BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716394.2.1
(1074 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU238188.1|AU238188 AU238188 RAFL16 Arabidopsis thaliana... 44 0.050
gb|BP815594.1|BP815594 BP815594 RAFL19 Arabidopsis thaliana... 44 0.050
emb|AX506166.1| Sequence 861 from Patent WO0216655 44 0.050
emb|AX651803.1| Sequence 658 from Patent WO03000898 44 0.050
gb|AC006555.4| Arabidopsis thaliana chromosome 2 clone T17C... 44 0.050
gb|AC007233.7| Arabidopsis thaliana chromosome 2 clone T25M... 44 0.050
ref|NM_126593.2| Arabidopsis thaliana hydrolase, hydrolyzin... 44 0.050
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 44 0.050
gb|CL484875.1|CL484875 SAIL_403_G09.v1 SAIL Collection Arab... 42 0.20
>gb|AU238188.1|AU238188 AU238188 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-91-A13 5',
mRNA sequence
Length = 644
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacgagtgg 1013
||||||||||||||||||| ||||||
Sbjct: 99 aggaggaggaggaggaagatgagtgg 74
>gb|BP815594.1|BP815594 BP815594 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-39-F05 5',
mRNA sequence
Length = 376
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacgagtgg 1013
||||||||||||||||||| ||||||
Sbjct: 119 aggaggaggaggaggaagatgagtgg 94
>emb|AX506166.1| Sequence 861 from Patent WO0216655
Length = 1422
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacgagtgg 1013
||||||||||||||||||| ||||||
Sbjct: 41 aggaggaggaggaggaagatgagtgg 16
>emb|AX651803.1| Sequence 658 from Patent WO03000898
Length = 1422
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacgagtgg 1013
||||||||||||||||||| ||||||
Sbjct: 41 aggaggaggaggaggaagatgagtgg 16
>gb|AC006555.4| Arabidopsis thaliana chromosome 2 clone T17C22 map ve013, complete
sequence
Length = 29078
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacgagtgg 1013
||||||||||||||||||| ||||||
Sbjct: 3425 aggaggaggaggaggaagatgagtgg 3400
>gb|AC007233.7| Arabidopsis thaliana chromosome 2 clone T25M19 map ve013, complete
sequence
Length = 39858
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 988 aggaggaggaggaggaagacgagtgg 1013
||||||||||||||||||| ||||||
Sbjct: 2153 aggaggaggaggaggaagatgagtgg 2178
>ref|NM_126593.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT2G05790 mRNA, complete cds
Length = 1667
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacgagtgg 1013
||||||||||||||||||| ||||||
Sbjct: 99 aggaggaggaggaggaagatgagtgg 74
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 44.1 bits (22), Expect = 0.050
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 988 aggaggaggaggaggaagacgagtgg 1013
||||||||||||||||||| ||||||
Sbjct: 2199487 aggaggaggaggaggaagatgagtgg 2199462
>gb|CL484875.1|CL484875 SAIL_403_G09.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_403_G09.v1, DNA sequence
Length = 897
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 890 gcaccgccgccgccgccttct 910
|||||||||||||||||||||
Sbjct: 648 gcaccgccgccgccgccttct 668
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 502,403
Number of Sequences: 1013581
Number of extensions: 502403
Number of successful extensions: 57743
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57524
Number of HSP's gapped (non-prelim): 209
length of query: 1074
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1054
effective length of database: 888,669,252
effective search space: 936657391608
effective search space used: 936657391608
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)