BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.12
(621 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP607772.1|BP607772 BP607772 RAFL16 Arabidopsis thaliana... 100 6e-019
gb|AI996189.1|AI996189 701550514 A. thaliana, Columbia Col-... 98 2e-018
gb|AV787917.1|AV787917 AV787917 RAFL6 Arabidopsis thaliana ... 98 2e-018
gb|AV789685.1|AV789685 AV789685 RAFL6 Arabidopsis thaliana ... 98 2e-018
gb|AV790204.1|AV790204 AV790204 RAFL6 Arabidopsis thaliana ... 98 2e-018
gb|BP567189.1|BP567189 BP567189 RAFL14 Arabidopsis thaliana... 98 2e-018
gb|BP570306.1|BP570306 BP570306 RAFL14 Arabidopsis thaliana... 98 2e-018
gb|BP573487.1|BP573487 BP573487 RAFL14 Arabidopsis thaliana... 98 2e-018
gb|BP573892.1|BP573892 BP573892 RAFL14 Arabidopsis thaliana... 98 2e-018
gb|BP584403.1|BP584403 BP584403 RAFL14 Arabidopsis thaliana... 98 2e-018
gb|BP594318.1|BP594318 BP594318 RAFL15 Arabidopsis thaliana... 98 2e-018
gb|BP627061.1|BP627061 BP627061 RAFL17 Arabidopsis thaliana... 98 2e-018
gb|BP651308.1|BP651308 BP651308 RAFL19 Arabidopsis thaliana... 98 2e-018
gb|BP670437.1|BP670437 BP670437 RAFL21 Arabidopsis thaliana... 98 2e-018
gb|BP793485.1|BP793485 BP793485 RAFL7 Arabidopsis thaliana ... 98 2e-018
gb|BP794770.1|BP794770 BP794770 RAFL7 Arabidopsis thaliana ... 98 2e-018
gb|BP798064.1|BP798064 BP798064 RAFL14 Arabidopsis thaliana... 98 2e-018
gb|BP812426.1|BP812426 BP812426 RAFL19 Arabidopsis thaliana... 98 2e-018
gb|BP823891.1|BP823891 BP823891 RAFL19 Arabidopsis thaliana... 98 2e-018
gb|BP860269.1|BP860269 BP860269 RAFL21 Arabidopsis thaliana... 98 2e-018
gb|AY087083.1| Arabidopsis thaliana clone 315 mRNA, complet... 98 2e-018
ref|NM_111550.2| Arabidopsis thaliana structural constituen... 98 2e-018
ref|NM_001035573.1| Arabidopsis thaliana structural constit... 98 2e-018
ref|NM_001035574.1| Arabidopsis thaliana structural constit... 98 2e-018
gb|T45129.1|T45129 8392 Lambda-PRL2 Arabidopsis thaliana cD... 90 5e-016
gb|T46465.1|T46465 9728 Lambda-PRL2 Arabidopsis thaliana cD... 90 5e-016
gb|BP566212.1|BP566212 BP566212 RAFL14 Arabidopsis thaliana... 90 5e-016
gb|BP578867.1|BP578867 BP578867 RAFL14 Arabidopsis thaliana... 90 5e-016
gb|BP590939.1|BP590939 BP590939 RAFL15 Arabidopsis thaliana... 90 5e-016
gb|BP624148.1|BP624148 BP624148 RAFL17 Arabidopsis thaliana... 90 5e-016
gb|BP624538.1|BP624538 BP624538 RAFL17 Arabidopsis thaliana... 90 5e-016
gb|BP659569.1|BP659569 BP659569 RAFL19 Arabidopsis thaliana... 90 5e-016
gb|BP801924.1|BP801924 BP801924 RAFL14 Arabidopsis thaliana... 90 5e-016
gb|BP850536.1|BP850536 BP850536 RAFL21 Arabidopsis thaliana... 90 5e-016
gb|BP859109.1|BP859109 BP859109 RAFL21 Arabidopsis thaliana... 90 5e-016
gb|BP861973.1|BP861973 BP861973 RAFL21 Arabidopsis thaliana... 90 5e-016
gb|BP565017.1|BP565017 BP565017 RAFL14 Arabidopsis thaliana... 88 2e-015
gb|BP585210.1|BP585210 BP585210 RAFL15 Arabidopsis thaliana... 86 8e-015
gb|BP589709.1|BP589709 BP589709 RAFL15 Arabidopsis thaliana... 84 3e-014
gb|AV782445.1|AV782445 AV782445 RAFL4 Arabidopsis thaliana ... 82 1e-013
gb|AV821876.1|AV821876 AV821876 RAFL4 Arabidopsis thaliana ... 82 1e-013
gb|AV544641.1|AV544641 AV544641 Arabidopsis thaliana roots ... 82 1e-013
gb|BP662193.1|BP662193 BP662193 RAFL21 Arabidopsis thaliana... 82 1e-013
gb|BP862005.1|BP862005 BP862005 RAFL21 Arabidopsis thaliana... 82 1e-013
gb|BP863856.1|BP863856 BP863856 RAFL21 Arabidopsis thaliana... 82 1e-013
gb|AF386978.1|AF386978 Arabidopsis thaliana ribosomal prote... 82 1e-013
emb|BX822483.1|CNS0A7SG Arabidopsis thaliana Full-length cD... 82 1e-013
gb|BP586350.1|BP586350 BP586350 RAFL15 Arabidopsis thaliana... 80 5e-013
gb|BT002608.1| Arabidopsis thaliana ribosomal protein L29, ... 80 5e-013
gb|AC036106.6|AC036106 Arabidopsis thaliana chromosome 3 BA... 80 5e-013
gb|AC023912.5|ATAC023912 Arabidopsis thaliana chromosome II... 80 5e-013
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 80 5e-013
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 80 5e-013
gb|BP623821.1|BP623821 BP623821 RAFL17 Arabidopsis thaliana... 78 2e-012
gb|BP669325.1|BP669325 BP669325 RAFL21 Arabidopsis thaliana... 78 2e-012
gb|BP798816.1|BP798816 BP798816 RAFL14 Arabidopsis thaliana... 78 2e-012
gb|BP570914.1|BP570914 BP570914 RAFL14 Arabidopsis thaliana... 74 3e-011
gb|BP580293.1|BP580293 BP580293 RAFL14 Arabidopsis thaliana... 74 3e-011
gb|BP626844.1|BP626844 BP626844 RAFL17 Arabidopsis thaliana... 74 3e-011
gb|BP839766.1|BP839766 BP839766 RAFL19 Arabidopsis thaliana... 74 3e-011
gb|CC457557.1|CC457557 SALK_110754.36.80.x Arabidopsis thal... 72 1e-010
gb|AA712646.1|AA712646 31779 Lambda-PRL2 Arabidopsis thalia... 72 1e-010
gb|BP625448.1|BP625448 BP625448 RAFL17 Arabidopsis thaliana... 72 1e-010
gb|BP563818.1|BP563818 BP563818 RAFL14 Arabidopsis thaliana... 68 2e-009
