BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.3
(671 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU227892.1|AU227892 AU227892 RAFL15 Arabidopsis thaliana... 70 5e-010
gb|AV544917.1|AV544917 AV544917 Arabidopsis thaliana roots ... 70 5e-010
gb|AV557902.1|AV557902 AV557902 Arabidopsis thaliana green ... 70 5e-010
gb|AV561551.1|AV561551 AV561551 Arabidopsis thaliana green ... 70 5e-010
gb|AV563704.1|AV563704 AV563704 Arabidopsis thaliana green ... 70 5e-010
gb|BP643951.1|BP643951 BP643951 RAFL19 Arabidopsis thaliana... 70 5e-010
gb|AF458083.1| Arabidopsis thaliana cellulose synthase (IRX... 70 5e-010
gb|BT005710.1| Arabidopsis thaliana clone RAFL15-30-K05 (R5... 70 5e-010
gb|BT006111.1| Arabidopsis thaliana clone U50150 putative c... 70 5e-010
emb|BX833432.1|CNS09Z0L Arabidopsis thaliana Full-length cD... 70 5e-010
dbj|AB006703.1| Arabidopsis thaliana genomic DNA, chromosom... 70 5e-010
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 70 5e-010
ref|NM_123770.2| Arabidopsis thaliana CESA4 (CELLULASE SYNT... 70 5e-010
ref|NM_123771.3| Arabidopsis thaliana unknown protein AT5G4... 70 5e-010
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 70 5e-010
gb|BP640442.1|BP640442 BP640442 RAFL19 Arabidopsis thaliana... 56 8e-006
gb|AQ964327.1|AQ964327 LERGV37TR LERG Arabidopsis thaliana ... 54 3e-005
gb|BH810643.1|BH810643 SALK_051007 Arabidopsis thaliana TDN... 54 3e-005
gb|BH810657.1|BH810657 SALK_051024 Arabidopsis thaliana TDN... 54 3e-005
gb|AI999519.1|AI999519 701556274 A. thaliana, Columbia Col-... 54 3e-005
gb|AC007019.5| Arabidopsis thaliana chromosome 2 clone F7D8... 54 3e-005
ref|NM_127746.1| Arabidopsis thaliana CESA9 (CELLULASE SYNT... 54 3e-005
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 54 3e-005
gb|AQ967081.1|AQ967081 LERIP40TF LERG Arabidopsis thaliana ... 52 1e-004
gb|AQ967082.1|AQ967082 LERIP40TR LERG Arabidopsis thaliana ... 52 1e-004
gb|BP647418.1|BP647418 BP647418 RAFL19 Arabidopsis thaliana... 52 1e-004
gb|AF267742.1|AF267742 Arabidopsis thaliana cellulose synth... 52 1e-004
gb|B96203.1|B96203 T18H8TFB TAMU Arabidopsis thaliana genom... 50 5e-004
gb|AV810887.1|AV810887 AV810887 RAFL9 Arabidopsis thaliana ... 50 5e-004
gb|AV811500.1|AV811500 AV811500 RAFL9 Arabidopsis thaliana ... 50 5e-004
gb|AV813548.1|AV813548 AV813548 RAFL9 Arabidopsis thaliana ... 50 5e-004
gb|AV816883.1|AV816883 AV816883 RAFL9 Arabidopsis thaliana ... 50 5e-004
gb|AV817718.1|AV817718 AV817718 RAFL9 Arabidopsis thaliana ... 50 5e-004
gb|AV536829.1|AV536829 AV536829 Arabidopsis thaliana liquid... 50 5e-004
gb|AV558087.1|AV558087 AV558087 Arabidopsis thaliana green ... 50 5e-004
gb|BP655044.1|BP655044 BP655044 RAFL19 Arabidopsis thaliana... 50 5e-004
gb|AY099636.1| Arabidopsis thaliana cellulose synthase-like... 50 5e-004
emb|BX829237.1|CNS0A4ID Arabidopsis thaliana Full-length cD... 50 5e-004
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 50 5e-004
emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome... 50 5e-004
emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosom... 50 5e-004
ref|NM_117993.2| Arabidopsis thaliana MYB98; DNA binding / ... 50 5e-004
ref|NM_117994.2| Arabidopsis thaliana CESA8 (CELLULASE SYNT... 50 5e-004
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 50 5e-004
gb|AI994106.1|AI994106 701498975 A. thaliana, Ohio State cl... 46 0.008
gb|AV560166.1|AV560166 AV560166 Arabidopsis thaliana green ... 46 0.008
gb|BP617130.1|BP617130 BP617130 RAFL16 Arabidopsis thaliana... 46 0.008
gb|AA712502.1|AA712502 32217 Lambda-PRL2 Arabidopsis thalia... 42 0.12
>gb|AU227892.1|AU227892 AU227892 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-30-K05 3',
mRNA sequence
Length = 446
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 326 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 267
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 266 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 207
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 206 gttcggattga 196
>gb|AV544917.1|AV544917 AV544917 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ63c06F 3', mRNA sequence
Length = 645
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 304 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 245
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 244 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 185
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 184 gttcggattga 174
>gb|AV557902.1|AV557902 AV557902 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ083f12F 3', mRNA sequence
Length = 524
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 395 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 336
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 335 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 276
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 275 gttcggattga 265
>gb|AV561551.1|AV561551 AV561551 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ153d07F 3', mRNA sequence
Length = 393
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 335 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 276
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 275 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 216
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 215 gttcggattga 205
>gb|AV563704.1|AV563704 AV563704 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ191g11F 3', mRNA sequence
Length = 575
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 356 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 297
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 296 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 237
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 236 gttcggattga 226
>gb|BP643951.1|BP643951 BP643951 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-63-L20 3',
