BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716233.2.1
(1153 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|L22563.1|ATHCKIB Arabidopsis thaliana casein kinase II b... 135 2e-029
ref|NM_124079.2| Arabidopsis thaliana CKB1; protein kinase ... 135 2e-029
gb|AU237720.1|AU237720 AU237720 RAFL16 Arabidopsis thaliana... 100 1e-018
gb|AV551311.1|AV551311 AV551311 Arabidopsis thaliana roots ... 100 1e-018
gb|AF068318.1|AF068318 Arabidopsis thaliana regulatory subu... 100 1e-018
emb|CQ803654.1| Sequence 65 from Patent WO2004035798 100 1e-018
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 100 1e-018
emb|AL163852.1|ATF27H5 Arabidopsis thaliana DNA chromosome ... 100 1e-018
ref|NM_115889.3| Arabidopsis thaliana CKB3; protein kinase ... 100 1e-018
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 100 1e-018
gb|AF263518.1|AF263518 Arabidopsis thaliana protein synthes... 92 3e-016
ref|NM_203167.1| Arabidopsis thaliana CKB1; protein kinase ... 90 1e-015
ref|NM_001036949.1| Arabidopsis thaliana CKB1; protein kina... 90 1e-015
gb|T42848.1|T42848 6111 Lambda-PRL2 Arabidopsis thaliana cD... 88 4e-015
gb|T42705.1|T42705 5968 Lambda-PRL2 Arabidopsis thaliana cD... 84 6e-014
gb|AI993201.1|AI993201 701495685 A. thaliana, Ohio State cl... 84 6e-014
gb|AV824835.1|AV824835 AV824835 RAFL6 Arabidopsis thaliana ... 82 2e-013
gb|CF651755.1|CF651755 04-L020359-066-002-G01-SP6P MPIZ-ADI... 82 2e-013
gb|AY052265.1| Arabidopsis thaliana At2g44680/F16B22.17 mRN... 82 2e-013
gb|AY060523.1| Arabidopsis thaliana At2g44680/F16B22.17 mRN... 82 2e-013
gb|AY062585.1| Arabidopsis thaliana putative casein kinase ... 82 2e-013
gb|AY093344.1| Arabidopsis thaliana putative casein kinase ... 82 2e-013
emb|AX507695.1| Sequence 2390 from Patent WO0216655 82 2e-013
gb|AY088075.1| Arabidopsis thaliana clone 40953 mRNA, compl... 82 2e-013
gb|AC003672.3| Arabidopsis thaliana chromosome 2 clone F16B... 82 2e-013
ref|NM_130032.2| Arabidopsis thaliana protein kinase CK2 re... 82 2e-013
ref|NM_180090.1| Arabidopsis thaliana protein kinase CK2 re... 82 2e-013
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 82 2e-013
gb|AV792274.1|AV792274 AV792274 RAFL7 Arabidopsis thaliana ... 74 6e-011
emb|BX830065.1|CNS0A25O Arabidopsis thaliana Full-length cD... 74 6e-011
gb|AV546475.1|AV546475 AV546475 Arabidopsis thaliana roots ... 72 2e-010
emb|BX822193.1|CNS0A6ZY Arabidopsis thaliana Full-length cD... 72 2e-010
dbj|AB025609.1| Arabidopsis thaliana genomic DNA, chromosom... 70 9e-010
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 70 9e-010
gb|BP791893.1|BP791893 BP791893 RAFL7 Arabidopsis thaliana ... 66 1e-008
gb|U03984.1|ATU03984 Arabidopsis thaliana casein kinase II ... 66 1e-008
gb|BT005279.1| Arabidopsis thaliana At4g17640 mRNA, complet... 66 1e-008
gb|AY085899.1| Arabidopsis thaliana clone 19505 mRNA, compl... 66 1e-008
emb|BX827683.1|CNS0A2YU Arabidopsis thaliana Full-length cD... 66 1e-008
dbj|AK119067.1| Arabidopsis thaliana At4g17640 mRNA for put... 66 1e-008
ref|NM_117872.2| Arabidopsis thaliana CKB2; protein kinase ... 66 1e-008
gb|AI996697.1|AI996697 701667982 A. thaliana, Columbia Col-... 62 2e-007
gb|Z34116.1|Z34116 ATTS3150 Grenoble-B Arabidopsis thaliana... 60 9e-007
gb|T45841.1|T45841 9104 Lambda-PRL2 Arabidopsis thaliana cD... 60 9e-007
gb|BE526951.1|BE526951 M66B05STM Arabidopsis developing see... 60 9e-007
gb|BH911167.1|BH911167 SALK_065565.53.45.x Arabidopsis thal... 56 1e-005
gb|AV825757.1|AV825757 AV825757 RAFL7 Arabidopsis thaliana ... 56 1e-005
emb|BX832248.1|CNS0A285 Arabidopsis thaliana Full-length cD... 56 1e-005
gb|CC797462.1|CC797462 SALK_144967.54.25.x Arabidopsis thal... 54 6e-005
gb|CW795532.1|CW795532 WiscDsLox449D01 Arabidopsis thaliana... 52 2e-004
gb|AU231314.1|AU231314 AU231314 RAFL21 Arabidopsis thaliana... 52 2e-004
gb|AV538974.1|AV538974 AV538974 Arabidopsis thaliana roots ... 52 2e-004
emb|BX831794.1|CNS0A14B Arabidopsis thaliana Full-length cD... 52 2e-004
emb|AJ527175.1|ATH527175 Arabidopsis thaliana T-DNA flankin... 50 9e-004
gb|AC004005.3| Arabidopsis thaliana chromosome 2 clone F6E1... 50 9e-004
gb|BP636476.1|BP636476 BP636476 RAFL18 Arabidopsis thaliana... 48 0.003
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 48 0.003
emb|AL161546.2|ATCHRIV46 Arabidopsis thaliana DNA chromosom... 48 0.003
emb|Z97343.1|ATFCA8 Arabidopsis thaliana DNA chromosome 4, ... 48 0.003
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 48 0.003
emb|AL770779.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.013
gb|BP844091.1|BP844091 BP844091 RAFL21 Arabidopsis thaliana... 46 0.013
gb|AI993910.1|AI993910 701493356 A. thaliana, Ohio State cl... 44 0.053
emb|AL089456.1|CNS00TAQ Arabidopsis thaliana genome survey ... 42 0.21
gb|AU239951.1|AU239951 AU239951 RAFL21 Arabidopsis thaliana... 42 0.21
gb|CB259616.1|CB259616 35-E9536-013-002-F09-T7R MPIZ-ADIS-0... 42 0.21
>gb|L22563.1|ATHCKIB Arabidopsis thaliana casein kinase II beta subunit CKB1 mRNA,
complete cds
Length = 1285
Score = 135 bits (68), Expect = 2e-029
Identities = 260/324 (80%)
Strand = Plus / Minus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgcct 394
|||||||||||||| ||||| || || || ||||||||||| | |||||| |||||||||
Sbjct: 928 taagtcatcaggaacagatgtggaaacgttgtcccaaagtaagctccatcaatgttgcct 869
Query: 395 tggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtg 454
|| ||||| |||| ||| || | || |||||||||||||| ||||||||||||||||||
Sbjct: 868 tgatactttgatcgtgggtaataaatgtcttcgcatttcgggcaatatatcttcacagtg 809
Query: 455 ctcgatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacacc 514
|| |||| || | |||||||| || | ||||| || || ||||||||||| || ||
Sbjct: 808 ctagatcgcggtaagtctgattgaccaaccggaagacaaggttggccacagcaataaact 749
Query: 515 ctggggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttg 574
|| || ||||| |||||||| ||||| ||| | || || |||||||| || | || |||
Sbjct: 748 cttggacatcttccaaagtcatagtttttgtatttgtctaacattgctgccaatcctttg 689
Query: 575 ctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgatt 634
|| || || ||||| || |||||||| | || |||| |||||| || | |||||||||
Sbjct: 688 ctagtcaatatgtaacgagcatgaatcagtccatacaacatctcagctgctgactcgatc 629
Query: 635 aattcattttgctcctcggtaaac 658
|||||||| || ||||| ||||||
Sbjct: 628 aattcattctgttcctctgtaaac 605
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 804 tacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatctt 863
|||| ||||| || ||||| || ||||||||||| || |||||||||||||| || ||||
Sbjct: 459 tacaaaaccaagatatccatgaagtgtcctctccatcagaaccactcacatctgattctt 400
Query: 864 cact 867
||||
Sbjct: 399 cact 396
>ref|NM_124079.2| Arabidopsis thaliana CKB1; protein kinase CK2 regulator AT5G47080
(CKB1) transcript variant AT5G47080.1 mRNA, complete cds
Length = 1372
Score = 135 bits (68), Expect = 2e-029
Identities = 260/324 (80%)
Strand = Plus / Minus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgcct 394
|||||||||||||| ||||| || || || ||||||||||| | |||||| |||||||||
Sbjct: 939 taagtcatcaggaacagatgtggaaacgttgtcccaaagtaagctccatcaatgttgcct 880
Query: 395 tggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtg 454
|| ||||| |||| ||| || | || |||||||||||||| ||||||||||||||||||
Sbjct: 879 tgatactttgatcgtgggtaataaatgtcttcgcatttcgggcaatatatcttcacagtg 820
Query: 455 ctcgatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacacc 514
|| |||| || | |||||||| || | ||||| || || ||||||||||| || ||
Sbjct: 819 ctagatcgcggtaagtctgattgaccaaccggaagacaaggttggccacagcaataaact 760
Query: 515 ctggggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttg 574
|| || ||||| |||||||| ||||| ||| | || || |||||||| || | || |||
Sbjct: 759 cttggacatcttccaaagtcatagtttttgtatttgtctaacattgctgccaatcctttg 700