gb|BP665880.1|BP665880 BP665880 RAFL21 Arabidopsis thaliana... 68 2e-009
gb|BP853310.1|BP853310 BP853310 RAFL21 Arabidopsis thaliana... 68 2e-009
gb|BP623824.1|BP623824 BP623824 RAFL17 Arabidopsis thaliana... 66 8e-009
gb|BP662464.1|BP662464 BP662464 RAFL21 Arabidopsis thaliana... 64 3e-008
gb|BP579913.1|BP579913 BP579913 RAFL14 Arabidopsis thaliana... 60 5e-007
gb|BP859294.1|BP859294 BP859294 RAFL21 Arabidopsis thaliana... 56 7e-006
gb|BP594647.1|BP594647 BP594647 RAFL15 Arabidopsis thaliana... 54 3e-005
gb|BP798665.1|BP798665 BP798665 RAFL14 Arabidopsis thaliana... 54 3e-005
gb|BP827211.1|BP827211 BP827211 RAFL19 Arabidopsis thaliana... 54 3e-005
gb|BP827764.1|BP827764 BP827764 RAFL19 Arabidopsis thaliana... 54 3e-005
gb|BT003047.1| Arabidopsis thaliana At3g06680 gene, complet... 54 3e-005
emb|BX824272.1|CNS0A7RM Arabidopsis thaliana Full-length cD... 54 3e-005
emb|BX826254.1|CNS0A7ON Arabidopsis thaliana Full-length cD... 54 3e-005
emb|AJ834128.1| Arabidopsis thaliana T-DNA flanking sequenc... 54 3e-005
emb|AJ837455.1| Arabidopsis thaliana T-DNA flanking sequenc... 54 3e-005
ref|NM_111548.2| Arabidopsis thaliana structural constituen... 54 3e-005
gb|BP801015.1|BP801015 BP801015 RAFL14 Arabidopsis thaliana... 48 0.002
gb|BP850807.1|BP850807 BP850807 RAFL21 Arabidopsis thaliana... 48 0.002
gb|AU226289.1|AU226289 AU226289 RAFL14 Arabidopsis thaliana... 46 0.007
gb|BP624094.1|BP624094 BP624094 RAFL17 Arabidopsis thaliana... 46 0.007
gb|BP628571.1|BP628571 BP628571 RAFL17 Arabidopsis thaliana... 46 0.007
gb|AY202670.1|AY202670 AY202670 Arabidopsis thaliana Landsb... 44 0.028
gb|BP648236.1|BP648236 BP648236 RAFL19 Arabidopsis thaliana... 40 0.44
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 40 0.44
dbj|AB074572.1| Arabidopsis thaliana AtPSK1 gene for phytos... 40 0.44
gb|AC027656.4|F21F23 Sequence of BAC F21F23 from Arabidopsi... 40 0.44
gb|AC027134.4|AC027134 Arabidopsis thaliana chromosome I BA... 40 0.44
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 40 0.44
>gb|BP607772.1|BP607772 BP607772 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-76-C13 3',
mRNA sequence
Length = 420
Score = 99.6 bits (50), Expect = 6e-019
Identities = 123/146 (84%), Gaps = 1/146 (0%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 352 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 293
Query: 147 catcaagaagcccaagcgccaccgccagacctccacca-aggggatggacccgaagtttc 205
||||||||||| | | | ||||| || ||| | |||| |||| |||||||| ||||| |
Sbjct: 292 aatcaagaagccaaggagacaccgtcacaccccaaccagagggaatggaccctaagttcc 233
Query: 206 tgaggaacttgaggtactcaaggaag 231
|||||||| ||||||| ||||||||
Sbjct: 232 tgaggaaccagaggtacgcaaggaag 207
>gb|AI996189.1|AI996189 701550514 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701550514, mRNA sequence
Length = 378
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 326 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 267
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 266 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 207
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 206 gaggaaccagaggtacgcaaggaag 182
>gb|AV787917.1|AV787917 AV787917 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-77-H24 3',
mRNA sequence
Length = 415
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 348 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 289
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 288 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 229
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 228 gaggaaccagaggtacgcaaggaag 204
>gb|AV789685.1|AV789685 AV789685 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-84-J04 3',
mRNA sequence
Length = 408
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 353 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 294
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 293 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 234
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 233 gaggaaccagaggtacgcaaggaag 209
>gb|AV790204.1|AV790204 AV790204 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-87-H13 3',
mRNA sequence
Length = 411
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 348 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 289
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 288 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 229
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 228 gaggaaccagaggtacgcaaggaag 204
>gb|BP567189.1|BP567189 BP567189 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-57-B03 3',
mRNA sequence
Length = 394
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 350 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 291
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 290 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 231
