BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131543.2.11
(514 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP607772.1|BP607772 BP607772 RAFL16 Arabidopsis thaliana... 113 3e-023
gb|AI996189.1|AI996189 701550514 A. thaliana, Columbia Col-... 111 1e-022
gb|AV787917.1|AV787917 AV787917 RAFL6 Arabidopsis thaliana ... 111 1e-022
gb|AV789685.1|AV789685 AV789685 RAFL6 Arabidopsis thaliana ... 111 1e-022
gb|AV790204.1|AV790204 AV790204 RAFL6 Arabidopsis thaliana ... 111 1e-022
gb|BP567189.1|BP567189 BP567189 RAFL14 Arabidopsis thaliana... 111 1e-022
gb|BP570306.1|BP570306 BP570306 RAFL14 Arabidopsis thaliana... 111 1e-022
gb|BP573487.1|BP573487 BP573487 RAFL14 Arabidopsis thaliana... 111 1e-022
gb|BP573892.1|BP573892 BP573892 RAFL14 Arabidopsis thaliana... 111 1e-022
gb|BP584403.1|BP584403 BP584403 RAFL14 Arabidopsis thaliana... 111 1e-022
gb|BP594318.1|BP594318 BP594318 RAFL15 Arabidopsis thaliana... 111 1e-022
gb|BP627061.1|BP627061 BP627061 RAFL17 Arabidopsis thaliana... 111 1e-022
gb|BP651308.1|BP651308 BP651308 RAFL19 Arabidopsis thaliana... 111 1e-022
gb|BP670437.1|BP670437 BP670437 RAFL21 Arabidopsis thaliana... 111 1e-022
gb|BP793485.1|BP793485 BP793485 RAFL7 Arabidopsis thaliana ... 111 1e-022
gb|BP794770.1|BP794770 BP794770 RAFL7 Arabidopsis thaliana ... 111 1e-022
gb|BP798064.1|BP798064 BP798064 RAFL14 Arabidopsis thaliana... 111 1e-022
gb|BP812426.1|BP812426 BP812426 RAFL19 Arabidopsis thaliana... 111 1e-022
gb|BP823891.1|BP823891 BP823891 RAFL19 Arabidopsis thaliana... 111 1e-022
gb|BP860269.1|BP860269 BP860269 RAFL21 Arabidopsis thaliana... 111 1e-022
gb|AY087083.1| Arabidopsis thaliana clone 315 mRNA, complet... 111 1e-022
ref|NM_111550.2| Arabidopsis thaliana structural constituen... 111 1e-022
ref|NM_001035573.1| Arabidopsis thaliana structural constit... 111 1e-022
gb|BP565017.1|BP565017 BP565017 RAFL14 Arabidopsis thaliana... 107 2e-021
gb|BP659569.1|BP659569 BP659569 RAFL19 Arabidopsis thaliana... 107 2e-021
ref|NM_001035574.1| Arabidopsis thaliana structural constit... 107 2e-021
gb|T45129.1|T45129 8392 Lambda-PRL2 Arabidopsis thaliana cD... 103 3e-020
gb|T46465.1|T46465 9728 Lambda-PRL2 Arabidopsis thaliana cD... 103 3e-020
gb|BP566212.1|BP566212 BP566212 RAFL14 Arabidopsis thaliana... 103 3e-020
gb|BP585210.1|BP585210 BP585210 RAFL15 Arabidopsis thaliana... 103 3e-020
gb|BP590939.1|BP590939 BP590939 RAFL15 Arabidopsis thaliana... 103 3e-020
gb|BP624148.1|BP624148 BP624148 RAFL17 Arabidopsis thaliana... 103 3e-020
gb|BP624538.1|BP624538 BP624538 RAFL17 Arabidopsis thaliana... 103 3e-020
gb|BP801924.1|BP801924 BP801924 RAFL14 Arabidopsis thaliana... 103 3e-020
gb|BP850536.1|BP850536 BP850536 RAFL21 Arabidopsis thaliana... 103 3e-020
gb|BP859109.1|BP859109 BP859109 RAFL21 Arabidopsis thaliana... 103 3e-020
gb|BP861973.1|BP861973 BP861973 RAFL21 Arabidopsis thaliana... 103 3e-020
gb|BP589709.1|BP589709 BP589709 RAFL15 Arabidopsis thaliana... 98 2e-018
gb|AV782445.1|AV782445 AV782445 RAFL4 Arabidopsis thaliana ... 96 7e-018
gb|AV821876.1|AV821876 AV821876 RAFL4 Arabidopsis thaliana ... 96 7e-018
gb|AV544641.1|AV544641 AV544641 Arabidopsis thaliana roots ... 96 7e-018
gb|BP578867.1|BP578867 BP578867 RAFL14 Arabidopsis thaliana... 96 7e-018
gb|BP662193.1|BP662193 BP662193 RAFL21 Arabidopsis thaliana... 96 7e-018
gb|BP862005.1|BP862005 BP862005 RAFL21 Arabidopsis thaliana... 96 7e-018
gb|AF386978.1|AF386978 Arabidopsis thaliana ribosomal prote... 96 7e-018
gb|BP669325.1|BP669325 BP669325 RAFL21 Arabidopsis thaliana... 94 3e-017
gb|BP625448.1|BP625448 BP625448 RAFL17 Arabidopsis thaliana... 92 1e-016
gb|BP570914.1|BP570914 BP570914 RAFL14 Arabidopsis thaliana... 88 2e-015
gb|BP586350.1|BP586350 BP586350 RAFL15 Arabidopsis thaliana... 88 2e-015
gb|BP626844.1|BP626844 BP626844 RAFL17 Arabidopsis thaliana... 88 2e-015
gb|BP863856.1|BP863856 BP863856 RAFL21 Arabidopsis thaliana... 88 2e-015
gb|BT002608.1| Arabidopsis thaliana ribosomal protein L29, ... 88 2e-015
emb|BX822483.1|CNS0A7SG Arabidopsis thaliana Full-length cD... 88 2e-015
gb|AA712646.1|AA712646 31779 Lambda-PRL2 Arabidopsis thalia... 86 7e-015
gb|BP623821.1|BP623821 BP623821 RAFL17 Arabidopsis thaliana... 86 7e-015
gb|AC036106.6|AC036106 Arabidopsis thaliana chromosome 3 BA... 86 7e-015
gb|AC023912.5|ATAC023912 Arabidopsis thaliana chromosome II... 86 7e-015
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 86 7e-015
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 86 7e-015
gb|BP798816.1|BP798816 BP798816 RAFL14 Arabidopsis thaliana... 84 3e-014
gb|BP580293.1|BP580293 BP580293 RAFL14 Arabidopsis thaliana... 82 1e-013
gb|BP665880.1|BP665880 BP665880 RAFL21 Arabidopsis thaliana... 82 1e-013
gb|BP853310.1|BP853310 BP853310 RAFL21 Arabidopsis thaliana... 82 1e-013
gb|BP563818.1|BP563818 BP563818 RAFL14 Arabidopsis thaliana... 80 4e-013