Query: 575 ctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgatt 634
|| || || ||||| || |||||||| | || |||| |||||| || | |||||||||
Sbjct: 699 ctagtcaatatgtaacgagcatgaatcagtccatacaacatctcagctgctgactcgatc 640
Query: 635 aattcattttgctcctcggtaaac 658
|||||||| || ||||| ||||||
Sbjct: 639 aattcattctgttcctctgtaaac 616
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 804 tacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatctt 863
|||| ||||| || ||||| || ||||||||||| || |||||||||||||| || ||||
Sbjct: 470 tacaaaaccaagatatccatgaagtgtcctctccatcagaaccactcacatctgattctt 411
Query: 864 cact 867
||||
Sbjct: 410 cact 407
>gb|AU237720.1|AU237720 AU237720 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-51-O05 5',
mRNA sequence
Length = 671
Score = 99.6 bits (50), Expect = 1e-018
Identities = 158/194 (81%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||| | |||||| ||
Sbjct: 487 tctaaaatgagatcaagtgcataatcatagtaagggacttgaccacttaaaccacaaaga 428
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| || ||||| || ||||||| ||||| ||||| ||||| |||| |||
Sbjct: 427 ttgaaatcatcttgaatataatcttcatcgacttcacagaagaaatcattccctctcaaa 368
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatct 862
|||| ||||| || ||||| ||||| || || ||||| || |||||||||||||| ||
Sbjct: 367 ttacaaaaccaagagatccacgacgtatcatcaccctccgatccactcacatcagaccct 308
Query: 863 tcactgtcagtttc 876
||||| ||||||||
Sbjct: 307 tcactatcagtttc 294
>gb|AV551311.1|AV551311 AV551311 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ125a09R 5', mRNA sequence
Length = 431
Score = 99.6 bits (50), Expect = 1e-018
Identities = 158/194 (81%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||| | |||||| ||
Sbjct: 202 tctaaaatgagatcaagtgcataatcatagtaagggacttgaccacttaaaccacaaaga 143
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| || ||||| || ||||||| ||||| ||||| ||||| |||| |||
Sbjct: 142 ttgaaatcatcttgaatataatcttcatcgacttcacagaagaaatcattccctctcaaa 83
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatct 862
|||| ||||| || ||||| ||||| || || ||||| || |||||||||||||| ||
Sbjct: 82 ttacaaaaccaagagatccacgacgtatcatcaccctccgatccactcacatcagaccct 23
Query: 863 tcactgtcagtttc 876
||||| ||||||||
Sbjct: 22 tcactatcagtttc 9
>gb|AF068318.1|AF068318 Arabidopsis thaliana regulatory subunit of protein kinase CK2
(CKB3) mRNA, complete cds
Length = 1080
Score = 99.6 bits (50), Expect = 1e-018
Identities = 158/194 (81%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||| | |||||| ||
Sbjct: 548 tctaaaatgagatcaagtgcataatcatagtaagggacttgaccacttaaaccacaaaga 489
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| || ||||| || ||||||| ||||| ||||| ||||| |||| |||
Sbjct: 488 ttgaaatcatcttgaatataatcttcatcgacttcacagaagaaatcattccctctcaaa 429
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatct 862
|||| ||||| || ||||| ||||| || || ||||| || |||||||||||||| ||
Sbjct: 428 ttacaaaaccaagagatccacgacgtatcatcaccctccgatccactcacatcagaccct 369
Query: 863 tcactgtcagtttc 876
||||| ||||||||
Sbjct: 368 tcactatcagtttc 355
Score = 61.9 bits (31), Expect = 2e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||||||||| |||| | ||||||||||| ||| | ||||||||||| || |||
Sbjct: 920 ggcttctgcggctttaagttcccgtaagtcatcaagaacaagtgagggaatgtggttcca 861
Query: 371 aagtatgatccatcgatgttgccttgg 397
||||| | |||||| || |||||||||
Sbjct: 860 aagtacgctccatcaatattgccttgg 834
>emb|CQ803654.1| Sequence 65 from Patent WO2004035798
Length = 831
Score = 99.6 bits (50), Expect = 1e-018
Identities = 158/194 (81%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||| | |||||| ||
Sbjct: 407 tctaaaatgagatcaagtgcataatcatagtaagggacttgaccacttaaaccacaaaga 348
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| || ||||| || ||||||| ||||| ||||| ||||| |||| |||
Sbjct: 347 ttgaaatcatcttgaatataatcttcatcgacttcacagaagaaatcattccctctcaaa 288
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatct 862
|||| ||||| || ||||| ||||| || || ||||| || |||||||||||||| ||
Sbjct: 287 ttacaaaaccaagagatccacgacgtatcatcaccctccgatccactcacatcagaccct 228
Query: 863 tcactgtcagtttc 876
||||| ||||||||
Sbjct: 227 tcactatcagtttc 214
Score = 61.9 bits (31), Expect = 2e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||||||||| |||| | ||||||||||| ||| | ||||||||||| || |||
Sbjct: 779 ggcttctgcggctttaagttcccgtaagtcatcaagaacaagtgagggaatgtggttcca 720
Query: 371 aagtatgatccatcgatgttgccttgg 397
||||| | |||||| || |||||||||
Sbjct: 719 aagtacgctccatcaatattgccttgg 693
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 99.6 bits (50), Expect = 1e-018
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||| | |||||| ||
Sbjct: 22229744 tctaaaatgagatcaagtgcataatcatagtaagggacttgaccacttaaaccacaaaga 22229803
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| || ||||| || ||||||| ||||| ||||| ||||| |||| |||
Sbjct: 22229804 ttgaaatcatcttgaatataatcttcatcgacttcacagaagaaatcattccctctcaaa 22229863
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatct 862
|||| ||||| || ||||| ||||| || || ||||| || |||||||||||||| ||
Sbjct: 22229864 ttacaaaaccaagagatccacgacgtatcatcaccctccgatccactcacatcagaccct 22229923
Query: 863 tcactgtcagtttc 876
||||| ||||||||
Sbjct: 22229924 tcactatcagtttc 22229937
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||||||||| |||| | ||||||||||| ||| | ||||||||||| || |||
Sbjct: 22229040 ggcttctgcggctttaagttcccgtaagtcatcaagaacaagtgagggaatgtggttcca 22229099
Query: 371 aagtatgatccatc 384
||||| | ||||||
Sbjct: 22229100 aagtacgctccatc 22229113
Score = 44.1 bits (22), Expect = 0.053
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 425 tcgcatttcggacaatatatcttcacagtgctcgatct 462
|||||||| || || |||||||||||||| ||||||||
Sbjct: 22229302 tcgcatttagggcagtatatcttcacagtactcgatct 22229339
>emb|AL163852.1|ATF27H5 Arabidopsis thaliana DNA chromosome 3, BAC clone F27H5
Length = 88548
Score = 99.6 bits (50), Expect = 1e-018
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||| | |||||| ||
Sbjct: 46470 tctaaaatgagatcaagtgcataatcatagtaagggacttgaccacttaaaccacaaaga 46529
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| || ||||| || ||||||| ||||| ||||| ||||| |||| |||
Sbjct: 46530 ttgaaatcatcttgaatataatcttcatcgacttcacagaagaaatcattccctctcaaa 46589
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatct 862
|||| ||||| || ||||| ||||| || || ||||| || |||||||||||||| ||
Sbjct: 46590 ttacaaaaccaagagatccacgacgtatcatcaccctccgatccactcacatcagaccct 46649
Query: 863 tcactgtcagtttc 876
||||| ||||||||
Sbjct: 46650 tcactatcagtttc 46663
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||||||||| |||| | ||||||||||| ||| | ||||||||||| || |||
Sbjct: 45766 ggcttctgcggctttaagttcccgtaagtcatcaagaacaagtgagggaatgtggttcca 45825
Query: 371 aagtatgatccatc 384
||||| | ||||||
Sbjct: 45826 aagtacgctccatc 45839
Score = 44.1 bits (22), Expect = 0.053
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 425 tcgcatttcggacaatatatcttcacagtgctcgatct 462
|||||||| || || |||||||||||||| ||||||||
Sbjct: 46028 tcgcatttagggcagtatatcttcacagtactcgatct 46065
>ref|NM_115889.3| Arabidopsis thaliana CKB3; protein kinase CK2 regulator AT3G60250
(CKB3) mRNA, complete cds
Length = 1354
Score = 99.6 bits (50), Expect = 1e-018
Identities = 158/194 (81%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||| | |||||| ||
Sbjct: 558 tctaaaatgagatcaagtgcataatcatagtaagggacttgaccacttaaaccacaaaga 499
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| || ||||| || ||||||| ||||| ||||| ||||| |||| |||
Sbjct: 498 ttgaaatcatcttgaatataatcttcatcgacttcacagaagaaatcattccctctcaaa 439
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatct 862
|||| ||||| || ||||| ||||| || || ||||| || |||||||||||||| ||