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 230 gaggaaccagaggtacgcaaggaag 206
>gb|BP570306.1|BP570306 BP570306 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-72-C11 3',
mRNA sequence
Length = 430
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 352 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 293
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 292 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 233
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 232 gaggaaccagaggtacgcaaggaag 208
>gb|BP573487.1|BP573487 BP573487 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-84-H11 3',
mRNA sequence
Length = 403
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 348 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 289
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 288 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 229
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 228 gaggaaccagaggtacgcaaggaag 204
>gb|BP573892.1|BP573892 BP573892 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-85-P17 3',
mRNA sequence
Length = 394
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 352 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 293
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 292 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 233
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 232 gaggaaccagaggtacgcaaggaag 208
>gb|BP584403.1|BP584403 BP584403 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-46-C14 3',
mRNA sequence
Length = 425
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 350 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 291
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 290 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 231
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 230 gaggaaccagaggtacgcaaggaag 206
>gb|BP594318.1|BP594318 BP594318 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-25-H03 3',
mRNA sequence
Length = 448
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 348 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 289
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 288 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 229
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 228 gaggaaccagaggtacgcaaggaag 204
>gb|BP627061.1|BP627061 BP627061 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-49-M01 3',
mRNA sequence
Length = 420
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 348 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 289
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 288 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 229
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 228 gaggaaccagaggtacgcaaggaag 204
>gb|BP651308.1|BP651308 BP651308 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-88-H09 3',
mRNA sequence
Length = 409
Score = 97.6 bits (49), Expect = 2e-018
Identities = 122/145 (84%), Gaps = 1/145 (0%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 347 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 288
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||| ||||| | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 287 aatcaagaag-ccaagagacaccgtcacaccccaaccagaggaatggaccctaagttcct 229
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 228 gaggaaccagaggtacgcaaggaag 204
>gb|BP670437.1|BP670437 BP670437 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-35-C04 3',
mRNA sequence
Length = 434
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 355 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 296
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 295 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 236
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 235 gaggaaccagaggtacccaaggaag 211
>gb|BP793485.1|BP793485 BP793485 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-56-H14 3',
mRNA sequence
Length = 410
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 349 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 290
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 289 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 230
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 229 gaggaaccagaggtacgcaaggaag 205
>gb|BP794770.1|BP794770 BP794770 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-61-P17 3',
mRNA sequence
Length = 409
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 348 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 289
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 288 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 229
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 228 gaggaaccagaggtacgcaaggaag 204