gb|BP839766.1|BP839766 BP839766 RAFL19 Arabidopsis thaliana... 80 4e-013
gb|CC457557.1|CC457557 SALK_110754.36.80.x Arabidopsis thal... 78 2e-012
gb|BP579913.1|BP579913 BP579913 RAFL14 Arabidopsis thaliana... 74 3e-011
gb|BP623824.1|BP623824 BP623824 RAFL17 Arabidopsis thaliana... 70 4e-010
gb|BP662464.1|BP662464 BP662464 RAFL21 Arabidopsis thaliana... 70 4e-010
gb|BP798665.1|BP798665 BP798665 RAFL14 Arabidopsis thaliana... 70 4e-010
gb|BP827211.1|BP827211 BP827211 RAFL19 Arabidopsis thaliana... 70 4e-010
gb|BP827764.1|BP827764 BP827764 RAFL19 Arabidopsis thaliana... 70 4e-010
gb|BT003047.1| Arabidopsis thaliana At3g06680 gene, complet... 70 4e-010
emb|BX824272.1|CNS0A7RM Arabidopsis thaliana Full-length cD... 70 4e-010
emb|BX826254.1|CNS0A7ON Arabidopsis thaliana Full-length cD... 70 4e-010
emb|AJ834128.1| Arabidopsis thaliana T-DNA flanking sequenc... 70 4e-010
emb|AJ837455.1| Arabidopsis thaliana T-DNA flanking sequenc... 70 4e-010
ref|NM_111548.2| Arabidopsis thaliana structural constituen... 70 4e-010
gb|AU226289.1|AU226289 AU226289 RAFL14 Arabidopsis thaliana... 62 1e-007
gb|BP624094.1|BP624094 BP624094 RAFL17 Arabidopsis thaliana... 62 1e-007
gb|BP628571.1|BP628571 BP628571 RAFL17 Arabidopsis thaliana... 62 1e-007
gb|BP859294.1|BP859294 BP859294 RAFL21 Arabidopsis thaliana... 62 1e-007
gb|AY202670.1|AY202670 AY202670 Arabidopsis thaliana Landsb... 58 2e-006
gb|BP850807.1|BP850807 BP850807 RAFL21 Arabidopsis thaliana... 58 2e-006
gb|BP594647.1|BP594647 BP594647 RAFL15 Arabidopsis thaliana... 56 6e-006
gb|BP648236.1|BP648236 BP648236 RAFL19 Arabidopsis thaliana... 54 2e-005
gb|BP662298.1|BP662298 BP662298 RAFL21 Arabidopsis thaliana... 54 2e-005
gb|BP801015.1|BP801015 BP801015 RAFL14 Arabidopsis thaliana... 50 4e-004
gb|BP813068.1|BP813068 BP813068 RAFL19 Arabidopsis thaliana... 48 0.001
gb|AU235562.1|AU235562 AU235562 RAFL14 Arabidopsis thaliana... 46 0.006
emb|AL138646.2|ATT8B10 Arabidopsis thaliana DNA chromosome ... 44 0.023
gb|BP649751.1|BP649751 BP649751 RAFL19 Arabidopsis thaliana... 40 0.36
>gb|BP607772.1|BP607772 BP607772 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-76-C13 3',
mRNA sequence
Length = 420
Score = 113 bits (57), Expect = 3e-023
Identities = 127/149 (85%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 355 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 296
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccacca-aggggatggaccccaagt 228
||| ||||||||||| | | | ||||| || ||| | |||| |||| |||||||| ||||
Sbjct: 295 cggaatcaagaagccaaggagacaccgtcacaccccaaccagagggaatggaccctaagt 236
Query: 229 tcctgaggaacctgaggtattcaaggaag 257
|||||||||||| |||||| ||||||||
Sbjct: 235 tcctgaggaaccagaggtacgcaaggaag 207
>gb|AI996189.1|AI996189 701550514 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701550514, mRNA sequence
Length = 378
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 329 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 270
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 269 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 210
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 209 cctgaggaaccagaggtacgcaaggaag 182
>gb|AV787917.1|AV787917 AV787917 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-77-H24 3',
mRNA sequence
Length = 415
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 351 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 292
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 291 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 232
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 231 cctgaggaaccagaggtacgcaaggaag 204
>gb|AV789685.1|AV789685 AV789685 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-84-J04 3',
mRNA sequence
Length = 408
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 356 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 297
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 296 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 237
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 236 cctgaggaaccagaggtacgcaaggaag 209
>gb|AV790204.1|AV790204 AV790204 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-87-H13 3',
mRNA sequence
Length = 411
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 351 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 292
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 291 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 232
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 231 cctgaggaaccagaggtacgcaaggaag 204
>gb|BP567189.1|BP567189 BP567189 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-57-B03 3',
mRNA sequence
Length = 394
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 353 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 294
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 293 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 234