Sbjct: 438 ttacaaaaccaagagatccacgacgtatcatcaccctccgatccactcacatcagaccct 379
Query: 863 tcactgtcagtttc 876
||||| ||||||||
Sbjct: 378 tcactatcagtttc 365
Score = 61.9 bits (31), Expect = 2e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||||||||| |||| | ||||||||||| ||| | ||||||||||| || |||
Sbjct: 930 ggcttctgcggctttaagttcccgtaagtcatcaagaacaagtgagggaatgtggttcca 871
Query: 371 aagtatgatccatcgatgttgccttgg 397
||||| | |||||| || |||||||||
Sbjct: 870 aagtacgctccatcaatattgccttgg 844
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 99.6 bits (50), Expect = 1e-018
Identities = 158/194 (81%)
Strand = Plus / Plus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||| | |||||| ||
Sbjct: 22282445 tctaaaatgagatcaagtgcataatcatagtaagggacttgaccacttaaaccacaaaga 22282504
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| || ||||| || ||||||| ||||| ||||| ||||| |||| |||
Sbjct: 22282505 ttgaaatcatcttgaatataatcttcatcgacttcacagaagaaatcattccctctcaaa 22282564
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatct 862
|||| ||||| || ||||| ||||| || || ||||| || |||||||||||||| ||
Sbjct: 22282565 ttacaaaaccaagagatccacgacgtatcatcaccctccgatccactcacatcagaccct 22282624
Query: 863 tcactgtcagtttc 876
||||| ||||||||
Sbjct: 22282625 tcactatcagtttc 22282638
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||||||||| |||| | ||||||||||| ||| | ||||||||||| || |||
Sbjct: 22281741 ggcttctgcggctttaagttcccgtaagtcatcaagaacaagtgagggaatgtggttcca 22281800
Query: 371 aagtatgatccatc 384
||||| | ||||||
Sbjct: 22281801 aagtacgctccatc 22281814
Score = 44.1 bits (22), Expect = 0.053
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 425 tcgcatttcggacaatatatcttcacagtgctcgatct 462
|||||||| || || |||||||||||||| ||||||||
Sbjct: 22282003 tcgcatttagggcagtatatcttcacagtactcgatct 22282040
>gb|AF263518.1|AF263518 Arabidopsis thaliana protein synthesis initiation factor 4G (EIF4G)
gene, complete cds
Length = 10989
Score = 91.7 bits (46), Expect = 3e-016
Identities = 157/194 (80%)
Strand = Plus / Plus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||| | |||||| ||
Sbjct: 9361 tctaaaatgagatcaagtgcataatcatagtaagggacttgaccacttaaaccacaaaga 9420
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| || ||||| || ||||||| ||||| ||||| ||||| |||| |||
Sbjct: 9421 ttgaaatcatcttgaatataatcttcatcgacttcacagaagaaatcattccctctcaaa 9480
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatct 862
|||| ||||| || ||||| ||||| || || ||||| || |||||||||||||| |
Sbjct: 9481 ttacaaaaccaagagatccacgacgtatcatcaccctccgatccactcacatcagaccat 9540
Query: 863 tcactgtcagtttc 876
||||| ||||||||
Sbjct: 9541 tcactatcagtttc 9554
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||||||||| |||| | ||||||||||| ||| | ||||||||||| || |||
Sbjct: 8655 ggcttctgcggctttaagttcccgtaagtcatcaagaacaagtgagggaatgtggttcca 8714
Query: 371 aagtatgatccatc 384
||||| | ||||||
Sbjct: 8715 aagtacgctccatc 8728
Score = 44.1 bits (22), Expect = 0.053
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 425 tcgcatttcggacaatatatcttcacagtgctcgatct 462
|||||||| || || |||||||||||||| ||||||||
Sbjct: 8919 tcgcatttagggcagtatatcttcacagtactcgatct 8956
>ref|NM_203167.1| Arabidopsis thaliana CKB1; protein kinase CK2 regulator AT5G47080
(CKB1) transcript variant AT5G47080.2 mRNA, complete cds
Length = 1562
Score = 89.7 bits (45), Expect = 1e-015
Identities = 189/237 (79%)
Strand = Plus / Minus
Query: 422 tcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatctgattgccct 481
|||||||||||||| |||||||||||||||||||| |||| || | |||||||| ||
Sbjct: 873 tcttcgcatttcgggcaatatatcttcacagtgctagatcgcggtaagtctgattgacca 814
Query: 482 gctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttc 541
| ||||| || || ||||||||||| || || || || ||||| |||||||| |||||
Sbjct: 813 accggaagacaaggttggccacagcaataaactcttggacatcttccaaagtcatagttt 754
Query: 542 ttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaatt 601
||| | || || |||||||| || | || ||||| || || ||||| || ||||||||
Sbjct: 753 ttgtatttgtctaacattgctgccaatcctttgctagtcaatatgtaacgagcatgaatc 694
Query: 602 aaaccgtacagcatctctgcagatgactcgattaattcattttgctcctcggtaaac 658
| || |||| |||||| || | ||||||||| |||||||| || ||||| ||||||
Sbjct: 693 agtccatacaacatctcagctgctgactcgatcaattcattctgttcctctgtaaac 637
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 804 tacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatctt 863
|||| ||||| || ||||| || ||||||||||| || |||||||||||||| || ||||
Sbjct: 491 tacaaaaccaagatatccatgaagtgtcctctccatcagaaccactcacatctgattctt 432
Query: 864 cact 867
||||
Sbjct: 431 cact 428
Score = 46.1 bits (23), Expect = 0.013
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgt 389
|||||||||||||| ||||| || || || ||||||||||| | |||||| ||||
Sbjct: 1129 taagtcatcaggaacagatgtggaaacgttgtcccaaagtaagctccatcaatgt 1075
>ref|NM_001036949.1| Arabidopsis thaliana CKB1; protein kinase CK2 regulator AT5G47080
(CKB1) transcript variant AT5G47080.3 mRNA, complete cds
Length = 1595
Score = 89.7 bits (45), Expect = 1e-015
Identities = 189/237 (79%)
Strand = Plus / Minus
Query: 422 tcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatctgattgccct 481
|||||||||||||| |||||||||||||||||||| |||| || | |||||||| ||
Sbjct: 906 tcttcgcatttcgggcaatatatcttcacagtgctagatcgcggtaagtctgattgacca 847
Query: 482 gctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttc 541
| ||||| || || ||||||||||| || || || || ||||| |||||||| |||||
Sbjct: 846 accggaagacaaggttggccacagcaataaactcttggacatcttccaaagtcatagttt 787
Query: 542 ttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaatt 601
||| | || || |||||||| || | || ||||| || || ||||| || ||||||||
Sbjct: 786 ttgtatttgtctaacattgctgccaatcctttgctagtcaatatgtaacgagcatgaatc 727
Query: 602 aaaccgtacagcatctctgcagatgactcgattaattcattttgctcctcggtaaac 658
| || |||| |||||| || | ||||||||| |||||||| || ||||| ||||||
Sbjct: 726 agtccatacaacatctcagctgctgactcgatcaattcattctgttcctctgtaaac 670
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 804 tacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatctt 863
|||| ||||| || ||||| || ||||||||||| || |||||||||||||| || ||||
Sbjct: 524 tacaaaaccaagatatccatgaagtgtcctctccatcagaaccactcacatctgattctt 465
Query: 864 cact 867
||||
Sbjct: 464 cact 461
Score = 46.1 bits (23), Expect = 0.013
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgt 389
|||||||||||||| ||||| || || || ||||||||||| | |||||| ||||
Sbjct: 1162 taagtcatcaggaacagatgtggaaacgttgtcccaaagtaagctccatcaatgt 1108
>gb|T42848.1|T42848 6111 Lambda-PRL2 Arabidopsis thaliana cDNA clone 118A10T7, mRNA
sequence
Length = 544
Score = 87.7 bits (44), Expect = 4e-015
Identities = 156/194 (80%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||| ||||||| ||||||||| || || || ||| ||| | |||||| ||
Sbjct: 241 tctaaaatgagntcaagtgnataatcatagtaagggacttgaccacttaaaccacaaaga 182
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| || ||||| || ||||||| ||||| ||||| ||||| |||| |||
Sbjct: 181 ttgaaatcatcttgaatataatcttcatcgacttcacagaagaaatcattccctctcaaa 122
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatct 862
|||| ||||| || ||||| ||||| || || ||||| || |||||||||||||| ||
Sbjct: 121 ttacaaaaccaagagatccacgacgtatcatcaccctccgatccactcacatcagaccct 62
Query: 863 tcactgtcagtttc 876
||||| ||||||||
Sbjct: 61 tcactatcagtttc 48
>gb|T42705.1|T42705 5968 Lambda-PRL2 Arabidopsis thaliana cDNA clone 116C22T7, mRNA
sequence
Length = 412
Score = 83.8 bits (42), Expect = 6e-014
Identities = 155/194 (79%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||| ||||||| ||||||||| || || || ||| ||| | |||||| ||
Sbjct: 241 tctaaaatgagntcaagtgnataatcatagtaagggacttgaccacttaaaccacaaaga 182
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| || ||||| || ||||||| ||||| ||||| ||||| |||| |||
