BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.4
(667 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU227892.1|AU227892 AU227892 RAFL15 Arabidopsis thaliana... 70 5e-010
gb|AV544917.1|AV544917 AV544917 Arabidopsis thaliana roots ... 70 5e-010
gb|AV557902.1|AV557902 AV557902 Arabidopsis thaliana green ... 70 5e-010
gb|AV561551.1|AV561551 AV561551 Arabidopsis thaliana green ... 70 5e-010
gb|AV563704.1|AV563704 AV563704 Arabidopsis thaliana green ... 70 5e-010
gb|BP643951.1|BP643951 BP643951 RAFL19 Arabidopsis thaliana... 70 5e-010
gb|AF458083.1| Arabidopsis thaliana cellulose synthase (IRX... 70 5e-010
gb|BT005710.1| Arabidopsis thaliana clone RAFL15-30-K05 (R5... 70 5e-010
gb|BT006111.1| Arabidopsis thaliana clone U50150 putative c... 70 5e-010
emb|BX833432.1|CNS09Z0L Arabidopsis thaliana Full-length cD... 70 5e-010
dbj|AB006703.1| Arabidopsis thaliana genomic DNA, chromosom... 70 5e-010
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 70 5e-010
ref|NM_123770.2| Arabidopsis thaliana CESA4 (CELLULASE SYNT... 70 5e-010
ref|NM_123771.3| Arabidopsis thaliana unknown protein AT5G4... 70 5e-010
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 70 5e-010
gb|AI994106.1|AI994106 701498975 A. thaliana, Ohio State cl... 58 2e-006
gb|AQ967081.1|AQ967081 LERIP40TF LERG Arabidopsis thaliana ... 56 8e-006
gb|AQ967082.1|AQ967082 LERIP40TR LERG Arabidopsis thaliana ... 56 8e-006
gb|BP640442.1|BP640442 BP640442 RAFL19 Arabidopsis thaliana... 56 8e-006
gb|AF267742.1|AF267742 Arabidopsis thaliana cellulose synth... 56 8e-006
gb|AQ964327.1|AQ964327 LERGV37TR LERG Arabidopsis thaliana ... 54 3e-005
gb|BH810643.1|BH810643 SALK_051007 Arabidopsis thaliana TDN... 54 3e-005
gb|BH810657.1|BH810657 SALK_051024 Arabidopsis thaliana TDN... 54 3e-005
gb|AI999519.1|AI999519 701556274 A. thaliana, Columbia Col-... 54 3e-005
gb|AC007019.5| Arabidopsis thaliana chromosome 2 clone F7D8... 54 3e-005
ref|NM_127746.1| Arabidopsis thaliana CESA9 (CELLULASE SYNT... 54 3e-005
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 54 3e-005
gb|BP647418.1|BP647418 BP647418 RAFL19 Arabidopsis thaliana... 52 1e-004
gb|B96203.1|B96203 T18H8TFB TAMU Arabidopsis thaliana genom... 50 5e-004
gb|BE038216.1|BE038216 AA10E02 AA Arabidopsis thaliana cDNA... 50 5e-004
gb|AV810887.1|AV810887 AV810887 RAFL9 Arabidopsis thaliana ... 50 5e-004
gb|AV811500.1|AV811500 AV811500 RAFL9 Arabidopsis thaliana ... 50 5e-004
gb|AV813548.1|AV813548 AV813548 RAFL9 Arabidopsis thaliana ... 50 5e-004
gb|AV816883.1|AV816883 AV816883 RAFL9 Arabidopsis thaliana ... 50 5e-004
gb|AV817718.1|AV817718 AV817718 RAFL9 Arabidopsis thaliana ... 50 5e-004
gb|AV823492.1|AV823492 AV823492 RAFL5 Arabidopsis thaliana ... 50 5e-004
gb|AV523438.1|AV523438 AV523438 Arabidopsis thaliana aboveg... 50 5e-004
gb|AV523533.1|AV523533 AV523533 Arabidopsis thaliana aboveg... 50 5e-004
gb|AV523635.1|AV523635 AV523635 Arabidopsis thaliana aboveg... 50 5e-004
gb|AV530046.1|AV530046 AV530046 Arabidopsis thaliana aboveg... 50 5e-004
gb|AV536829.1|AV536829 AV536829 Arabidopsis thaliana liquid... 50 5e-004
gb|AV546683.1|AV546683 AV546683 Arabidopsis thaliana roots ... 50 5e-004
gb|AV547198.1|AV547198 AV547198 Arabidopsis thaliana roots ... 50 5e-004
gb|AV558087.1|AV558087 AV558087 Arabidopsis thaliana green ... 50 5e-004
gb|BP655044.1|BP655044 BP655044 RAFL19 Arabidopsis thaliana... 50 5e-004
gb|AF027174.1|AF027174 Arabidopsis thaliana cellulose synth... 50 5e-004
gb|AY099636.1| Arabidopsis thaliana cellulose synthase-like... 50 5e-004
dbj|BD022678.1| Manipulation of cellulose and/or beta-1,4-g... 50 5e-004
gb|AY045960.1| Arabidopsis thaliana putative cellulose synt... 50 5e-004
emb|AX030946.1| Sequence 9 from Patent WO9800549 50 5e-004
gb|BT002335.1| Arabidopsis thaliana clone C104938 putative ... 50 5e-004
emb|BX833092.1|CNS0A0FM Arabidopsis thaliana Full-length cD... 50 5e-004
emb|BX833785.1|CNS0A0C4 Arabidopsis thaliana Full-length cD... 50 5e-004
emb|BX829237.1|CNS0A4ID Arabidopsis thaliana Full-length cD... 50 5e-004
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 50 5e-004
dbj|AB018111.1| Arabidopsis thaliana genomic DNA, chromosom... 50 5e-004
emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome... 50 5e-004
emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosom... 50 5e-004
ref|NM_120599.2| Arabidopsis thaliana CESA3 (CELLULASE SYNT... 50 5e-004
ref|NM_117993.2| Arabidopsis thaliana MYB98; DNA binding / ... 50 5e-004
ref|NM_117994.2| Arabidopsis thaliana CESA8 (CELLULASE SYNT... 50 5e-004
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 50 5e-004
gb|T20516.1|T20516 2524 Lambda-PRL2 Arabidopsis thaliana cD... 48 0.002