>gb|BP798064.1|BP798064 BP798064 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-05-N16 5',
mRNA sequence
Length = 389
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 75 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 134
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 135 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 194
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 195 gaggaaccagaggtacgcaaggaag 219
>gb|BP812426.1|BP812426 BP812426 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-F17 5',
mRNA sequence
Length = 403
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 73 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 132
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 133 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 192
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 193 gaggaaccagaggtacgcaaggaag 217
>gb|BP823891.1|BP823891 BP823891 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-07-N21 5',
mRNA sequence
Length = 394
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 72 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 131
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 132 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 191
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 192 gaggaaccagaggtacgcaaggaag 216
>gb|BP860269.1|BP860269 BP860269 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-43-J12 5',
mRNA sequence
Length = 378
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 73 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 132
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 133 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 192
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 193 gaggaaccagaggtacgcaaggaag 217
>gb|AY087083.1| Arabidopsis thaliana clone 315 mRNA, complete sequence
Length = 421
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 75 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 134
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 135 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 194
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 195 gaggaaccagaggtacgcaaggaag 219
>ref|NM_111550.2| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.1 mRNA, complete cds
Length = 427
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 76 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 135
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 136 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 195
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 196 gaggaaccagaggtacgcaaggaag 220
>ref|NM_001035573.1| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.2 mRNA, complete cds
Length = 405
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 55 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 114
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 115 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 174
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 175 gaggaaccagaggtacgcaaggaag 199
>ref|NM_001035574.1| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.3 mRNA, complete cds
Length = 400
Score = 97.6 bits (49), Expect = 2e-018
Identities = 121/145 (83%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 50 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 109
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 110 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 169
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 170 gaggaaccagaggtacgcaaggaag 194
>gb|T45129.1|T45129 8392 Lambda-PRL2 Arabidopsis thaliana cDNA clone 71G4T7, mRNA
sequence
Length = 499
Score = 89.7 bits (45), Expect = 5e-016
Identities = 121/145 (83%), Gaps = 1/145 (0%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 57 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagc-cacaagaacgg 115
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 116 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 175
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 176 gaggaaccagaggtacgcaaggaag 200
>gb|T46465.1|T46465 9728 Lambda-PRL2 Arabidopsis thaliana cDNA clone 131O18T7, mRNA
sequence
Length = 413
Score = 89.7 bits (45), Expect = 5e-016
Identities = 121/145 (83%), Gaps = 1/145 (0%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 53 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagc-cacaagaacgg 111
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 112 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 171
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 172 gaggaaccagaggtacgcaaggaag 196
>gb|BP566212.1|BP566212 BP566212 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-52-O20 3',
mRNA sequence
Length = 441
Score = 89.7 bits (45), Expect = 5e-016
Identities = 120/145 (82%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 352 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 293