Sbjct: 181 ttgaaatcatcttgaatataatcttcatcgacttcacagaagaaatcattccctctcaaa 122
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatct 862
|||| ||||| | ||||| ||||| || || ||||| || |||||||||||||| ||
Sbjct: 121 ttacaaaaccaanagatccacgacgtatcatcaccctccganccactcacatcagaccct 62
Query: 863 tcactgtcagtttc 876
||||| ||||||||
Sbjct: 61 tcactatcagtttc 48
>gb|AI993201.1|AI993201 701495685 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701495685, mRNA sequence
Length = 499
Score = 83.8 bits (42), Expect = 6e-014
Identities = 156/194 (80%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| |||||||| || ||||||||||| || || || ||| ||| | |||||| ||
Sbjct: 440 tctaaaatgagatccagggcataatcatagtaagggacttgaccacttaaaccacaaaga 381
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| || ||||| || ||||||| ||||| ||||| ||||| |||| |||
Sbjct: 380 ttgaaatcatcttgaatataatcttcatcgacttcacagaagaaatcattccctctcaaa 321
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatct 862
|||| ||||| || ||||| ||||| || || ||||| || |||||||||||||| ||
Sbjct: 320 ttacaaaaccaagagatccacgacgtatcatcaccctccgatccactcacatcagaccct 261
Query: 863 tcactgtcagtttc 876
||||| ||||||||
Sbjct: 260 tcactatcagtttc 247
>gb|AV824835.1|AV824835 AV824835 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-77-N13 5',
mRNA sequence
Length = 652
Score = 81.8 bits (41), Expect = 2e-013
Identities = 140/173 (80%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||||| |||||| ||
Sbjct: 615 tctaaaatgagatcaagtgcataatcatagtaaggaacttgaccactcaaaccacagaga 556
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| |||||||| || ||||| | ||||| || || ||||| |||| |||
Sbjct: 555 ttgaaatcatcttgtatataatcttcatctacttcacagaaaaactcattccctctcaaa 496
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatc 855
|||| |||||||| ||||| || || || || || || ||||||||||||||
Sbjct: 495 ttacaaaaccatgagatccaagaggtatcatcaccttctgaaccactcacatc 443
>gb|CF651755.1|CF651755 04-L020359-066-002-G01-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001G012Q 5-PRIME, mRNA sequence
Length = 902
Score = 81.8 bits (41), Expect = 2e-013
Identities = 140/173 (80%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||||| |||||| ||
Sbjct: 243 tctaaaatgagatcaagtgcataatcatagtaaggaacttgaccactcaaaccacagaga 184
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| |||||||| || ||||| | ||||| || || ||||| |||| |||
Sbjct: 183 ttgaaatcatcttgtatataatcttcatctacttcacagaaaaactcattccctctcaaa 124
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatc 855
|||| |||||||| ||||| || || || || || || ||||||||||||||
Sbjct: 123 ttacaaaaccatgagatccaagaggtatcatcaccttctgaaccactcacatc 71
>gb|AY052265.1| Arabidopsis thaliana At2g44680/F16B22.17 mRNA, complete cds
Length = 1297
Score = 81.8 bits (41), Expect = 2e-013
Identities = 140/173 (80%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||||| |||||| ||
Sbjct: 613 tctaaaatgagatcaagtgcataatcatagtaaggaacttgaccactcaaaccacagaga 554
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| |||||||| || ||||| | ||||| || || ||||| |||| |||
Sbjct: 553 ttgaaatcatcttgtatataatcttcatctacttcacagaaaaactcattccctctcaaa 494
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatc 855
|||| |||||||| ||||| || || || || || || ||||||||||||||
Sbjct: 493 ttacaaaaccatgagatccaagaggtatcatcaccttctgaaccactcacatc 441
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 425 tcgcatttcggacaatatatcttcacagtgctcga 459
|||||||| || || ||||||||||||||||||||
Sbjct: 871 tcgcattttgggcagtatatcttcacagtgctcga 837
>gb|AY060523.1| Arabidopsis thaliana At2g44680/F16B22.17 mRNA, complete cds
Length = 849
Score = 81.8 bits (41), Expect = 2e-013
Identities = 140/173 (80%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||||| |||||| ||
Sbjct: 425 tctaaaatgagatcaagtgcataatcatagtaaggaacttgaccactcaaaccacagaga 366
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| |||||||| || ||||| | ||||| || || ||||| |||| |||
Sbjct: 365 ttgaaatcatcttgtatataatcttcatctacttcacagaaaaactcattccctctcaaa 306
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatc 855
|||| |||||||| ||||| || || || || || || ||||||||||||||
Sbjct: 305 ttacaaaaccatgagatccaagaggtatcatcaccttctgaaccactcacatc 253
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 425 tcgcatttcggacaatatatcttcacagtgctcga 459
|||||||| || || ||||||||||||||||||||
Sbjct: 683 tcgcattttgggcagtatatcttcacagtgctcga 649
>gb|AY062585.1| Arabidopsis thaliana putative casein kinase II beta subunit
(At2g44680; F16B22.17) mRNA, complete cds
Length = 1300
Score = 81.8 bits (41), Expect = 2e-013
Identities = 140/173 (80%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||||| |||||| ||
Sbjct: 616 tctaaaatgagatcaagtgcataatcatagtaaggaacttgaccactcaaaccacagaga 557
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| |||||||| || ||||| | ||||| || || ||||| |||| |||
Sbjct: 556 ttgaaatcatcttgtatataatcttcatctacttcacagaaaaactcattccctctcaaa 497
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatc 855
|||| |||||||| ||||| || || || || || || ||||||||||||||
Sbjct: 496 ttacaaaaccatgagatccaagaggtatcatcaccttctgaaccactcacatc 444
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 425 tcgcatttcggacaatatatcttcacagtgctcga 459
|||||||| || || ||||||||||||||||||||
Sbjct: 874 tcgcattttgggcagtatatcttcacagtgctcga 840
>gb|AY093344.1| Arabidopsis thaliana putative casein kinase II beta subunit
(At2g44680) mRNA, complete cds
Length = 920
Score = 81.8 bits (41), Expect = 2e-013
Identities = 140/173 (80%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||||| |||||| ||
Sbjct: 425 tctaaaatgagatcaagtgcataatcatagtaaggaacttgaccactcaaaccacagaga 366
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| |||||||| || ||||| | ||||| || || ||||| |||| |||
Sbjct: 365 ttgaaatcatcttgtatataatcttcatctacttcacagaaaaactcattccctctcaaa 306
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatc 855
|||| |||||||| ||||| || || || || || || ||||||||||||||
Sbjct: 305 ttacaaaaccatgagatccaagaggtatcatcaccttctgaaccactcacatc 253
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 425 tcgcatttcggacaatatatcttcacagtgctcga 459
|||||||| || || ||||||||||||||||||||
Sbjct: 683 tcgcattttgggcagtatatcttcacagtgctcga 649
>emb|AX507695.1| Sequence 2390 from Patent WO0216655
Length = 852
Score = 81.8 bits (41), Expect = 2e-013
Identities = 140/173 (80%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||||| |||||| ||
Sbjct: 425 tctaaaatgagatcaagtgcataatcatagtaaggaacttgaccactcaaaccacagaga 366
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| |||||||| || ||||| | ||||| || || ||||| |||| |||
Sbjct: 365 ttgaaatcatcttgtatataatcttcatctacttcacagaaaaactcattccctctcaaa 306
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatc 855
|||| |||||||| ||||| || || || || || || ||||||||||||||
Sbjct: 305 ttacaaaaccatgagatccaagaggtatcatcaccttctgaaccactcacatc 253
Score = 71.9 bits (36), Expect = 2e-010
Identities = 90/108 (83%)
Strand = Plus / Minus
Query: 352 atgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgg 411
||||||||| || || |||||||| | |||||| |||||||||||||| || |||| ||
Sbjct: 756 atgagggaaagtagttccaaagtaagctccatcaatgttgccttggtatttagatcgcgg 697
Query: 412 atagttaagttcttcgcatttcggacaatatatcttcacagtgctcga 459
|||| || || |||||||| || || ||||||||||||||||||||
Sbjct: 696 gtagtaaatatcctcgcattttgggcagtatatcttcacagtgctcga 649
>gb|AY088075.1| Arabidopsis thaliana clone 40953 mRNA, complete sequence
Length = 1304
Score = 81.8 bits (41), Expect = 2e-013
Identities = 140/173 (80%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||||| |||||| ||
Sbjct: 616 tctaaaatgagatcaagtgcataatcatagtaaggaacttgaccactcaaaccacagaga 557
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| |||||||| || ||||| | ||||| || || ||||| |||| |||