gb|AV782576.1|AV782576 AV782576 RAFL4 Arabidopsis thaliana ... 48 0.002
gb|AV442267.1|AV442267 AV442267 Arabidopsis thaliana above-... 48 0.002
gb|AV538027.1|AV538027 AV538027 Arabidopsis thaliana roots ... 48 0.002
gb|AV546309.1|AV546309 AV546309 Arabidopsis thaliana roots ... 48 0.002
gb|AV546311.1|AV546311 AV546311 Arabidopsis thaliana roots ... 48 0.002
gb|AV546312.1|AV546312 AV546312 Arabidopsis thaliana roots ... 48 0.002
gb|AV552905.1|AV552905 AV552905 Arabidopsis thaliana roots ... 48 0.002
gb|AV562949.1|AV562949 AV562949 Arabidopsis thaliana green ... 48 0.002
gb|CK121679.1|CK121679 202d06.p1 AtM1 Arabidopsis thaliana ... 48 0.002
gb|BP582979.1|BP582979 BP582979 RAFL14 Arabidopsis thaliana... 48 0.002
gb|AF027172.1|AF027172 Arabidopsis thaliana cellulose synth... 48 0.002
dbj|BD022673.1| Manipulation of cellulose and/or beta-1,4-g... 48 0.002
dbj|BD022674.1| Manipulation of cellulose and/or beta-1,4-g... 48 0.002
dbj|BD022676.1| Manipulation of cellulose and/or beta-1,4-g... 48 0.002
dbj|BD022679.1| Manipulation of cellulose and/or beta-1,4-g... 48 0.002
emb|AX030938.1| Sequence 1 from Patent WO9800549 48 0.002
emb|AX030940.1| Sequence 3 from Patent WO9800549 48 0.002
emb|AX030942.1| Sequence 5 from Patent WO9800549 48 0.002
emb|AX030948.1| Sequence 11 from Patent WO9800549 48 0.002
gb|BT008654.1| Arabidopsis thaliana clone RAFL09-89-G08 (R1... 48 0.002
emb|BX827280.1|CNS0A2E6 Arabidopsis thaliana Full-length cD... 48 0.002
emb|AL034567.1|ATF8B4 Arabidopsis thaliana DNA chromosome 4... 48 0.002
emb|AL161581.2|ATCHRIV77 Arabidopsis thaliana DNA chromosom... 48 0.002
dbj|AK222115.1| Arabidopsis thaliana mRNA for cellulose syn... 48 0.002
ref|NM_119393.2| Arabidopsis thaliana CESA1 (CELLULASE SYNT... 48 0.002
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 46 0.008
gb|AV537459.1|AV537459 AV537459 Arabidopsis thaliana roots ... 46 0.008
gb|AV560166.1|AV560166 AV560166 Arabidopsis thaliana green ... 46 0.008
gb|AV560817.1|AV560817 AV560817 Arabidopsis thaliana green ... 46 0.008
gb|BP617130.1|BP617130 BP617130 RAFL16 Arabidopsis thaliana... 46 0.008
gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone For... 44 0.030
gb|AV523143.1|AV523143 AV523143 Arabidopsis thaliana aboveg... 44 0.030
emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.12
gb|AA712502.1|AA712502 32217 Lambda-PRL2 Arabidopsis thalia... 42 0.12
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 42 0.12
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 42 0.12
gb|AV782896.1|AV782896 AV782896 RAFL5 Arabidopsis thaliana ... 42 0.12
gb|AV784570.1|AV784570 AV784570 RAFL5 Arabidopsis thaliana ... 42 0.12
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 42 0.12
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 42 0.12
gb|CB074276.1|CB074276 EST00821 Virulent Peronospora parasi... 42 0.12
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 42 0.12
gb|AB038726.1|AB038726 AB038726 Arabidopsis thaliana Above-... 42 0.12
gb|AV524115.1|AV524115 AV524115 Arabidopsis thaliana aboveg... 42 0.12
gb|AV540720.1|AV540720 AV540720 Arabidopsis thaliana roots ... 42 0.12
gb|AV546832.1|AV546832 AV546832 Arabidopsis thaliana roots ... 42 0.12
gb|BP780628.1|BP780628 BP780628 RAFL7 Arabidopsis thaliana ... 42 0.12
gb|AF062485.1|AF062485 Arabidopsis thaliana cellulose synth... 42 0.12
gb|AF375439.1| Arabidopsis thaliana AT5g64740/MVP7_7 mRNA, ... 42 0.12
emb|AX507835.1| Sequence 2530 from Patent WO0216655 42 0.12
gb|AY143957.1| Arabidopsis thaliana At5g64740/MVP7_7 mRNA, ... 42 0.12
emb|BX832166.1|CNS0A1ML Arabidopsis thaliana Full-length cD... 42 0.12
dbj|AB025637.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.12
ref|NM_125870.2| Arabidopsis thaliana CESA6 (CELLULASE SYNT... 42 0.12
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.47
emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.47
gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Rev... 40 0.47
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 40 0.47
gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudo... 40 0.47
gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudo... 40 0.47
gb|CB074173.1|CB074173 EST01904 Methyl Jasmonate Treated Ar... 40 0.47
gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasi... 40 0.47
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 40 0.47
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 40 0.47
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 40 0.47
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 40 0.47
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 40 0.47
gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasi... 40 0.47
gb|AV523139.1|AV523139 AV523139 Arabidopsis thaliana aboveg... 40 0.47
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 40 0.47
emb|AX507774.1| Sequence 2469 from Patent WO0216655 40 0.47
>gb|AU227892.1|AU227892 AU227892 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-30-K05 3',
mRNA sequence
Length = 446
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 326 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 267
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 266 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 207
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 206 gttcggattga 196
>gb|AV544917.1|AV544917 AV544917 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ63c06F 3', mRNA sequence
Length = 645
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 304 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 245
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 244 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 185
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 184 gttcggattga 174
>gb|AV557902.1|AV557902 AV557902 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ083f12F 3', mRNA sequence
Length = 524
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 395 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 336
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 335 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 276
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 275 gttcggattga 265
>gb|AV561551.1|AV561551 AV561551 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ153d07F 3', mRNA sequence
Length = 393
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 335 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 276
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 275 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 216
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 215 gttcggattga 205
>gb|AV563704.1|AV563704 AV563704 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ191g11F 3', mRNA sequence
Length = 575
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 356 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 297
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 296 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 237
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 236 gttcggattga 226
>gb|BP643951.1|BP643951 BP643951 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-63-L20 3',
mRNA sequence
Length = 412
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 347 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 288
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 287 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 228
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 227 gttcggattga 217
>gb|AF458083.1| Arabidopsis thaliana cellulose synthase (IRX5) mRNA, complete cds
Length = 3168
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 2980 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 3039
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 3040 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 3099
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 3100 gttcggattga 3110
>gb|BT005710.1| Arabidopsis thaliana clone RAFL15-30-K05 (R50150) putative cellulose
synthase catalytic subunit (At5g44030) mRNA, complete cds
Length = 3377
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 3033 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 3092
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 3093 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 3152
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 3153 gttcggattga 3163
>gb|BT006111.1| Arabidopsis thaliana clone U50150 putative cellulose synthase
catalytic subunit (At5g44030) mRNA, complete cds
Length = 3181
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 2962 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 3021
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 3022 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 3081
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 3082 gttcggattga 3092
>emb|BX833432.1|CNS09Z0L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL54ZH10 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 838
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 494 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 553
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 554 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 613
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 614 gttcggattga 624
