BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716323.2.1
(724 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH847512.1|BH847512 SALK_054675.56.00.x Arabidopsis thal... 42 0.13
gb|BH847526.1|BH847526 SALK_054692.53.50.x Arabidopsis thal... 42 0.13
gb|BZ357609.1|BZ357609 SALK_130997.51.70.x Arabidopsis thal... 42 0.13
gb|CC887182.1|CC887182 SALK_149702.42.00.n Arabidopsis thal... 42 0.13
gb|CL465040.1|CL465040 SAIL_1233_A01.v1 SAIL Collection Ara... 42 0.13
gb|AY202973.1|AY202973 AY202973 Arabidopsis thaliana Landsb... 42 0.13
gb|AV809888.1|AV809888 AV809888 RAFL9 Arabidopsis thaliana ... 42 0.13
gb|AV810589.1|AV810589 AV810589 RAFL9 Arabidopsis thaliana ... 42 0.13
gb|AV817533.1|AV817533 AV817533 RAFL9 Arabidopsis thaliana ... 42 0.13
gb|AV520672.1|AV520672 AV520672 Arabidopsis thaliana aboveg... 42 0.13
gb|AV556332.1|AV556332 AV556332 Arabidopsis thaliana green ... 42 0.13
gb|BP590061.1|BP590061 BP590061 RAFL15 Arabidopsis thaliana... 42 0.13
gb|BP664326.1|BP664326 BP664326 RAFL21 Arabidopsis thaliana... 42 0.13
gb|BP787964.1|BP787964 BP787964 RAFL7 Arabidopsis thaliana ... 42 0.13
gb|AY136459.1| Arabidopsis thaliana 4-coumarate-CoA ligase-... 42 0.13
gb|AY250835.1| Arabidopsis thaliana 4-coumarate-CoA ligase-... 42 0.13
gb|BT010394.1| Arabidopsis thaliana At5g63380 mRNA, complet... 42 0.13
gb|AY376731.1| Arabidopsis thaliana 4-coumarate CoA ligase ... 42 0.13
emb|BX832101.1|CNS0A10J Arabidopsis thaliana Full-length cD... 42 0.13
dbj|AB023035.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.13
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 42 0.13
ref|NM_125733.2| Arabidopsis thaliana 4-coumarate-CoA ligas... 42 0.13
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.13
>gb|BH847512.1|BH847512 SALK_054675.56.00.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_054675.56.00.x,
DNA sequence
Length = 201
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 165 ccaatggctttcatagtgagaaaaccagg 137
>gb|BH847526.1|BH847526 SALK_054692.53.50.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_054692.53.50.x,
DNA sequence
Length = 90
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 54 ccaatggctttcatagtgagaaaaccagg 26
>gb|BZ357609.1|BZ357609 SALK_130997.51.70.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_130997.51.70.x,
DNA sequence
Length = 221
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 185 ccaatggctttcatagtgagaaaaccagg 157
>gb|CC887182.1|CC887182 SALK_149702.42.00.n Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_149702.42.00.n,
DNA sequence
Length = 255
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 218 ccaatggctttcatagtgagaaaaccagg 190
>gb|CL465040.1|CL465040 SAIL_1233_A01.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_1233_A01.v1, DNA sequence
Length = 916
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 347 ccaatggctttcatagtgagaaaaccagg 319
>gb|AY202973.1|AY202973 AY202973 Arabidopsis thaliana Landsberg DNA Arabidopsis thaliana
genomic clone GT8005.Ds5.04.06.01.JU88.b.737, DNA
sequence
Length = 737
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 685 ccaatggctttcatagtgagaaaaccagg 657
>gb|AV809888.1|AV809888 AV809888 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-61-K21 3',
mRNA sequence
Length = 428
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 371 ccaatggctttcatagtgagaaaaccagg 343
>gb|AV810589.1|AV810589 AV810589 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-64-I21 3',
mRNA sequence
Length = 417
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 350 ccaatggctttcatagtgagaaaaccagg 322
>gb|AV817533.1|AV817533 AV817533 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-94-M15 3',
mRNA sequence
Length = 403
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 327 ccaatggctttcatagtgagaaaaccagg 299
>gb|AV520672.1|AV520672 AV520672 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZ28d01F 3', mRNA
sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 339 ccaatggctttcatagtgagaaaaccagg 311
>gb|AV556332.1|AV556332 AV556332 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ040c12F 3', mRNA sequence
Length = 593
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 350 ccaatggctttcatagtgagaaaaccagg 322
>gb|BP590061.1|BP590061 BP590061 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-09-G10 3',
mRNA sequence
Length = 417
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 378 ccaatggctttcatagtgagaaaaccagg 350
>gb|BP664326.1|BP664326 BP664326 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-11-N15 3',
mRNA sequence
Length = 429
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 346 ccaatggctttcatagtgagaaaaccagg 318
>gb|BP787964.1|BP787964 BP787964 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-31-A16 3',
mRNA sequence
Length = 382
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 328 ccaatggctttcatagtgagaaaaccagg 300
>gb|AY136459.1| Arabidopsis thaliana 4-coumarate-CoA ligase-like protein (At5g63380)
mRNA, complete cds
Length = 1895
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 1526 ccaatggctttcatagtgagaaaaccagg 1554
>gb|AY250835.1| Arabidopsis thaliana 4-coumarate-CoA ligase-like protein (At5g63380)
mRNA, complete cds
Length = 1689
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 1489 ccaatggctttcatagtgagaaaaccagg 1517
>gb|BT010394.1| Arabidopsis thaliana At5g63380 mRNA, complete cds
Length = 1689
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 1489 ccaatggctttcatagtgagaaaaccagg 1517
>gb|AY376731.1| Arabidopsis thaliana 4-coumarate CoA ligase isoform 4 mRNA, complete
cds
Length = 1689
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 1489 ccaatggctttcatagtgagaaaaccagg 1517
>emb|BX832101.1|CNS0A10J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH51ZE03 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1833
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 1522 ccaatggctttcatagtgagaaaaccagg 1550
>dbj|AB023035.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9H21
Length = 15319
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 14860 ccaatggctttcatagtgagaaaaccagg 14832
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 22503200 ccaatggctttcatagtgagaaaaccagg 22503172
>ref|NM_125733.2| Arabidopsis thaliana 4-coumarate-CoA ligase/ fatty-acyl-CoA synthase
AT5G63380 mRNA, complete cds
Length = 1896
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 1526 ccaatggctttcatagtgagaaaaccagg 1554
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 333 ccaatggcttttatagtgaggaaaccagg 361
||||||||||| |||||||| ||||||||
Sbjct: 25405113 ccaatggctttcatagtgagaaaaccagg 25405085
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 344,506
Number of Sequences: 1013581
Number of extensions: 344506
Number of successful extensions: 25621
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25404
Number of HSP's gapped (non-prelim): 217
length of query: 724
length of database: 908,940,872
effective HSP length: 20
effective length of query: 704
effective length of database: 888,669,252
effective search space: 625623153408
effective search space used: 625623153408
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)