinnamyl-alcoh... 46 0.015
ref|NM_104019.2| Arabidopsis thaliana alcohol dehydrogenase... 46 0.015
gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BA... 44 0.061
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 44 0.061
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 44 0.061
emb|BX945616.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.24
emb|CR358501.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.24
gb|H37170.1|H37170 15299 Lambda-PRL2 Arabidopsis thaliana c... 42 0.24
gb|BE524850.1|BE524850 M55A8STM Arabidopsis developing seed... 42 0.24
gb|BE526751.1|BE526751 M66C18STM Arabidopsis developing see... 42 0.24
gb|AV824228.1|AV824228 AV824228 RAFL6 Arabidopsis thaliana ... 42 0.24
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 42 0.24
gb|AY090369.1| Arabidopsis thaliana At1g09490/F14J9_15 mRNA... 42 0.24
gb|AY122900.1| Arabidopsis thaliana At1g09490/F14J9_15 mRNA... 42 0.24
emb|AX651455.1| Sequence 251 from Patent WO03000898 42 0.24
gb|AY087161.1| Arabidopsis thaliana clone 32366 mRNA, compl... 42 0.24
gb|AC003970.1| Arabidopsis thaliana chromosome I BAC F14J9 ... 42 0.24
emb|BX816615.1|CNS0AAHB Arabidopsis thaliana Full-length cD... 42 0.24
ref|NM_100820.2| Arabidopsis thaliana alcohol dehydrogenase... 42 0.24
ref|NM_100819.2| Arabidopsis thaliana alcohol dehydrogenase... 42 0.24
>gb|DQ056491.1| Arabidopsis thaliana putative cinnamyl-alcohol dehydrogenase
(At1g51410) mRNA, complete cds
Length = 978
Score = 46.1 bits (23), Expect = 0.015
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 381 gtcaaggatgctaaggcagagttacttgacccagcagttaagggaacactcaatgttct 439
|||||||| || |||| ||||||||||| || ||||| || |||||| ||||||||||
Sbjct: 277 gtcaaggaccctcaggctgagttacttgatccggcagtgaaaggaacaatcaatgttct 335
>ref|NM_104019.2| Arabidopsis thaliana alcohol dehydrogenase AT1G51410 mRNA, complete
cds
Length = 978
Score = 46.1 bits (23), Expect = 0.015
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 381 gtcaaggatgctaaggcagagttacttgacccagcagttaagggaacactcaatgttct 439
|||||||| || |||| ||||||||||| || ||||| || |||||| ||||||||||
Sbjct: 277 gtcaaggaccctcaggctgagttacttgatccggcagtgaaaggaacaatcaatgttct 335
>gb|AC024261.6|AC024261 Arabidopsis thaliana chromosome 1 BAC F5D21 genomic sequence, complete
sequence
Length = 92652
Score = 44.1 bits (22), Expect = 0.061
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 394 aggcagagttacttgacccagcagttaagggaacactcaatgttct 439
|||| ||||||||||| || ||||| || |||||| ||||||||||
Sbjct: 80267 aggctgagttacttgatccggcagtgaaaggaacaatcaatgttct 80222
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 44.1 bits (22), Expect = 0.061
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 394 aggcagagttacttgacccagcagttaagggaacactcaatgttct 439
|||| ||||||||||| || ||||| || |||||| ||||||||||
Sbjct: 3419743 aggctgagttacttgatccggcagtgaaaggaacaatcaatgttct 3419788
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 44.1 bits (22), Expect = 0.061
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 394 aggcagagttacttgacccagcagttaagggaacactcaatgttct 439
|||| ||||||||||| || ||||| || |||||| ||||||||||
Sbjct: 19064148 aggctgagttacttgatccggcagtgaaaggaacaatcaatgttct 19064193
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 3064189 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 3064248
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 3064249 ctcctccgtggctacaccgtc 3064269
Score = 42.1 bits (21), Expect = 0.24
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 127 tggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctcctcg 186
|||| ||||||||||| || || || ||||| ||||| |||||||||| ||| | |||
Sbjct: 3058557 tggtctgcgtcaccggagcttccggttacatagcgtcttggattgtcaagcttttgctcc 3058616
Query: 187 accgcggctacaccgtc 203
||| ||||||||||||
Sbjct: 3058617 tccgtggctacaccgtc 3058633
>emb|BX945616.1| Arabidopsis thaliana T-DNA flanking sequence GK-728B12-025113,
genomic survey sequence
Length = 521
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 109 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 168
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 169 ctcctccgtggctacaccgtc 189
>emb|CR358501.1| Arabidopsis thaliana T-DNA flanking sequence GK-728B12-025219,
genomic survey sequence
Length = 476
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 90 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 149
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 150 ctcctccgtggctacaccgtc 170
>gb|H37170.1|H37170 15299 Lambda-PRL2 Arabidopsis thaliana cDNA clone 185F10T7, mRNA
sequence
Length = 534
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 64 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 123
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 124 ctcctccgtggctacaccgtc 144
>gb|BE524850.1|BE524850 M55A8STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M55A8 5', mRNA sequence
Length = 339
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 11 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 70
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 71 ctcctccgtggctacaccgtc 91
>gb|BE526751.1|BE526751 M66C18STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600035466R1 5', mRNA sequence