>dbj|AB006703.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRH10
Length = 71522
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 49470 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 49529
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 49530 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 49589
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 49590 gttcggattga 49600
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 16112097 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 16112156
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 16112157 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 16112216
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 16112217 gttcggattga 16112227
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 1459686 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 1459627
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 1459626 tctgggtgattgttcacttgtaccctttcctcaagggtttg 1459586
Score = 42.1 bits (21), Expect = 0.12
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 96 aatggatacgagtcatggggccccctcttcgggaagctcttctttgcattttgggtgatt 155
||||||||||| || ||||| || || ||||| | || ||||||||| ||||||| ||
Sbjct: 22911410 aatggatacgactcgtggggaccgcttttcggaagactgttctttgcactttgggtcatc 22911469
Query: 156 gtccatctgtatcccttcctcaaaggtttggttggga 192
| ||||| || || ||||| ||||||||| ||||||
Sbjct: 22911470 attcatctttacccgttccttaaaggtttgcttggga 22911506
>ref|NM_123770.2| Arabidopsis thaliana CESA4 (CELLULASE SYNTHASE 4); transferase,
transferring glycosyl groups AT5G44030 (CESA4) mRNA,
complete cds
Length = 3745
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 3030 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 3089
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 3090 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 3149
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 3150 gttcggattga 3160
>ref|NM_123771.3| Arabidopsis thaliana unknown protein AT5G44040 mRNA, complete cds
Length = 2278
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 1937 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 1878
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 1877 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 1818
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 1817 gttcggattga 1807
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 17736603 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 17736662
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 263
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 17736663 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 17736722
Query: 264 gttcggattga 274
|||||||||||
Sbjct: 17736723 gttcggattga 17736733
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 1530649 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 1530590
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 1530589 tctgggtgattgttcacttgtaccctttcctcaagggtttg 1530549
Score = 42.1 bits (21), Expect = 0.12
Identities = 78/97 (80%)
Strand = Plus / Plus
Query: 96 aatggatacgagtcatggggccccctcttcgggaagctcttctttgcattttgggtgatt 155
||||||||||| || ||||| || || ||||| | || ||||||||| ||||||| ||
Sbjct: 25903323 aatggatacgactcgtggggaccgcttttcggaagactgttctttgcactttgggtcatc 25903382
Query: 156 gtccatctgtatcccttcctcaaaggtttggttggga 192
| ||||| || || ||||| ||||||||| ||||||
Sbjct: 25903383 attcatctttacccgttccttaaaggtttgcttggga 25903419
>gb|AI994106.1|AI994106 701498975 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701498975, mRNA sequence
Length = 534
Score = 58.0 bits (29), Expect = 2e-006
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 423 atgctatcaacagtggataccaatcatggggaccactctttggcaagttgttctttgcct 482
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
||||||||||||| || |||| || |||||||| ||||||
Sbjct: 483 tttgggtgattgttcacttgtaccctttcctcaagggtttg 523
>gb|AQ967081.1|AQ967081 LERIP40TF LERG Arabidopsis thaliana genomic clone LERIP40, DNA
sequence
Length = 660
Score = 56.0 bits (28), Expect = 8e-006
Identities = 124/156 (79%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
|||||| |||| || || |||||||||||| | ||||| ||||| |||||||||||| |
Sbjct: 447 gggaaggtctttttcgccttttgggtgattcttcatctttatccattcctcaaaggtctt 506
Query: 186 gttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttca 245
| || || |||||||| ||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 507 atgggaagacaaaacagaacacctactattgttattctctggtctatcttgcttgcttct 566
Query: 246 atcttctcactcctttgggttcggattgaccctttc 281
| || ||||| |||||||||| || ||||||||
Sbjct: 567 gtgttttcacttgtttgggttcgtatcaaccctttc 602
>gb|AQ967082.1|AQ967082 LERIP40TR LERG Arabidopsis thaliana genomic clone LERIP40, DNA
sequence