Sbjct: 556 ttgaaatcatcttgtatataatcttcatctacttcacagaaaaactcattccctctcaaa 497
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatc 855
|||| |||||||| ||||| || || || || || || ||||||||||||||
Sbjct: 496 ttacaaaaccatgagatccaagaggtatcatcaccttctgaaccactcacatc 444
Score = 58.0 bits (29), Expect = 4e-006
Identities = 167/213 (78%)
Strand = Plus / Minus
Query: 352 atgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgg 411
||||||||| || || |||||||| | |||||| |||||||||||||| || || | ||
Sbjct: 947 atgagggaaagtagttccaaagtaagctccatcaatgttgccttggtatttagaccgcgg 888
Query: 412 atagttaagttcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatc 471
|||| || || |||||||| || || ||||||||||||||||| || || || | |||
Sbjct: 887 gtagtaaatatcctcgcattttgggcagtatatcttcacagtgctggacctcgggatatc 828
Query: 472 tgattgccctgctggaaggcagggctggccacagcagtacaccctggggcatctaccaaa 531
|||||||| | ||||| || | ||| || || ||| | || ||||||||||| || ||
Sbjct: 827 agattgcccaaccggaagacaagactgtccgcaacagaaaactctggggcatctcccgaa 768
Query: 532 gtcgtagttcttgaacttctccaacattgcagc 564
|| || ||||| ||||||||| ||| |||||
Sbjct: 767 atcataattcttatacttctccatcatagcagc 735
>gb|AC003672.3| Arabidopsis thaliana chromosome 2 clone F16B22 map m336, complete
sequence
Length = 109375
Score = 81.8 bits (41), Expect = 2e-013
Identities = 140/173 (80%)
Strand = Plus / Plus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||||| |||||| ||
Sbjct: 48157 tctaaaatgagatcaagtgcataatcatagtaaggaacttgaccactcaaaccacagaga 48216
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| |||||||| || ||||| | ||||| || || ||||| |||| |||
Sbjct: 48217 ttgaaatcatcttgtatataatcttcatctacttcacagaaaaactcattccctctcaaa 48276
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatc 855
|||| |||||||| ||||| || || || || || || ||||||||||||||
Sbjct: 48277 ttacaaaaccatgagatccaagaggtatcatcaccttctgaaccactcacatc 48329
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 425 tcgcatttcggacaatatatcttcacagtgctcga 459
|||||||| || || ||||||||||||||||||||
Sbjct: 47744 tcgcattttgggcagtatatcttcacagtgctcga 47778
>ref|NM_130032.2| Arabidopsis thaliana protein kinase CK2 regulator AT2G44680
transcript variant AT2G44680.1 mRNA, complete cds
Length = 1369
Score = 81.8 bits (41), Expect = 2e-013
Identities = 140/173 (80%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||||| |||||| ||
Sbjct: 616 tctaaaatgagatcaagtgcataatcatagtaaggaacttgaccactcaaaccacagaga 557
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| |||||||| || ||||| | ||||| || || ||||| |||| |||
Sbjct: 556 ttgaaatcatcttgtatataatcttcatctacttcacagaaaaactcattccctctcaaa 497
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatc 855
|||| |||||||| ||||| || || || || || || ||||||||||||||
Sbjct: 496 ttacaaaaccatgagatccaagaggtatcatcaccttctgaaccactcacatc 444
Score = 71.9 bits (36), Expect = 2e-010
Identities = 90/108 (83%)
Strand = Plus / Minus
Query: 352 atgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgg 411
||||||||| || || |||||||| | |||||| |||||||||||||| || |||| ||
Sbjct: 947 atgagggaaagtagttccaaagtaagctccatcaatgttgccttggtatttagatcgcgg 888
Query: 412 atagttaagttcttcgcatttcggacaatatatcttcacagtgctcga 459
|||| || || |||||||| || || ||||||||||||||||||||
Sbjct: 887 gtagtaaatatcctcgcattttgggcagtatatcttcacagtgctcga 840
>ref|NM_180090.1| Arabidopsis thaliana protein kinase CK2 regulator AT2G44680
transcript variant AT2G44680.2 mRNA, complete cds
Length = 1392
Score = 81.8 bits (41), Expect = 2e-013
Identities = 140/173 (80%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||||| |||||| ||
Sbjct: 616 tctaaaatgagatcaagtgcataatcatagtaaggaacttgaccactcaaaccacagaga 557
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| |||||||| || ||||| | ||||| || || ||||| |||| |||
Sbjct: 556 ttgaaatcatcttgtatataatcttcatctacttcacagaaaaactcattccctctcaaa 497
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatc 855
|||| |||||||| ||||| || || || || || || ||||||||||||||
Sbjct: 496 ttacaaaaccatgagatccaagaggtatcatcaccttctgaaccactcacatc 444
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 425 tcgcatttcggacaatatatcttcacagtgctcga 459
|||||||| || || ||||||||||||||||||||
Sbjct: 874 tcgcattttgggcagtatatcttcacagtgctcga 840
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 81.8 bits (41), Expect = 2e-013
Identities = 140/173 (80%)
Strand = Plus / Plus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||||| |||||| ||
Sbjct: 18434723 tctaaaatgagatcaagtgcataatcatagtaaggaacttgaccactcaaaccacagaga 18434782
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaat 802
|| |||||||| |||||||| || ||||| | ||||| || || ||||| |||| |||
Sbjct: 18434783 ttgaaatcatcttgtatataatcttcatctacttcacagaaaaactcattccctctcaaa 18434842
Query: 803 gtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatc 855
|||| |||||||| ||||| || || || || || || ||||||||||||||
Sbjct: 18434843 ttacaaaaccatgagatccaagaggtatcatcaccttctgaaccactcacatc 18434895
Score = 50.1 bits (25), Expect = 9e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcata 711
||||| |||||||||||||||||||||||
Sbjct: 18228738 tctaaaatgagatcaagtgcataatcata 18228710
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 425 tcgcatttcggacaatatatcttcacagtgctcga 459
|||||||| || || ||||||||||||||||||||
Sbjct: 18434310 tcgcattttgggcagtatatcttcacagtgctcga 18434344
>gb|AV792274.1|AV792274 AV792274 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-14-E09 3',
mRNA sequence
Length = 422
Score = 73.8 bits (37), Expect = 6e-011
Identities = 85/101 (84%)
Strand = Plus / Plus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgcct 394
|||||||||||||| ||||| || || || ||||||||||| | |||||| |||||||||
Sbjct: 317 taagtcatcaggaacagatgtggaaacgttgtcccaaagtaagctccatcaatgttgcct 376
Query: 395 tggtacttggatcttggatagttaagttcttcgcatttcgg 435
|| ||||| |||| ||| || | || ||||||||||||||
Sbjct: 377 tgatactttgatcgtgggtaataaatgtcttcgcatttcgg 417
>emb|BX830065.1|CNS0A25O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB57ZB07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1408
Score = 73.8 bits (37), Expect = 6e-011
Identities = 187/237 (78%)
Strand = Plus / Minus
Query: 422 tcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatctgattgccct 481
|||||||||||||| ||||||| ||||||||| || |||| || | |||||||| ||
Sbjct: 846 tcttcgcatttcgggcaatataccttcacagtactagatcgcggtaagtctgattgacca 787
Query: 482 gctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagttc 541
| ||||| || || ||||||||||| || || || || ||||| |||||||| |||||
Sbjct: 786 accggaagacaaggttggccacagcaataaactcttggacatcttccaaagtcatagttt 727
Query: 542 ttgaacttctccaacattgcagctagacccttgctggttaaaatgtatcgtgcatgaatt 601
||| | || || |||||||| || | || ||||| || || ||||| || ||||||||
Sbjct: 726 ttgtatttgtctaacattgctgccaatcctttgctagtcaatatgtaacgagcatgaatc 667
Query: 602 aaaccgtacagcatctctgcagatgactcgattaattcattttgctcctcggtaaac 658
| || |||| |||||| || | ||||||||| |||||||| || ||||| ||||||
Sbjct: 666 agtccatacaacatctcagctgctgactcgatcaattcattctgttcctctgtaaac 610
Score = 46.1 bits (23), Expect = 0.013
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgt 389
|||||||||||||| ||||| || || || ||||||||||| | |||||| ||||
Sbjct: 1102 taagtcatcaggaacagatgtggaaacgttgtcccaaagtaagctccatcaatgt 1048
>gb|AV546475.1|AV546475 AV546475 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL14f11F 3', mRNA sequence
Length = 534
Score = 71.9 bits (36), Expect = 2e-010
Identities = 90/108 (83%)
Strand = Plus / Plus
Query: 352 atgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatcttgg 411
||||||||| || || |||||||| | |||||| |||||||||||||| || |||| ||
Sbjct: 423 atgagggaaagtagttccaaagtaagctccatcaatgttgccttggtatttagatcgcgg 482
Query: 412 atagttaagttcttcgcatttcggacaatatatcttcacagtgctcga 459
|||| || || |||||||| || || ||||||||||||||||||||