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | |||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 292 aatcaagaagccaaggagacaccttcacaccccaaccagaggaatggaccctaagttcct 233
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 232 gaggaaccagaggtacgcaaggaag 208
>gb|BP578867.1|BP578867 BP578867 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-19-P18 3',
mRNA sequence
Length = 435
Score = 89.7 bits (45), Expect = 5e-016
Identities = 120/145 (82%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| || || || |||||||||||
Sbjct: 352 gatggccaagtcgaagaatcacacggcgcataaccattctgcgaaagctcacaagaacgg 293
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 292 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 233
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 232 gaggaaccagaggtacgcaaggaag 208
>gb|BP590939.1|BP590939 BP590939 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-12-L02 3',
mRNA sequence
Length = 385
Score = 89.7 bits (45), Expect = 5e-016
Identities = 120/145 (82%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 351 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 292
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||| ||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 291 aatcaaaaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 232
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 231 gaggaaccagaggtacgcaaggaag 207
>gb|BP624148.1|BP624148 BP624148 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-39-C01 3',
mRNA sequence
Length = 424
Score = 89.7 bits (45), Expect = 5e-016
Identities = 120/145 (82%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 352 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 293
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 292 aatcaagaagccaagtagacaccgtcacaccccaaccagaggaatggaccctaagttcct 233
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 232 gaggaaccagaggtacgcaaggaag 208
>gb|BP624538.1|BP624538 BP624538 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-40-J12 3',
mRNA sequence
Length = 428
Score = 89.7 bits (45), Expect = 5e-016
Identities = 120/145 (82%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||| ||||||||||||| ||| || || |||||||||||
Sbjct: 352 gatggccaagtcgaagaatcacgcggcgcataaccagtcggcgaaagcccacaagaacgg 293
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 292 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 233
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 232 gaggaaccagaggtacgcaaggaag 208
>gb|BP659569.1|BP659569 BP659569 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-39-P20 3',
mRNA sequence
Length = 402
Score = 89.7 bits (45), Expect = 5e-016
Identities = 120/145 (82%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 352 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 293
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 292 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 233
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||| ||||
Sbjct: 232 gaggaaccagaggtacgcaatgaag 208
>gb|BP801924.1|BP801924 BP801924 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-22-A01 5',
mRNA sequence
Length = 350
Score = 89.7 bits (45), Expect = 5e-016
Identities = 120/145 (82%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || || ||||||||
Sbjct: 29 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccaaaagaacgg 88
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 89 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 148
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 149 gaggaaccagaggtacgcaaggaag 173
>gb|BP850536.1|BP850536 BP850536 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-13-D20 5',
mRNA sequence
Length = 388
Score = 89.7 bits (45), Expect = 5e-016
Identities = 120/145 (82%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||| ||||||||| ||| || || |||||||||||
Sbjct: 76 gatggccaagtcgaagaatcacacggggcataaccagtcggggaaagcccacaagaacgg 135
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 136 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 195
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 196 gaggaaccagaggtacgcaaggaag 220
>gb|BP859109.1|BP859109 BP859109 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-39-I18 5',
mRNA sequence
Length = 394
Score = 89.7 bits (45), Expect = 5e-016
Identities = 120/145 (82%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||| ||||||||| ||| || || |||||||||||
Sbjct: 75 gatggccaagtcgaagaatcacacggtgcataaccagtcggcgaaagcccacaagaacgg 134
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 135 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 194
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 195 gaggaaccagaggtacgcaaggaag 219
>gb|BP861973.1|BP861973 BP861973 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-49-H18 5',