Length = 645
Score = 56.0 bits (28), Expect = 8e-006
Identities = 124/156 (79%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
|||||| |||| || || |||||||||||| | ||||| ||||| |||||||||||| |
Sbjct: 209 gggaaggtctttttcgccttttgggtgattcttcatctttatccattcctcaaaggtctt 150
Query: 186 gttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttca 245
| || || |||||||| ||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 149 atgggaagacaaaacagaacacctactattgttattctctggtctatcttgcttgcttct 90
Query: 246 atcttctcactcctttgggttcggattgaccctttc 281
| || ||||| |||||||||| || ||||||||
Sbjct: 89 gtgttttcacttgtttgggttcgtatcaaccctttc 54
>gb|BP640442.1|BP640442 BP640442 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-51-L02 3',
mRNA sequence
Length = 456
Score = 56.0 bits (28), Expect = 8e-006
Identities = 107/132 (81%), Gaps = 1/132 (0%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaa-ggtttggttgggaggcaaaacag 202
|||||||| ||||| ||||| ||||| ||||||||| |||||| | || || |||||| |
Sbjct: 352 ttttgggtcattgttcatctttatcctttcctcaaagggtttgatgggtagacaaaaccg 293
Query: 203 gacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttg 262
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | ||||
Sbjct: 292 aacaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttg 233
Query: 263 ggttcggattga 274
||||||||||||
Sbjct: 232 ggttcggattga 221
>gb|AF267742.1|AF267742 Arabidopsis thaliana cellulose synthase catalytic subunit (IRX1)
mRNA, complete cds
Length = 2958
Score = 56.0 bits (28), Expect = 8e-006
Identities = 124/156 (79%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
|||||| |||| || || |||||||||||| | ||||| ||||| |||||||||||| |
Sbjct: 2746 gggaaggtctttttcgccttttgggtgattcttcatctttatccattcctcaaaggtctt 2805
Query: 186 gttgggaggcaaaacaggacaccgacaattgtcatcgtctggtccatcctgctggcttca 245
| || || |||||||| ||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 2806 atgggaagacaaaacagaacacctactattgttattctctggtctatcttgcttgcttct 2865
Query: 246 atcttctcactcctttgggttcggattgaccctttc 281
| || ||||| |||||||||| || ||||||||
Sbjct: 2866 gtgttttcacttgtttgggttcgtatcaaccctttc 2901
>gb|AQ964327.1|AQ964327 LERGV37TR LERG Arabidopsis thaliana genomic clone LERGV37, DNA
sequence
Length = 458
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 181
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 116 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 162
>gb|BH810643.1|BH810643 SALK_051007 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_051007, DNA sequence
Length = 230
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 135 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 181
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 137 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 91
>gb|BH810657.1|BH810657 SALK_051024 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_051024, DNA sequence
Length = 407
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 135 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 181
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 313 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 267
>gb|AI999519.1|AI999519 701556274 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701556274, mRNA sequence
Length = 613
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 135 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 181
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 239 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 193
>gb|AC007019.5| Arabidopsis thaliana chromosome 2 clone F7D8 map mi238, complete
sequence
Length = 107848
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 181
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 20218 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 20264
>ref|NM_127746.1| Arabidopsis thaliana CESA9 (CELLULASE SYNTHASE 9); transferase,
transferring glycosyl groups AT2G21770 (CESA9) mRNA,
complete cds
Length = 3308
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 181
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 3067 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 3113
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 181
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 9296375 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 9296421
>gb|BP647418.1|BP647418 BP647418 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-75-G18 3',
mRNA sequence
Length = 403
Score = 52.0 bits (26), Expect = 1e-004
Identities = 99/122 (81%), Gaps = 1/122 (0%)
Strand = Plus / Minus
Query: 153 attgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggacaccgaca 212
||||| ||||| ||||| ||||||||||||||| | || || |||||| |||||||||