Sbjct: 483 gtagtaaatatcctcgcattttgggcagtatatcttcacagtgctcga 530
>emb|BX822193.1|CNS0A6ZY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB19ZF05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1318
Score = 71.9 bits (36), Expect = 2e-010
Identities = 158/196 (80%), Gaps = 2/196 (1%)
Strand = Plus / Minus
Query: 683 tctaagatgagatcaagtgcataatcataatatggcacctgattactcagaccacacagg 742
||||| ||||||||||||||||||||||| || || || ||| ||| | |||||| ||
Sbjct: 560 tctaaaatgagatcaagtgcataatcatagtaagggacttgaccacttaaaccacaaaga 501
Query: 743 ttaaaatcatcctgtatatagtcatcatcgatc-tcacaaaagaattcattgcctcgcaa 801
|| |||||||| || ||||| || ||||||| | ||||| ||||| ||||| |||| |||
Sbjct: 500 ttgaaatcatcttgaatataatcttcatcgaacttcacagaagaaatcattccctctcaa 441
Query: 802 tgtac-agaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaat 860
||| | ||||| || ||||| ||||| || || ||||| || | ||||||||||||
Sbjct: 440 attacaaaaaccaagagatccacgacgtatcatcaccctccgatcaactcacatcagacc 381
Query: 861 cttcactgtcagtttc 876
||||||| ||||||||
Sbjct: 380 cttcactatcagtttc 365
Score = 44.1 bits (22), Expect = 0.053
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||||||||| |||| | ||||||||||| ||| | | ||||||||| || |||
Sbjct: 929 ggcttctgcggctttaagttcccgtaagtcatcaagaacaagttagggaatgtggttcca 870
Query: 371 aagtatgatccatc 384
||||| | ||||||
Sbjct: 869 aagtacgctccatc 856
Score = 44.1 bits (22), Expect = 0.053
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 425 tcgcatttcggacaatatatcttcacagtgctcgatct 462
|||||||| || || |||||||||||||| ||||||||
Sbjct: 818 tcgcatttagggcagtatatcttcacagtactcgatct 781
>dbj|AB025609.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K14A3
Length = 34498
Score = 69.9 bits (35), Expect = 9e-010
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 422 tcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatctgattgccct 481
|||||||||||||| |||||||||||||||||||| |||| || | |||||||| ||
Sbjct: 8141 tcttcgcatttcgggcaatatatcttcacagtgctagatcgcggtaagtctgattgacca 8200
Query: 482 gctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagtt 540
| ||||| || || ||||||||||| || || || || ||||| |||||||| |||||
Sbjct: 8201 accggaagacaaggttggccacagcaataaactcttggacatcttccaaagtcatagtt 8259
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 804 tacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatctt 863
|||| ||||| || ||||| || ||||||||||| || |||||||||||||| || ||||
Sbjct: 8748 tacaaaaccaagatatccatgaagtgtcctctccatcagaaccactcacatctgattctt 8807
Query: 864 cact 867
||||
Sbjct: 8808 cact 8811
Score = 46.1 bits (23), Expect = 0.013
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgt 389
|||||||||||||| ||||| || || || ||||||||||| | |||||| ||||
Sbjct: 7885 taagtcatcaggaacagatgtggaaacgttgtcccaaagtaagctccatcaatgt 7939
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 69.9 bits (35), Expect = 9e-010
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 422 tcttcgcatttcggacaatatatcttcacagtgctcgatctaggaacatctgattgccct 481
|||||||||||||| |||||||||||||||||||| |||| || | |||||||| ||
Sbjct: 19142528 tcttcgcatttcgggcaatatatcttcacagtgctagatcgcggtaagtctgattgacca 19142587
Query: 482 gctggaaggcagggctggccacagcagtacaccctggggcatctaccaaagtcgtagtt 540
| ||||| || || ||||||||||| || || || || ||||| |||||||| |||||
Sbjct: 19142588 accggaagacaaggttggccacagcaataaactcttggacatcttccaaagtcatagtt 19142646
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 804 tacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatctt 863
|||| ||||| || ||||| || ||||||||||| || |||||||||||||| || ||||
Sbjct: 19143135 tacaaaaccaagatatccatgaagtgtcctctccatcagaaccactcacatctgattctt 19143194
Query: 864 cact 867
||||
Sbjct: 19143195 cact 19143198
Score = 46.1 bits (23), Expect = 0.013
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgt 389
|||||||||||||| ||||| || || || ||||||||||| | |||||| ||||
Sbjct: 19142272 taagtcatcaggaacagatgtggaaacgttgtcccaaagtaagctccatcaatgt 19142326
>gb|BP791893.1|BP791893 BP791893 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-49-G08 3',
mRNA sequence
Length = 405
Score = 65.9 bits (33), Expect = 1e-008
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgcct 394
|||||||||||||| ||||| || || || ||||||||||| | |||||| |||||||||
Sbjct: 317 taagtcatcaggaacagatgtggaaacgttgtcccaaagtaagctccatcaatgttgcct 376
Query: 395 tggtacttggatc 407
|| ||||| ||||
Sbjct: 377 tgatactttgatc 389
>gb|U03984.1|ATU03984 Arabidopsis thaliana casein kinase II beta subunit CKB2 mRNA,
complete cds
Length = 1229
Score = 65.9 bits (33), Expect = 1e-008
Identities = 408/533 (76%)
Strand = Plus / Minus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
||||||| ||| ||||| || || || ||||||||||| | |||||| ||||| ||||||
Sbjct: 903 gtcatcaagaacagatgtggaaacgttgtcccaaagtaagctccatctatgtttccttgg 844
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtgctc 457
|| || |||| ||| || | | ||||| ||||| || || |||||||| || |||||
Sbjct: 843 tattttgatcgtgggtaatagacatcttcacattttgggcagtatatctttacggtgctt 784
Query: 458 gatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacaccctg 517
| |||||| | ||| ||||| || |||| | || || |||||||| || || || ||
Sbjct: 783 gctctagggatatcggattgaccaactggtaaacaaggttggccacaacaataaactctt 724
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|||||||| |||||||| ||||| ||| | || || ||||| | ||| || || |||||
Sbjct: 723 gggcatcttccaaagtcatagtttttgtatttgtctaacatagaagccagccctttgcta 664
Query: 578 gttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaat 637
|| || ||| | || |||||||| | || || ||||||||||| | ||||||||| |||
Sbjct: 663 gtcaatatgaaacgagcatgaatcattccatatagcatctctgctgctgactcgatcaat 604
Query: 638 tcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatca 697
||||| || ||||| |||||| ||| ||| |||||||| | || || || | ||||
Sbjct: 603 tcattctgttcctctgtaaacatctcaccatgcgaagactccacatccaaaatcaaatca 544
Query: 698 agtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgt 757
|| ||||| || || || || || |||| || || ||||||| |||||| ||||||||
Sbjct: 543 agggcatagtcgtagtaaggaacttgatggctgagtccacacaagttaaagtcatcctgg 484
Query: 758 atatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaa 817
|| || |||||||| | ||||| ||||| || || || || | | |||||||| ||
Sbjct: 483 atgtaatcatcatcaacttcacagaagaactcgttcccacgaaggttgcagaaccaagat 424
Query: 818 atccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtc 870
||||| || ||||||||||| || |||||||| || || || ||||| |||||
Sbjct: 423 atccacgaggtgtcctctccatcagaaccactgacctctgattcttcgctgtc 371
>gb|BT005279.1| Arabidopsis thaliana At4g17640 mRNA, complete cds
Length = 849
Score = 65.9 bits (33), Expect = 1e-008
Identities = 408/533 (76%)
Strand = Plus / Minus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
||||||| ||| ||||| || || || ||||||||||| | |||||| ||||| ||||||
Sbjct: 770 gtcatcaagaacagatgtggaaacgttgtcccaaagtaagctccatctatgtttccttgg 711
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtgctc 457
|| || |||| ||| || | | ||||| ||||| || || |||||||| || |||||
Sbjct: 710 tattttgatcgtgggtaatagacatcttcacattttgggcagtatatctttacggtgctt 651
Query: 458 gatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacaccctg 517
| |||||| | ||| ||||| || |||| | || || |||||||| || || || ||
Sbjct: 650 gctctagggatatcggattgaccaactggtaaacaaggttggccacaacaataaactctt 591
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|||||||| |||||||| ||||| ||| | || || ||||| | ||| || || |||||
Sbjct: 590 gggcatcttccaaagtcatagtttttgtatttgtctaacatagaagccagccctttgcta 531
Query: 578 gttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaat 637
|| || ||| | || |||||||| | || || ||||||||||| | ||||||||| |||
Sbjct: 530 gtcaatatgaaacgagcatgaatcattccatatagcatctctgctgctgactcgatcaat 471
Query: 638 tcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatca 697