Length = 262
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 3 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 62
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 63 ctcctccgtggctacaccgtc 83
>gb|AV824228.1|AV824228 AV824228 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-16-E14 5',
mRNA sequence
Length = 398
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 28 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 87
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 88 ctcctccgtggctacaccgtc 108
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 3064009 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 3064068
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 3064069 ctcctccgtggctacaccgtc 3064089
Score = 42.1 bits (21), Expect = 0.24
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 127 tggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctcctcg 186
|||| ||||||||||| || || || ||||| ||||| |||||||||| ||| | |||
Sbjct: 3058377 tggtctgcgtcaccggagcttccggttacatagcgtcttggattgtcaagcttttgctcc 3058436
Query: 187 accgcggctacaccgtc 203
||| ||||||||||||
Sbjct: 3058437 tccgtggctacaccgtc 3058453
>gb|AY090369.1| Arabidopsis thaliana At1g09490/F14J9_15 mRNA, complete cds
Length = 1053
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 27 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 86
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 87 ctcctccgtggctacaccgtc 107
>gb|AY122900.1| Arabidopsis thaliana At1g09490/F14J9_15 mRNA, complete cds
Length = 969
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 16 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 75
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 76 ctcctccgtggctacaccgtc 96
>emb|AX651455.1| Sequence 251 from Patent WO03000898
Length = 1110
Score = 42.1 bits (21), Expect = 0.24
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 127 tggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctcctcg 186
|||| ||||||||||| || || || ||||| ||||| |||||||||| ||| | |||
Sbjct: 161 tggtctgcgtcaccggagcttccggttacatagcgtcttggattgtcaagcttttgctcc 220
Query: 187 accgcggctacaccgtc 203
||| ||||||||||||
Sbjct: 221 tccgtggctacaccgtc 237
>gb|AY087161.1| Arabidopsis thaliana clone 32366 mRNA, complete sequence
Length = 1132
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 61 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 120
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 121 ctcctccgtggctacaccgtc 141
>gb|AC003970.1| Arabidopsis thaliana chromosome I BAC F14J9 genomic sequence contains
phyA marker, complete sequence
Length = 95865
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 45790 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 45849
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 45850 ctcctccgtggctacaccgtc 45870
Score = 42.1 bits (21), Expect = 0.24
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 127 tggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctcctcg 186
|||| ||||||||||| || || || ||||| ||||| |||||||||| ||| | |||
Sbjct: 40158 tggtctgcgtcaccggagcttccggttacatagcgtcttggattgtcaagcttttgctcc 40217
Query: 187 accgcggctacaccgtc 203
||| ||||||||||||
Sbjct: 40218 tccgtggctacaccgtc 40234
>emb|BX816615.1|CNS0AAHB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH59ZA11 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1614
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 40 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 99
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 100 ctcctccgtggctacaccgtc 120
>ref|NM_100820.2| Arabidopsis thaliana alcohol dehydrogenase/ cinnamyl-alcohol
dehydrogenase AT1G09490 mRNA, complete cds
Length = 1135
Score = 42.1 bits (21), Expect = 0.24
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 123 aaggtggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctc 182
|||||||| ||||| ||||| || || || ||||| ||||| |||||||||| ||| |
Sbjct: 64 aaggtggtctgcgttaccggagcttccggctacatagcgtcttggattgtcaagcttttg 123
Query: 183 ctcgaccgcggctacaccgtc 203
||| ||| ||||||||||||
Sbjct: 124 ctcctccgtggctacaccgtc 144
>ref|NM_100819.2| Arabidopsis thaliana alcohol dehydrogenase/ cinnamyl-alcohol
dehydrogenase AT1G09480 mRNA, complete cds
Length = 1110
Score = 42.1 bits (21), Expect = 0.24
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 127 tggtgtgcgtcaccggcgcatcagggtacatcgcgtcctggattgtcaggctcctcctcg 186
|||| ||||||||||| || || || ||||| ||||| |||||||||| ||| | |||
Sbjct: 161 tggtctgcgtcaccggagcttccggttacatagcgtcttggattgtcaagcttttgctcc 220
Query: 187 accgcggctacaccgtc 203
||| ||||||||||||
Sbjct: 221 tccgtggctacaccgtc 237
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 563,988
Number of Sequences: 1013581
Number of extensions: 563988
Number of successful extensions: 40366
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39431
Number of HSP's gapped (non-prelim): 935
length of query: 1311
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1291
effective length of database: 888,669,252
effective search space: 1147272004332
effective search space used: 1147272004332
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)