Sbjct: 339 attgttcatctttatcctttcctcaaaggtttgatgggtagacaaaac-cgacaccgacg 281
Query: 213 attgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgggttcggatt 272
||||| | | ||||| ||||| || ||||| |||||||| | ||||||||||||||
Sbjct: 280 attgttgttctttggtctatccttctcgcttcgatcttctctttggtttgggttcggatt 221
Query: 273 ga 274
||
Sbjct: 220 ga 219
>gb|B96203.1|B96203 T18H8TFB TAMU Arabidopsis thaliana genomic clone T18H8, DNA
sequence
Length = 398
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 32 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 91
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttc 244
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 92 acacctactattgttattctctggtctatcttgcttgcttc 132
>gb|BE038216.1|BE038216 AA10E02 AA Arabidopsis thaliana cDNA 5' similar to cellulose
synthase catalytic subunit, mRNA sequence
Length = 691
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 166 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 225
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 226 tctgggtgattgttcacttgtaccctttcctcaagggtttg 266
>gb|AV810887.1|AV810887 AV810887 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-65-M12 3',
mRNA sequence
Length = 427
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 280 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 221
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttc 244
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 220 acacctactattgttattctctggtctatcttgcttgcttc 180
>gb|AV811500.1|AV811500 AV811500 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-68-G21 3',
mRNA sequence
Length = 418
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 219 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 160
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttc 244
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 159 acacctactattgttattctctggtctatcttgcttgcttc 119
>gb|AV813548.1|AV813548 AV813548 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-78-P03 3',
mRNA sequence
Length = 407
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 281 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 222
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttc 244
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 221 acacctactattgttattctctggtctatcttgcttgcttc 181
>gb|AV816883.1|AV816883 AV816883 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-92-G07 3',
mRNA sequence
Length = 421
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 275 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 216
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttc 244
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 215 acacctactattgttattctctggtctatcttgcttgcttc 175
>gb|AV817718.1|AV817718 AV817718 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-95-G20 3',
mRNA sequence
Length = 411
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 308 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 249
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttc 244
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 248 acacctactattgttattctctggtctatcttgcttgcttc 208
>gb|AV823492.1|AV823492 AV823492 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-19-M03 5',
mRNA sequence
Length = 540
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 84 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 143
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 144 tctgggtgattgttcacttgtaccctttcctcaagggtttg 184
>gb|AV523438.1|AV523438 AV523438 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL27f02F 3', mRNA
sequence
Length = 596
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 409 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 350
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 349 tctgggtgattgttcacttgtaccctttcctcaagggtttg 309
>gb|AV523533.1|AV523533 AV523533 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL31a04F 3', mRNA
sequence
Length = 433
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 430 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 371
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 370 tctgggtgattgttcacttgtaccctttcctcaagggtttg 330
>gb|AV523635.1|AV523635 AV523635 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL34f12F 3', mRNA
sequence
Length = 545
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 403 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 344
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 343 tctgggtgattgttcacttgtaccctttcctcaagggtttg 303
>gb|AV530046.1|AV530046 AV530046 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL56g12R 5', mRNA
sequence
Length = 506
