BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131555.2.3
         (622 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AE005172.1|  Arabidopsis thaliana chromosome 1, top arm c...    40   0.44 
emb|AJ520381.1|ATH520381  Arabidopsis thaliana T-DNA flankin...    40   0.44 
gb|AC013482.2|AC013482  Genomic sequence for Arabidopsis tha...    40   0.44 
ref|NC_003070.5|  Arabidopsis thaliana chromosome 1, complet...    40   0.44 

>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
          Length = 14221815

 Score = 40.1 bits (20), Expect = 0.44
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 388     tcttccacaaaatttttggg 407
               ||||||||||||||||||||
Sbjct: 7699626 tcttccacaaaatttttggg 7699607



>emb|AJ520381.1|ATH520381 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
           030C12
          Length = 233

 Score = 40.1 bits (20), Expect = 0.44
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 388 tcttccacaaaatttttggg 407
           ||||||||||||||||||||
Sbjct: 191 tcttccacaaaatttttggg 172



>gb|AC013482.2|AC013482 Genomic sequence for Arabidopsis thaliana BAC T26F17 from chromosome I,
             complete sequence
          Length = 82875

 Score = 40.1 bits (20), Expect = 0.44
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   tcttccacaaaatttttggg 407
             ||||||||||||||||||||
Sbjct: 45595 tcttccacaaaatttttggg 45576



>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
          Length = 30432563

 Score = 40.1 bits (20), Expect = 0.44
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 388     tcttccacaaaatttttggg 407
               ||||||||||||||||||||
Sbjct: 7699801 tcttccacaaaatttttggg 7699782



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 289,028
Number of Sequences: 1013581
Number of extensions: 289028
Number of successful extensions: 20482
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20245
Number of HSP's gapped (non-prelim): 237
length of query: 622
length of database: 908,940,872
effective HSP length: 20
effective length of query: 602
effective length of database: 888,669,252
effective search space: 534978889704
effective search space used: 534978889704
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)