BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716424.2.5
(1999 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BT006102.1| Arabidopsis thaliana clone U51190 putative c... 42 0.37
dbj|AP000383.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.37
dbj|AK118830.1| Arabidopsis thaliana At3g20110 mRNA for put... 42 0.37
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 42 0.37
ref|NM_112902.2| Arabidopsis thaliana CYP705A20; heme bindi... 42 0.37
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 42 0.37
>gb|BT006102.1| Arabidopsis thaliana clone U51190 putative cytochrome P450
(At3g20110) mRNA, complete cds
Length = 1564
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 826 gttgttgatgagctcggccat 846
|||||||||||||||||||||
Sbjct: 981 gttgttgatgagctcggccat 961
>dbj|AP000383.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MAL21
Length = 83253
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 826 gttgttgatgagctcggccat 846
|||||||||||||||||||||
Sbjct: 42779 gttgttgatgagctcggccat 42759
>dbj|AK118830.1| Arabidopsis thaliana At3g20110 mRNA for putative cytochrome P450,
complete cds, clone: RAFL21-16-G19
Length = 1862
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 826 gttgttgatgagctcggccat 846
|||||||||||||||||||||
Sbjct: 1144 gttgttgatgagctcggccat 1124
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 826 gttgttgatgagctcggccat 846
|||||||||||||||||||||
Sbjct: 6979190 gttgttgatgagctcggccat 6979170
>ref|NM_112902.2| Arabidopsis thaliana CYP705A20; heme binding / iron ion binding /
monooxygenase/ oxygen binding AT3G20110 (CYP705A20) mRNA,
complete cds
Length = 1862
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 826 gttgttgatgagctcggccat 846
|||||||||||||||||||||
Sbjct: 1144 gttgttgatgagctcggccat 1124
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 826 gttgttgatgagctcggccat 846
|||||||||||||||||||||
Sbjct: 7022567 gttgttgatgagctcggccat 7022547
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 653,402
Number of Sequences: 1013581
Number of extensions: 653402
Number of successful extensions: 46366
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45913
Number of HSP's gapped (non-prelim): 453
length of query: 1999
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1978
effective length of database: 887,655,671
effective search space: 1755782917238
effective search space used: 1755782917238
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)