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 458 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 399
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 398 tctgggtgattgttcacttgtaccctttcctcaagggtttg 358
>gb|AV536829.1|AV536829 AV536829 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0592R 5', mRNA
sequence
Length = 331
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 56 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 115
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttc 244
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 116 acacctactattgttattctctggtctatcttgcttgcttc 156
>gb|AV546683.1|AV546683 AV546683 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL17h10F 3', mRNA sequence
Length = 563
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 463 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 404
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 403 tctgggtgattgttcacttgtaccctttcctcaagggtttg 363
>gb|AV547198.1|AV547198 AV547198 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL27a09F 3', mRNA sequence
Length = 541
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 461 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 402
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 401 tctgggtgattgttcacttgtaccctttcctcaagggtttg 361
>gb|AV558087.1|AV558087 AV558087 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ088h12F 3', mRNA sequence
Length = 431
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 387 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 328
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttc 244
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 327 acacctactattgttattctctggtctatcttgcttgcttc 287
>gb|BP655044.1|BP655044 BP655044 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-19-M15 3',
mRNA sequence
Length = 379
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 308 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 249
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttc 244
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 248 acacctactattgttattctctggtctatcttgcttgcttc 208
>gb|AF027174.1|AF027174 Arabidopsis thaliana cellulose synthase catalytic subunit (Ath-B)
mRNA, complete cds
Length = 3682
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 3206 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 3265
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 3266 tctgggtgattgttcacttgtaccctttcctcaagggtttg 3306
>gb|AY099636.1| Arabidopsis thaliana cellulose synthase-like protein (At4g18780)
mRNA, complete cds
Length = 3109
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 144 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 203
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 2831 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 2890
Query: 204 acaccgacaattgtcatcgtctggtccatcctgctggcttc 244
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 2891 acacctactattgttattctctggtctatcttgcttgcttc 2931
>dbj|BD022678.1| Manipulation of cellulose and/or beta-1,4-glucan
Length = 3614
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 3167 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 3226
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 3227 tctgggtgattgttcacttgtaccctttcctcaagggtttg 3267
>gb|AY045960.1| Arabidopsis thaliana putative cellulose synthase catalytic subunit
(At5g05170) mRNA, partial cds
Length = 574
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 84 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 143
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 144 tctgggtgattgttcacttgtaccctttcctcaagggtttg 184
>emb|AX030946.1| Sequence 9 from Patent WO9800549
Length = 3614
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||| | ||||||| | |||||||| || ||||| || ||| | |||||||| |
Sbjct: 3167 atgctatcaacagtggataccaatcatggggaccactctttggtaagttgttctttgcct 3226
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
| ||||||||||| || |||| || |||||||| ||||||
Sbjct: 3227 tctgggtgattgttcacttgtaccctttcctcaagggtttg 3267
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 295,193
Number of Sequences: 1013581
Number of extensions: 295193
Number of successful extensions: 21111
Number of sequences better than 0.5: 136
Number of HSP's better than 0.5 without gapping: 141
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19848
Number of HSP's gapped (non-prelim): 1247
length of query: 667
length of database: 908,940,872
effective HSP length: 20
effective length of query: 647
effective length of database: 888,669,252
effective search space: 574969006044
effective search space used: 574969006044
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)