mRNA sequence
Length = 412
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 347 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 288
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 287 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 228
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 227 gttcggattga 217
>gb|AF458083.1| Arabidopsis thaliana cellulose synthase (IRX5) mRNA, complete cds
Length = 3168
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 2980 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 3039
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 3040 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 3099
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 3100 gttcggattga 3110
>gb|BT005710.1| Arabidopsis thaliana clone RAFL15-30-K05 (R50150) putative cellulose
synthase catalytic subunit (At5g44030) mRNA, complete cds
Length = 3377
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 3033 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 3092
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 3093 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 3152
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 3153 gttcggattga 3163
>gb|BT006111.1| Arabidopsis thaliana clone U50150 putative cellulose synthase
catalytic subunit (At5g44030) mRNA, complete cds
Length = 3181
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 2962 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 3021
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 3022 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 3081
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 3082 gttcggattga 3092
>emb|BX833432.1|CNS09Z0L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL54ZH10 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 838
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 494 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 553
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 554 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 613
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 614 gttcggattga 624
>dbj|AB006703.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRH10
Length = 71522
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 49470 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 49529
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 49530 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 49589
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 49590 gttcggattga 49600
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 16112097 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 16112156
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 16112157 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 16112216
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 16112217 gttcggattga 16112227
>ref|NM_123770.2| Arabidopsis thaliana CESA4 (CELLULASE SYNTHASE 4); transferase,
transferring glycosyl groups AT5G44030 (CESA4) mRNA,
complete cds
Length = 3745
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 3030 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 3089
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 3090 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 3149
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 3150 gttcggattga 3160
>ref|NM_123771.3| Arabidopsis thaliana unknown protein AT5G44040 mRNA, complete cds
Length = 2278
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 1937 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 1878
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 1877 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 1818
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 1817 gttcggattga 1807
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 69.9 bits (35), Expect = 5e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||| ||||| ||||| ||||| ||||||||||||||| | || || |||||| |
Sbjct: 17736603 ttttgggtcattgttcatctttatcctttcctcaaaggtttgatgggtagacaaaaccga 17736662
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | |||||
Sbjct: 17736663 acaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttgg 17736722
Query: 136 gttcggattga 146
|||||||||||
Sbjct: 17736723 gttcggattga 17736733
>gb|BP640442.1|BP640442 BP640442 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-51-L02 3',
mRNA sequence
Length = 456
Score = 56.0 bits (28), Expect = 8e-006
Identities = 107/132 (81%), Gaps = 1/132 (0%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaa-ggtttggttgggaggcaaaacag 74
|||||||| ||||| ||||| ||||| ||||||||| |||||| | || || |||||| |
Sbjct: 352 ttttgggtcattgttcatctttatcctttcctcaaagggtttgatgggtagacaaaaccg 293
Query: 75 gacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttg 134
|||||||| ||||| | | ||||| ||||| || ||||| |||||||| | ||||
Sbjct: 292 aacaccgacgattgttgttctttggtctatccttctcgcttcgatcttctctttggtttg 233
Query: 135 ggttcggattga 146
||||||||||||
Sbjct: 232 ggttcggattga 221
>gb|AQ964327.1|AQ964327 LERGV37TR LERG Arabidopsis thaliana genomic clone LERGV37, DNA
sequence
Length = 458
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 53
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 116 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 162
>gb|BH810643.1|BH810643 SALK_051007 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_051007, DNA sequence
Length = 230
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 53
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 137 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 91
>gb|BH810657.1|BH810657 SALK_051024 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_051024, DNA sequence
Length = 407
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 53