||||| || ||||| |||||| ||| ||| |||||||| | || || || | ||||
Sbjct: 470 tcattctgttcctctgtaaacatctcaccatgcgaagactccacatccaaaatcaaatca 411
Query: 698 agtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgt 757
|| ||||| || || || || || |||| || || ||||||| |||||| ||||||||
Sbjct: 410 agggcatagtcgtagtaaggaacttgatggctgagtccacacaagttaaagtcatcctgg 351
Query: 758 atatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaa 817
|| || |||||||| | ||||| ||||| || || || || | | |||||||| ||
Sbjct: 350 atgtaatcatcatcaacttcacagaagaactcgttcccacgaaggttgcagaaccaagat 291
Query: 818 atccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtc 870
||||| || ||||||||||| || |||||||| || || || ||||| |||||
Sbjct: 290 atccacgaggtgtcctctccatcagaaccactgacctctgattcttcgctgtc 238
>gb|AY085899.1| Arabidopsis thaliana clone 19505 mRNA, complete sequence
Length = 1329
Score = 65.9 bits (33), Expect = 1e-008
Identities = 408/533 (76%)
Strand = Plus / Minus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
||||||| ||| ||||| || || || ||||||||||| | |||||| ||||| ||||||
Sbjct: 1011 gtcatcaagaacagatgtggaaacgttgtcccaaagtaagctccatctatgtttccttgg 952
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtgctc 457
|| || |||| ||| || | | ||||| ||||| || || |||||||| || |||||
Sbjct: 951 tattttgatcgtgggtaatagacatcttcacattttgggcagtatatctttacggtgctt 892
Query: 458 gatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacaccctg 517
| |||||| | ||| ||||| || |||| | || || |||||||| || || || ||
Sbjct: 891 gctctagggatatcggattgaccaactggtaaacaaggttggccacaacaataaactctt 832
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|||||||| |||||||| ||||| ||| | || || ||||| | ||| || || |||||
Sbjct: 831 gggcatcttccaaagtcatagtttttgtatttgtctaacatagaagccagccctttgcta 772
Query: 578 gttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaat 637
|| || ||| | || |||||||| | || || ||||||||||| | ||||||||| |||
Sbjct: 771 gtcaatatgaaacgagcatgaatcattccatatagcatctctgctgctgactcgatcaat 712
Query: 638 tcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatca 697
||||| || ||||| |||||| ||| ||| |||||||| | || || || | ||||
Sbjct: 711 tcattctgttcctctgtaaacatctcaccatgcgaagactccacatccaaaatcaaatca 652
Query: 698 agtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgt 757
|| ||||| || || || || || |||| || || ||||||| |||||| ||||||||
Sbjct: 651 agggcatagtcgtagtaaggaacttgatggctgagtccacacaagttaaagtcatcctgg 592
Query: 758 atatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaa 817
|| || |||||||| | ||||| ||||| || || || || | | |||||||| ||
Sbjct: 591 atgtaatcatcatcaacttcacagaagaactcgttcccacgaaggttgcagaaccaagat 532
Query: 818 atccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtc 870
||||| || ||||||||||| || |||||||| || || || ||||| |||||
Sbjct: 531 atccacgaggtgtcctctccatcagaaccactgacctctgattcttcgctgtc 479
>emb|BX827683.1|CNS0A2YU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH10ZB06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1166
Score = 65.9 bits (33), Expect = 1e-008
Identities = 408/533 (76%)
Strand = Plus / Minus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
||||||| ||| ||||| || || || ||||||||||| | |||||| ||||| ||||||
Sbjct: 803 gtcatcaagaacagatgtggaaacgttgtcccaaagtaagctccatctatgtttccttgg 744
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtgctc 457
|| || |||| ||| || | | ||||| ||||| || || |||||||| || |||||
Sbjct: 743 tattttgatcgtgggtaatagacatcttcacattttgggcagtatatctttacggtgctt 684
Query: 458 gatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacaccctg 517
| |||||| | ||| ||||| || |||| | || || |||||||| || || || ||
Sbjct: 683 gctctagggatatcggattgaccaactggtaaacaaggttggccacaacaataaactctt 624
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|||||||| |||||||| ||||| ||| | || || ||||| | ||| || || |||||
Sbjct: 623 gggcatcttccaaagtcatagtttttgtatttgtctaacatagaagccagccctttgcta 564
Query: 578 gttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaat 637
|| || ||| | || |||||||| | || || ||||||||||| | ||||||||| |||
Sbjct: 563 gtcaatatgaaacgagcatgaatcattccatatagcatctctgctgctgactcgatcaat 504
Query: 638 tcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatca 697
||||| || ||||| |||||| ||| ||| |||||||| | || || || | ||||
Sbjct: 503 tcattctgttcctctgtaaacatctcaccatgcgaagactccacatccaaaatcaaatca 444
Query: 698 agtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgt 757
|| ||||| || || || || || |||| || || ||||||| |||||| ||||||||
Sbjct: 443 agggcatagtcgtagtaaggaacttgatggctgagtccacacaagttaaagtcatcctgg 384
Query: 758 atatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaa 817
|| || |||||||| | ||||| ||||| || || || || | | |||||||| ||
Sbjct: 383 atgtaatcatcatcaacttcacagaagaactcgttcccacgaaggttgcagaaccaagat 324
Query: 818 atccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtc 870
||||| || ||||||||||| || |||||||| || || || ||||| |||||
Sbjct: 323 atccacgaggtgtcctctccatcagaaccactgacctctgattcttcgctgtc 271
>dbj|AK119067.1| Arabidopsis thaliana At4g17640 mRNA for putative casein kinase II
beta chain CKB2, complete cds, clone: RAFL21-41-H19
Length = 1212
Score = 65.9 bits (33), Expect = 1e-008
Identities = 408/533 (76%)
Strand = Plus / Minus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
||||||| ||| ||||| || || || ||||||||||| | |||||| ||||| ||||||
Sbjct: 850 gtcatcaagaacagatgtggaaacgttgtcccaaagtaagctccatctatgtttccttgg 791
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtgctc 457
|| || |||| ||| || | | ||||| ||||| || || |||||||| || |||||
Sbjct: 790 tattttgatcgtgggtaatagacatcttcacattttgggcagtatatctttacggtgctt 731
Query: 458 gatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacaccctg 517
| |||||| | ||| ||||| || |||| | || || |||||||| || || || ||
Sbjct: 730 gctctagggatatcggattgaccaactggtaaacaaggttggccacaacaataaactctt 671
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|||||||| |||||||| ||||| ||| | || || ||||| | ||| || || |||||
Sbjct: 670 gggcatcttccaaagtcatagtttttgtatttgtctaacatagaagccagccctttgcta 611
Query: 578 gttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaat 637
|| || ||| | || |||||||| | || || ||||||||||| | ||||||||| |||
Sbjct: 610 gtcaatatgaaacgagcatgaatcattccatatagcatctctgctgctgactcgatcaat 551
Query: 638 tcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatca 697
||||| || ||||| |||||| ||| ||| |||||||| | || || || | ||||
Sbjct: 550 tcattctgttcctctgtaaacatctcaccatgcgaagactccacatccaaaatcaaatca 491
Query: 698 agtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgt 757
|| ||||| || || || || || |||| || || ||||||| |||||| ||||||||
Sbjct: 490 agggcatagtcgtagtaaggaacttgatggctgagtccacacaagttaaagtcatcctgg 431
Query: 758 atatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaa 817
|| || |||||||| | ||||| ||||| || || || || | | |||||||| ||
Sbjct: 430 atgtaatcatcatcaacttcacagaagaactcgttcccacgaaggttgcagaaccaagat 371
Query: 818 atccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtc 870
||||| || ||||||||||| || |||||||| || || || ||||| |||||
Sbjct: 370 atccacgaggtgtcctctccatcagaaccactgacctctgattcttcgctgtc 318
>ref|NM_117872.2| Arabidopsis thaliana CKB2; protein kinase CK2 regulator AT4G17640
(CKB2) mRNA, complete cds
Length = 1374
Score = 65.9 bits (33), Expect = 1e-008
Identities = 408/533 (76%)
Strand = Plus / Minus
Query: 338 gtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttgg 397
||||||| ||| ||||| || || || ||||||||||| | |||||| ||||| ||||||
Sbjct: 1011 gtcatcaagaacagatgtggaaacgttgtcccaaagtaagctccatctatgtttccttgg 952
Query: 398 tacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtgctc 457
|| || |||| ||| || | | ||||| ||||| || || |||||||| || |||||
Sbjct: 951 tattttgatcgtgggtaatagacatcttcacattttgggcagtatatctttacggtgctt 892
Query: 458 gatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacaccctg 517
