BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131572.2.3
(1521 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 58 5e-006
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 0.001
emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 0.001
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 50 0.001
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 50 0.001
gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Rev... 50 0.001
gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudo... 50 0.001
gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudo... 50 0.001
gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasi... 50 0.001
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 50 0.001
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 50 0.001
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 50 0.001
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 50 0.001
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 50 0.001
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 48 0.005
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 48 0.005
gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasi... 48 0.005
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 48 0.005
emb|AX505609.1| Sequence 304 from Patent WO0216655 48 0.005
emb|AX507774.1| Sequence 2469 from Patent WO0216655 48 0.005
gb|CB185793.2|CB185793 EST00720 Arabidopsis avirulent Pseud... 46 0.018
gb|CB185942.1|CB185942 EST01133 Arabidopsis virulent Pseudo... 46 0.018
gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudo... 46 0.018
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 46 0.018
gb|U58918.1|ATU58918 Arabidopsis thaliana MEK kinase (MAP3K... 46 0.018
emb|AJ010090.1|ATH010090 Arabidopsis thaliana mRNA for MAP3... 46 0.018
emb|CS137270.1| Sequence 241 from Patent WO2005047516 46 0.018
emb|AJ595464.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.070
emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.070
gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone For... 44 0.070
gb|CF772990.1|CF772990 AG_FSL_10G03 Arabidopsis ag-1 35S:AG... 44 0.070
gb|AC027034.10|AC027034 Arabidopsis thaliana chromosome 1 B... 44 0.070
emb|AJ272202.1|ATH272202 Arabidopsis thaliana mRNA for mito... 44 0.070
emb|AJ293797.1|ATH293797 Arabidopsis thaliana mRNA for SC35... 44 0.070
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 44 0.070
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 44 0.070
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 42 0.28
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 58.0 bits (29), Expect = 5e-006
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1493 ccgcgtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||||||
Sbjct: 274 ccgcgtacctgcccgggcggccgctcgaa 302
>emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequence GK-708B12-022965,
genomic survey sequence
Length = 378
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 51 gtacctgcccgggcggccgctcgaa 27
>emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequence GK-708H07-022965,
genomic survey sequence
Length = 416
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 52 gtacctgcccgggcggccgctcgaa 28
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to small
nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 239 gtacctgcccgggcggccgctcgaa 263
>gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA9, mRNA sequence
Length = 328
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 304 gtacctgcccgggcggccgctcgaa 328
>gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtaOzHC2 similar to Lhca2
chlorophyll a/b-binding protein, mRNA sequence
Length = 450
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 81 gtacctgcccgggcggccgctcgaa 57
>gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudomonas syringae subtracted library
Arabidopsis thaliana cDNA clone DC4-H4 similar to
putative protein with homology to rubisco small subunit,
mRNA sequence
Length = 370
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 84 gtacctgcccgggcggccgctcgaa 60
>gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudomonas syringae subtracted library
Arabidopsis thaliana cDNA clone DC1-C2 similar to
putative tyrosine aminotransferase, mRNA sequence
Length = 579
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 59 gtacctgcccgggcggccgctcgaa 35
>gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RAA10 similar to chlorophyll a/b-binding
protein, mRNA sequence
Length = 527
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 366 gtacctgcccgggcggccgctcgaa 390
>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 421
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 397 gtacctgcccgggcggccgctcgaa 421
>gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EB10, mRNA sequence
Length = 406
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 382 gtacctgcccgggcggccgctcgaa 406
>gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLC01 similar to PSII 32Kda protein, mRNA
sequence
Length = 358
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 329 gtacctgcccgggcggccgctcgaa 353
>gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH04 similar to PsbA gene in chloroplast
genome, mRNA sequence
Length = 360
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 332 gtacctgcccgggcggccgctcgaa 356
>gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EH12 similar to putative protein, mRNA sequence
Length = 271
Score = 50.1 bits (25), Expect = 0.001
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||||
Sbjct: 247 gtacctgcccgggcggccgctcgaa 271
>gb|CB074186.1|CB074186 EST02508 Early Ovule Development Forward Subtracted Library
Arabidopsis thaliana cDNA clone 1D17G5 similar to blue
copper protein, mRNA sequence
Length = 149
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 33 gtacctgcccgggcggccgctcga 10
>gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BB7 similar to PUTATIVE PROTEIN, mRNA sequence
Length = 320
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 213 gtacctgcccgggcggccgctcga 236
>gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-AA5 similar to NAD dependent epimerase, mRNA
sequence
Length = 601
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 452 gtacctgcccgggcggccgctcga 475
>gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D03, mRNA sequence
Length = 640