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 313 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 267
>gb|AI999519.1|AI999519 701556274 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701556274, mRNA sequence
Length = 613
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 53
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 239 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 193
>gb|AC007019.5| Arabidopsis thaliana chromosome 2 clone F7D8 map mi238, complete
sequence
Length = 107848
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 53
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 20218 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 20264
>ref|NM_127746.1| Arabidopsis thaliana CESA9 (CELLULASE SYNTHASE 9); transferase,
transferring glycosyl groups AT2G21770 (CESA9) mRNA,
complete cds
Length = 3308
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 53
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 3067 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 3113
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaagg 53
|||||||| ||||||||||||| ||| ||||||| |||||||||||
Sbjct: 9296375 ttctttgcgctttgggtgattgttcatttgtatccgttcctcaaagg 9296421
>gb|AQ967081.1|AQ967081 LERIP40TF LERG Arabidopsis thaliana genomic clone LERIP40, DNA
sequence
Length = 660
Score = 52.0 bits (26), Expect = 1e-004
Identities = 110/138 (79%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 465 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 524
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
||||| || ||||| || ||||||| ||| |||| ||||| | || ||||| |||||
Sbjct: 525 acacctactattgttattctctggtctatcttgcttgcttctgtgttttcacttgtttgg 584
Query: 136 gttcggattgaccctttc 153
||||| || ||||||||
Sbjct: 585 gttcgtatcaaccctttc 602
>gb|AQ967082.1|AQ967082 LERIP40TR LERG Arabidopsis thaliana genomic clone LERIP40, DNA
sequence
Length = 645
Score = 52.0 bits (26), Expect = 1e-004
Identities = 110/138 (79%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 191 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 132
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
||||| || ||||| || ||||||| ||| |||| ||||| | || ||||| |||||
Sbjct: 131 acacctactattgttattctctggtctatcttgcttgcttctgtgttttcacttgtttgg 72
Query: 136 gttcggattgaccctttc 153
||||| || ||||||||
Sbjct: 71 gttcgtatcaaccctttc 54
>gb|BP647418.1|BP647418 BP647418 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-75-G18 3',
mRNA sequence
Length = 403
Score = 52.0 bits (26), Expect = 1e-004
Identities = 99/122 (81%), Gaps = 1/122 (0%)
Strand = Plus / Minus
Query: 25 attgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacaggacaccgaca 84
||||| ||||| ||||| ||||||||||||||| | || || |||||| |||||||||
Sbjct: 339 attgttcatctttatcctttcctcaaaggtttgatgggtagacaaaac-cgacaccgacg 281
Query: 85 attgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgggttcggatt 144
||||| | | ||||| ||||| || ||||| |||||||| | ||||||||||||||
Sbjct: 280 attgttgttctttggtctatccttctcgcttcgatcttctctttggtttgggttcggatt 221
Query: 145 ga 146
||
Sbjct: 220 ga 219
>gb|AF267742.1|AF267742 Arabidopsis thaliana cellulose synthase catalytic subunit (IRX1)
mRNA, complete cds
Length = 2958
Score = 52.0 bits (26), Expect = 1e-004
Identities = 110/138 (79%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 2764 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 2823
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactcctttgg 135
||||| || ||||| || ||||||| ||| |||| ||||| | || ||||| |||||
Sbjct: 2824 acacctactattgttattctctggtctatcttgcttgcttctgtgttttcacttgtttgg 2883
Query: 136 gttcggattgaccctttc 153
||||| || ||||||||
Sbjct: 2884 gttcgtatcaaccctttc 2901
>gb|B96203.1|B96203 T18H8TFB TAMU Arabidopsis thaliana genomic clone T18H8, DNA
sequence
Length = 398
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 32 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 91
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 92 acacctactattgttattctctggtctatcttgcttgcttc 132
>gb|AV810887.1|AV810887 AV810887 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-65-M12 3',
mRNA sequence
Length = 427
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 280 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 221
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 220 acacctactattgttattctctggtctatcttgcttgcttc 180
>gb|AV811500.1|AV811500 AV811500 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-68-G21 3',
mRNA sequence
Length = 418
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 219 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 160
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 159 acacctactattgttattctctggtctatcttgcttgcttc 119
>gb|AV813548.1|AV813548 AV813548 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-78-P03 3',
mRNA sequence
Length = 407
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 281 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 222
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 221 acacctactattgttattctctggtctatcttgcttgcttc 181
>gb|AV816883.1|AV816883 AV816883 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-92-G07 3',
mRNA sequence
Length = 421
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 275 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 216
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 215 acacctactattgttattctctggtctatcttgcttgcttc 175
>gb|AV817718.1|AV817718 AV817718 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-95-G20 3',
mRNA sequence
Length = 411
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 308 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 249
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 248 acacctactattgttattctctggtctatcttgcttgcttc 208
>gb|AV536829.1|AV536829 AV536829 Arabidopsis thaliana liquid-cultured seedlings Columbia
Arabidopsis thaliana cDNA clone pAZNII0592R 5', mRNA