| |||||| | ||| ||||| || |||| | || || |||||||| || || || ||
Sbjct: 891 gctctagggatatcggattgaccaactggtaaacaaggttggccacaacaataaactctt 832
Query: 518 gggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttgctg 577
|||||||| |||||||| ||||| ||| | || || ||||| | ||| || || |||||
Sbjct: 831 gggcatcttccaaagtcatagtttttgtatttgtctaacatagaagccagccctttgcta 772
Query: 578 gttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgattaat 637
|| || ||| | || |||||||| | || || ||||||||||| | ||||||||| |||
Sbjct: 771 gtcaatatgaaacgagcatgaatcattccatatagcatctctgctgctgactcgatcaat 712
Query: 638 tcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgagatca 697
||||| || ||||| |||||| ||| ||| |||||||| | || || || | ||||
Sbjct: 711 tcattctgttcctctgtaaacatctcaccatgcgaagactccacatccaaaatcaaatca 652
Query: 698 agtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctgt 757
|| ||||| || || || || || |||| || || ||||||| |||||| ||||||||
Sbjct: 651 agggcatagtcgtagtaaggaacttgatggctgagtccacacaagttaaagtcatcctgg 592
Query: 758 atatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaa 817
|| || |||||||| | ||||| ||||| || || || || | | |||||||| ||
Sbjct: 591 atgtaatcatcatcaacttcacagaagaactcgttcccacgaaggttgcagaaccaagat 532
Query: 818 atccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtc 870
||||| || ||||||||||| || |||||||| || || || ||||| |||||
Sbjct: 531 atccacgaggtgtcctctccatcagaaccactgacctctgattcttcgctgtc 479
>gb|AI996697.1|AI996697 701667982 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana
cDNA clone 701667982, mRNA sequence
Length = 603
Score = 61.9 bits (31), Expect = 2e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||||||||| |||| | ||||||||||| ||| | ||||||||||| || |||
Sbjct: 430 ggcttctgcggctttaagttcccgtaagtcatcaagaacaagtgagggaatgtggttcca 489
Query: 371 aagtatgatccatcgatgttgccttgg 397
||||| | |||||| || |||||||||
Sbjct: 490 aagtacgctccatcaatattgccttgg 516
>gb|Z34116.1|Z34116 ATTS3150 Grenoble-B Arabidopsis thaliana cDNA clone GBGe351 5',
mRNA sequence
Length = 249
Score = 60.0 bits (30), Expect = 9e-007
Identities = 90/110 (81%)
Strand = Plus / Minus
Query: 767 tcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatgaaatccaggac 826
||||||| ||||| ||||| ||||| |||| ||| |||| ||||| || ||||| |||
Sbjct: 242 tcatcgacttcacagaagaaatcattccctctcaaattacaaaaccaagagatccacgac 183
Query: 827 gtgtcctctccctcggaaccactcacatcagaatcttcactgtcagtttc 876
|| || || ||||| || |||||||||||||| ||||||| ||||||||
Sbjct: 182 gtatcatcaccctccgatccactcacatcagacccttcactatcagtttc 133
>gb|T45841.1|T45841 9104 Lambda-PRL2 Arabidopsis thaliana cDNA clone 132O22T7, mRNA
sequence
Length = 386
Score = 60.0 bits (30), Expect = 9e-007
Identities = 147/188 (78%)
Strand = Plus / Minus
Query: 689 atgagatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaa 748
||||| | ||||| ||||||||| || || || ||| ||| | |||||| || || |||
Sbjct: 235 atgagntnaagtgnataatcatagtaagggacttgaccacttaaaccacaaagattgaaa 176
Query: 749 tcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacag 808
||||| || ||||| || ||||||| | ||| ||||| | ||| |||| ||| ||||
Sbjct: 175 tcatcttgaatataatcttcatcgacttnacagaagaaatnattccctctcaaattacaa 116
Query: 809 aaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactg 868
||||| || ||||| ||||| || || ||||| || |||||||||||||| ||| |||
Sbjct: 115 aaccaagagatccacgacgtatcatcaccctccgatccactcacatcagacccttnacta 56
Query: 869 tcagtttc 876
||||||||
Sbjct: 55 tcagtttc 48
>gb|BE526951.1|BE526951 M66B05STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600035617R1 5', mRNA sequence
Length = 259
Score = 60.0 bits (30), Expect = 9e-007
Identities = 129/162 (79%)
Strand = Plus / Minus
Query: 497 tggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctccaac 556
|||||||| || || || || |||||||| |||||||| ||||| ||| | || || |||
Sbjct: 174 tggccacaacaataaactcttgggcatcttccaaagtcatagtttttgtatttgtctaac 115
Query: 557 attgcagctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatc 616
|| | ||| || || ||||| || || ||| | || |||||||| | || || ||||||
Sbjct: 114 atagaagccagccctttgctagtcaatatgaaacgagcatgaatcattccatatagcatc 55
Query: 617 tctgcagatgactcgattaattcattttgctcctcggtaaac 658
||||| | ||||||||| |||||||| |||||||| ||||||
Sbjct: 54 tctgctgctgactcgatcaattcattctgctcctctgtaaac 13
>gb|BH911167.1|BH911167 SALK_065565.53.45.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_065565.53.45.x,
DNA sequence
Length = 463
Score = 56.0 bits (28), Expect = 1e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 422 tcttcgcatttcggacaatatatcttcacagt 453
|||||||||||||| |||||||||||||||||
Sbjct: 32 tcttcgcatttcgggcaatatatcttcacagt 1
Score = 46.1 bits (23), Expect = 0.013
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgt 389
|||||||||||||| ||||| || || || ||||||||||| | |||||| ||||
Sbjct: 288 taagtcatcaggaacagatgtggaaacgttgtcccaaagtaagctccatcaatgt 234
>gb|AV825757.1|AV825757 AV825757 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-14-E09 5',
mRNA sequence
Length = 614
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 804 tacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatctt 863
|||| ||||| || ||||| || ||||||||||| || |||||||||||||| || ||||
Sbjct: 471 tacaaaaccaagatatccatgaagtgtcctctccatcagaaccactcacatctgattctt 412
Query: 864 cact 867
||||
Sbjct: 411 cact 408
>emb|BX832248.1|CNS0A285 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH60ZH08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1837
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 804 tacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatctt 863
|||| ||||| || ||||| || ||||||||||| || |||||||||||||| || ||||
Sbjct: 641 tacaaaaccaagatatccatgaagtgtcctctccatcagaaccactcacatctgattctt 582
Query: 864 cact 867
||||
Sbjct: 581 cact 578
Score = 46.1 bits (23), Expect = 0.013
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgt 389
|||||||||||||| ||||| || || || ||||||||||| | |||||| ||||
Sbjct: 1423 taagtcatcaggaacagatgtggaaacgttgtcccaaagtaagctccatcaatgt 1369
>gb|CC797462.1|CC797462 SALK_144967.54.25.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_144967.54.25.x,
DNA sequence
Length = 415
Score = 54.0 bits (27), Expect = 6e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 809 aaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcact 867
||||| || ||||| || ||||||||||| || |||||||||||||| || ||||||||
Sbjct: 2 aaccaagatatccatgaagtgtcctctccatcagaaccactcacatctgattcttcact 60
>gb|CW795532.1|CW795532 WiscDsLox449D01 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 838
Score = 52.0 bits (26), Expect = 2e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 311 ggcttctgcggcttcaagtgcgagtaagtcatcaggaaaagatgagggaatgtcgtccca 370
|||||||||||||| |||| | ||||||||||| ||| | ||||||||||| || |||
Sbjct: 372 ggcttctgcggctttaagttcccgtaagtcatcaagaacaagtgagggaatgtggttcca 431
Query: 371 aagtatgatccatc 384
||||| | ||||||
Sbjct: 432 aagtacgctccatc 445
Score = 44.1 bits (22), Expect = 0.053
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 425 tcgcatttcggacaatatatcttcacagtgctcgatct 462
|||||||| || || |||||||||||||| ||||||||
Sbjct: 634 tcgcatttagggcagtatatcttcacagtactcgatct 671
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 452,557
Number of Sequences: 1013581
Number of extensions: 452557
Number of successful extensions: 32804
Number of sequences better than 0.5: 66
Number of HSP's better than 0.5 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31666
Number of HSP's gapped (non-prelim): 1123
length of query: 1153
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1133
effective length of database: 888,669,252
effective search space: 1006862262516
effective search space used: 1006862262516
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)