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 123 gtacctgcccgggcggccgctcga 146
>emb|AX505609.1| Sequence 304 from Patent WO0216655
Length = 414
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1498 tacctgcccgggcggccgctcgaa 1521
||||||||||||||||||||||||
Sbjct: 29 tacctgcccgggcggccgctcgaa 6
>emb|AX507774.1| Sequence 2469 from Patent WO0216655
Length = 238
Score = 48.1 bits (24), Expect = 0.005
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1497 gtacctgcccgggcggccgctcga 1520
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|CB185793.2|CB185793 EST00720 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone RPM3-G9 similar
to ARF GAP-like zinc finger-containing protein (ZIGA2),
mRNA sequence
Length = 746
Score = 46.1 bits (23), Expect = 0.018
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||
Sbjct: 69 acctgcccgggcggccgctcgaa 47
>gb|CB185942.1|CB185942 EST01133 Arabidopsis virulent Pseudomonas syringae subtracted library
Arabidopsis thaliana cDNA clone DC8-G7 similar to
putative 60S ribosomal protein L18, mRNA sequence
Length = 602
Score = 46.1 bits (23), Expect = 0.018
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||
Sbjct: 68 acctgcccgggcggccgctcgaa 46
>gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudomonas syringae subtracted library
Arabidopsis thaliana cDNA clone DC8-H5 similar to WD
repeat domain containing protein, mRNA sequence
Length = 473
Score = 46.1 bits (23), Expect = 0.018
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1499 acctgcccgggcggccgctcgaa 1521
|||||||||||||||||||||||
Sbjct: 339 acctgcccgggcggccgctcgaa 361
>gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RBC07 similar to PSI subunit, mRNA sequence
Length = 249
Score = 46.1 bits (23), Expect = 0.018
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcg 1519
|||||||||||||||||||||||
Sbjct: 224 gtacctgcccgggcggccgctcg 246
>gb|U58918.1|ATU58918 Arabidopsis thaliana MEK kinase (MAP3Ka) mRNA, complete cds
Length = 2267
Score = 46.1 bits (23), Expect = 0.018
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 36 tacctgcccgggcggccgctcga 14
>emb|AJ010090.1|ATH010090 Arabidopsis thaliana mRNA for MAP3K alpha protein kinase
Length = 2189
Score = 46.1 bits (23), Expect = 0.018
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 36 tacctgcccgggcggccgctcga 14
>emb|CS137270.1| Sequence 241 from Patent WO2005047516
Length = 1371
Score = 46.1 bits (23), Expect = 0.018
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1498 tacctgcccgggcggccgctcga 1520
|||||||||||||||||||||||
Sbjct: 276 tacctgcccgggcggccgctcga 254
Score = 44.1 bits (22), Expect = 0.070
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcga 1520
||||||||||||||||||||||
Sbjct: 170 acctgcccgggcggccgctcga 149
>emb|AJ595464.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
417C12, genomic survey sequence
Length = 541
Score = 44.1 bits (22), Expect = 0.070
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1499 acctgcccgggcggccgctcga 1520
||||||||||||||||||||||
Sbjct: 1 acctgcccgggcggccgctcga 22
>emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequence GK-712A09-022963,
genomic survey sequence
Length = 278
Score = 44.1 bits (22), Expect = 0.070
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctc 1518
||||||||||||||||||||||
Sbjct: 199 gtacctgcccgggcggccgctc 220
>gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone Forward-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzD61, mRNA sequence
Length = 255
Score = 44.1 bits (22), Expect = 0.070
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctc 1518
||||||||||||||||||||||
Sbjct: 170 gtacctgcccgggcggccgctc 191
>gb|CF772990.1|CF772990 AG_FSL_10G03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10G03, mRNA sequence
Length = 329
Score = 44.1 bits (22), Expect = 0.070
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1497 gtacctgcccgggcggccgctcgaa 1521
|||||||||||||||| ||||||||
Sbjct: 290 gtacctgcccgggcggncgctcgaa 314
>gb|AC027034.10|AC027034 Arabidopsis thaliana chromosome 1 BAC F7A10 genomic sequence, complete
sequence
Length = 101954
Score = 44.1 bits (22), Expect = 0.070
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 297 cacacacatacatatatgtatgtaaatatatatgtata 334
||||||||||||||||| ||| || |||||||| ||||
Sbjct: 52605 cacacacatacatatatatatatatatatatatatata 52568
>emb|AJ272202.1|ATH272202 Arabidopsis thaliana mRNA for mitochondrial half-ABC transporter
(STA1 gene)
Length = 2452
Score = 44.1 bits (22), Expect = 0.070
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1499 acctgcccgggcggccgctcga 1520
||||||||||||||||||||||
Sbjct: 2394 acctgcccgggcggccgctcga 2415
>emb|AJ293797.1|ATH293797 Arabidopsis thaliana mRNA for SC35-like splicing factor SCL28, 28 kD
Length = 1122
Score = 44.1 bits (22), Expect = 0.070
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1499 acctgcccgggcggccgctcga 1520
||||||||||||||||||||||
Sbjct: 36 acctgcccgggcggccgctcga 15
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 44.1 bits (22), Expect = 0.070
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 297 cacacacatacatatatgtatgtaaatatatatgtata 334
||||||||||||||||| ||| || |||||||| ||||
Sbjct: 4985249 cacacacatacatatatatatatatatatatatatata 4985286
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 44.1 bits (22), Expect = 0.070
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 297 cacacacatacatatatgtatgtaaatatatatgtata 334
||||||||||||||||| ||| || |||||||| ||||
Sbjct: 20629483 cacacacatacatatatatatatatatatatatatata 20629520
>gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone AVR2-A8 similar
to hypothetical protein targeted to chloroplast, mRNA
sequence
Length = 456
Score = 42.1 bits (21), Expect = 0.28
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1496 cgtacctgcccgggcggccgc 1516
|||||||||||||||||||||
Sbjct: 435 cgtacctgcccgggcggccgc 455
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 588,538
Number of Sequences: 1013581
Number of extensions: 588538
Number of successful extensions: 48564
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47957
Number of HSP's gapped (non-prelim): 607
length of query: 1521
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1500
effective length of database: 887,655,671
effective search space: 1331483506500
effective search space used: 1331483506500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)