mRNA sequence
Length = 403
Score = 89.7 bits (45), Expect = 5e-016
Identities = 120/145 (82%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 56 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 115
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | | || || |||||||| ||||| ||
Sbjct: 116 aatcaagaagccaaggagacaccgtcacaccccaaacagaggaatggaccctaagttcct 175
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 176 gaggaaccagaggtacgcaaggaag 200
>gb|BP565017.1|BP565017 BP565017 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-10-H11 3',
mRNA sequence
Length = 428
Score = 87.7 bits (44), Expect = 2e-015
Identities = 113/136 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 352 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 293
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 292 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 233
Query: 207 gaggaacttgaggtac 222
||||||| |||||||
Sbjct: 232 gaggaaccagaggtac 217
>gb|BP585210.1|BP585210 BP585210 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-01-L10 3',
mRNA sequence
Length = 449
Score = 85.7 bits (43), Expect = 8e-015
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 349 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 290
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 289 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 230
Query: 207 gaggaac 213
|||||||
Sbjct: 229 gaggaac 223
>gb|BP589709.1|BP589709 BP589709 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-50-L17 3',
mRNA sequence
Length = 434
Score = 83.8 bits (42), Expect = 3e-014
Identities = 121/146 (82%), Gaps = 1/146 (0%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataacca-atcgttcaaggcgcacaagaacg 145
|||||||||||||||||| ||||||||||||||||| ||| || || ||||||||||
Sbjct: 357 gatggccaagtcgaagaatcacacggcgcataaccaggtcggcgaaagcccacaagaacg 298
Query: 146 gcatcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttc 205
| ||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| |
Sbjct: 297 gaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcc 238
Query: 206 tgaggaacttgaggtactcaaggaag 231
|||||||| ||||||| ||||||||
Sbjct: 237 tgaggaaccagaggtacgcaaggaag 212
>gb|AV782445.1|AV782445 AV782445 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-H14 3',
mRNA sequence
Length = 446
Score = 81.8 bits (41), Expect = 1e-013
Identities = 120/145 (82%), Gaps = 1/145 (0%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
||||||||||||||| || ||||||||||||||||| ||| || || |||||||||||
Sbjct: 351 gatggccaagtcgaa-aatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 293
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 292 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 233
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 232 gaggaaccagaggtacgcaaggaag 208
>gb|AV821876.1|AV821876 AV821876 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-H14 5',
mRNA sequence
Length = 465
Score = 81.8 bits (41), Expect = 1e-013
Identities = 120/145 (82%), Gaps = 1/145 (0%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
||||||||||||||| || ||||||||||||||||| ||| || || |||||||||||
Sbjct: 74 gatggccaagtcgaa-aatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 132
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 133 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 192
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 193 gaggaaccagaggtacgcaaggaag 217
>gb|AV544641.1|AV544641 AV544641 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ52f09F 3', mRNA sequence
Length = 299
Score = 81.8 bits (41), Expect = 1e-013
Identities = 119/145 (82%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||| ||| ||| || || ||||||| |||
Sbjct: 248 gatggccaagtcgaagaatcacacggcgcatatccagtcggcgaaagcccacaagatcgg 189
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 188 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 129
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 128 gaggaaccagaggtacgcaaggaag 104
>gb|BP662193.1|BP662193 BP662193 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-10-J24 3',
mRNA sequence
Length = 415
Score = 81.8 bits (41), Expect = 1e-013
Identities = 120/145 (82%), Gaps = 1/145 (0%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 351 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 292
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| ||| | || ||| ||||| ||||| ||
Sbjct: 291 aatcaagaagccaaggagacaccgtcacacc-ccaaccagaggaatgaccctaagttcct 233
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 232 gaggaaccagaggtacgcaaggaag 208
>gb|BP862005.1|BP862005 BP862005 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-49-J12 5',
mRNA sequence
Length = 405
Score = 81.8 bits (41), Expect = 1e-013