sequence
Length = 331
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 56 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 115
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 116 acacctactattgttattctctggtctatcttgcttgcttc 156
>gb|AV558087.1|AV558087 AV558087 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ088h12F 3', mRNA sequence
Length = 431
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 387 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 328
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 327 acacctactattgttattctctggtctatcttgcttgcttc 287
>gb|BP655044.1|BP655044 BP655044 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-19-M15 3',
mRNA sequence
Length = 379
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 308 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 249
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 248 acacctactattgttattctctggtctatcttgcttgcttc 208
>gb|AY099636.1| Arabidopsis thaliana cellulose synthase-like protein (At4g18780)
mRNA, complete cds
Length = 3109
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 2831 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 2890
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 2891 acacctactattgttattctctggtctatcttgcttgcttc 2931
>emb|BX829237.1|CNS0A4ID Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL83ZF02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 657
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 331 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacagc 390
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 391 acacctactattgttattctctggtctatcttgcttgcttc 431
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 6225796 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 6225737
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 6225736 acacctactattgttattctctggtctatcttgcttgcttc 6225696
>emb|AL035526.1|ATF28A21 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A21 (ESSA project)
Length = 94301
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 71898 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 71839
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 71838 acacctactattgttattctctggtctatcttgcttgcttc 71798
>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49
Length = 199075
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 91179 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 91120
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 91119 acacctactattgttattctctggtctatcttgcttgcttc 91079
>ref|NM_117993.2| Arabidopsis thaliana MYB98; DNA binding / transcription factor
AT4G18770 (MYB98) mRNA, complete cds
Length = 2004
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 1805 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 1746
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 1745 acacctactattgttattctctggtctatcttgcttgcttc 1705
>ref|NM_117994.2| Arabidopsis thaliana CESA8 (CELLULASE SYNTHASE 8); cellulose
synthase/ transferase, transferring glycosyl groups
AT4G18780 (CESA8) mRNA, complete cds
Length = 3217
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 2831 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 2890
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 2891 acacctactattgttattctctggtctatcttgcttgcttc 2931
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 50.1 bits (25), Expect = 5e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| |||||||||||| | | || || ||||||||
Sbjct: 10313051 ttttgggtgattcttcatctttatccattcctcaaaggtcttatgggaagacaaaacaga 10312992
Query: 76 acaccgacaattgtcatcgtctggtccatcctgctggcttc 116
||||| || ||||| || ||||||| ||| |||| |||||
Sbjct: 10312991 acacctactattgttattctctggtctatcttgcttgcttc 10312951
>gb|AI994106.1|AI994106 701498975 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701498975, mRNA sequence
Length = 534
Score = 46.1 bits (23), Expect = 0.008
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
|||||||| |||||||||||||| || |||| || |||||||| ||||||
Sbjct: 473 ttctttgccttttgggtgattgttcacttgtaccctttcctcaagggtttg 523
>gb|AV560166.1|AV560166 AV560166 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ130d07F 3', mRNA sequence
Length = 368
Score = 46.1 bits (23), Expect = 0.008
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggt 54
|||||||||||| | ||||| ||||| ||||||||||||
Sbjct: 282 ttttgggtgattcttcatctttatccattcctcaaaggt 244
>gb|BP617130.1|BP617130 BP617130 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-22-L06 3',
mRNA sequence
Length = 441
Score = 46.1 bits (23), Expect = 0.008
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggt 54
|||||||||||| | ||||| ||||| ||||||||||||
Sbjct: 255 ttttgggtgattcttcatctttatccattcctcaaaggt 217
>gb|AA712502.1|AA712502 32217 Lambda-PRL2 Arabidopsis thaliana cDNA clone 196P8T7, mRNA
sequence
Length = 467
Score = 42.1 bits (21), Expect = 0.12
Identities = 69/86 (80%)
Strand = Plus / Plus
Query: 16 ttttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaaaacagg 75
|||||||||||| | ||||| ||||| | |||||||||| | | || || ||||||||
Sbjct: 55 ttttgggtgattcttcatctttatccatncctcaaaggtcttatgggaagacaaaacaga 114
Query: 76 acaccgacaattgtcatcgtctggtc 101
||||| || ||||| || |||||||
Sbjct: 115 acacctactattgtnatnctctggtc 140
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 307,730
Number of Sequences: 1013581
Number of extensions: 307730
Number of successful extensions: 20423
Number of sequences better than 0.5: 48
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19761
Number of HSP's gapped (non-prelim): 646
length of query: 671
length of database: 908,940,872
effective HSP length: 20
effective length of query: 651
effective length of database: 888,669,252
effective search space: 578523683052
effective search space used: 578523683052
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)