Identities = 120/145 (82%), Gaps = 1/145 (0%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 73 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 132
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || ||||| || ||||| ||
Sbjct: 133 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatgga-cctaagttcct 191
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 192 gaggaaccagaggtacgcaaggaag 216
>gb|BP863856.1|BP863856 BP863856 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-68-E20 5',
mRNA sequence
Length = 384
Score = 81.8 bits (41), Expect = 1e-013
Identities = 121/145 (83%), Gaps = 2/145 (1%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 76 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 135
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| ||| || || |||||||| ||| ||||
Sbjct: 136 aatcaagaagccaaggagacaccgtcacacc-ccaacagaggaatggaccctaag-ttct 193
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 194 gaggaaccagaggtacgcaaggaag 218
>gb|AF386978.1|AF386978 Arabidopsis thaliana ribosomal protein L29, putative; 3222-3503
(T8E24.8) mRNA, complete cds
Length = 422
Score = 81.8 bits (41), Expect = 1e-013
Identities = 120/145 (82%), Gaps = 1/145 (0%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
||||||||||||||| || ||||||||||||||||| ||| || || |||||||||||
Sbjct: 73 gatggccaagtcgaa-aatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 131
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 132 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 191
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| ||||||| ||||||||
Sbjct: 192 gaggaaccagaggtacgcaaggaag 216
>emb|BX822483.1|CNS0A7SG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB40ZB09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 397
Score = 81.8 bits (41), Expect = 1e-013
Identities = 119/145 (82%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || ||||||||||
Sbjct: 50 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcctacaagaacgg 109
Query: 147 catcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttct 206
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| ||
Sbjct: 110 aatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcct 169
Query: 207 gaggaacttgaggtactcaaggaag 231
||||||| |||||| ||||||||
Sbjct: 170 gaggaacaaaaggtacgcaaggaag 194
>gb|BP586350.1|BP586350 BP586350 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-06-A07 3',
mRNA sequence
Length = 413
Score = 79.8 bits (40), Expect = 5e-013
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 346 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 287
Query: 147 catcaagaagcc 158
|||||||||||
Sbjct: 286 aatcaagaagcc 275
>gb|BT002608.1| Arabidopsis thaliana ribosomal protein L29, putative (At3g06700)
mRNA, complete cds
Length = 280
Score = 79.8 bits (40), Expect = 5e-013
Identities = 119/144 (82%), Gaps = 1/144 (0%)
Strand = Plus / Plus
Query: 88 atggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacggc 147
|||||||||||||| || ||||||||||||||||| ||| || || |||||||||||
Sbjct: 10 atggccaagtcgaa-aatcacacggcgcataaccagtcggcgaaagcccacaagaacgga 68
Query: 148 atcaagaagcccaagcgccaccgccagacctccaccaaggggatggacccgaagtttctg 207
||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||| |||
Sbjct: 69 atcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcctg 128
Query: 208 aggaacttgaggtactcaaggaag 231
|||||| ||||||| ||||||||
Sbjct: 129 aggaaccagaggtacgcaaggaag 152
>gb|AC036106.6|AC036106 Arabidopsis thaliana chromosome 3 BAC T8E24 genomic sequence,
complete sequence
Length = 51646
Score = 79.8 bits (40), Expect = 5e-013
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 87 gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
|||||||||||||||||| ||||||||||||||||| ||| || || |||||||||||
Sbjct: 3221 gatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacgg 3280
Query: 147 catcaagaagcc 158
|||||||||||
Sbjct: 3281 aatcaagaagcc 3292
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 88 atggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacggc 147
||||| || |||||||| ||||||||||| || || || ||||||||| ||||||||
Sbjct: 6298 atggcgaaatcgaagaatcacacggcgcacaatcagtctgccaaggcgcataagaacgga 6357
Query: 148 atcaagaagcc 158
|||||||||||
Sbjct: 6358 atcaagaagcc 6368
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 298,328
Number of Sequences: 1013581
Number of extensions: 298328
Number of successful extensions: 22660
Number of sequences better than 0.5: 92
Number of HSP's better than 0.5 without gapping: 90
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 21998
Number of HSP's gapped (non-prelim): 637
length of query: 621
length of database: 908,940,872
effective HSP length: 20
effective length of query: 601
effective length of database: 888,669,252
effective search space: 534090220452
effective search space used: 534090220452
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)