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 233 cctgaggaaccagaggtacgcaaggaag 206
>gb|BP570306.1|BP570306 BP570306 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-72-C11 3',
mRNA sequence
Length = 430
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 355 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 296
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 295 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 236
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 235 cctgaggaaccagaggtacgcaaggaag 208
>gb|BP573487.1|BP573487 BP573487 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-84-H11 3',
mRNA sequence
Length = 403
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 351 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 292
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 291 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 232
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 231 cctgaggaaccagaggtacgcaaggaag 204
>gb|BP573892.1|BP573892 BP573892 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-85-P17 3',
mRNA sequence
Length = 394
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 355 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 296
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 295 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 236
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 235 cctgaggaaccagaggtacgcaaggaag 208
>gb|BP584403.1|BP584403 BP584403 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-46-C14 3',
mRNA sequence
Length = 425
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 353 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 294
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 293 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 234
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 233 cctgaggaaccagaggtacgcaaggaag 206
>gb|BP594318.1|BP594318 BP594318 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-25-H03 3',
mRNA sequence
Length = 448
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 351 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 292
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 291 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 232
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 231 cctgaggaaccagaggtacgcaaggaag 204
>gb|BP627061.1|BP627061 BP627061 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-49-M01 3',
mRNA sequence
Length = 420
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 351 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 292
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 291 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 232
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 231 cctgaggaaccagaggtacgcaaggaag 204
>gb|BP651308.1|BP651308 BP651308 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-88-H09 3',
mRNA sequence
Length = 409
Score = 111 bits (56), Expect = 1e-022
Identities = 126/148 (85%), Gaps = 1/148 (0%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 350 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 291
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||| ||||| | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 290 cggaatcaagaag-ccaagagacaccgtcacaccccaaccagaggaatggaccctaagtt 232
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 231 cctgaggaaccagaggtacgcaaggaag 204
>gb|BP670437.1|BP670437 BP670437 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-35-C04 3',
mRNA sequence
Length = 434
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 358 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 299
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 298 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 239
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 238 cctgaggaaccagaggtacccaaggaag 211
>gb|BP793485.1|BP793485 BP793485 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-56-H14 3',
mRNA sequence
Length = 410
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 352 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 293
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 292 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 233
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 232 cctgaggaaccagaggtacgcaaggaag 205
>gb|BP794770.1|BP794770 BP794770 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-61-P17 3',
mRNA sequence
Length = 409
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 351 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 292
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 291 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 232
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 231 cctgaggaaccagaggtacgcaaggaag 204
>gb|BP798064.1|BP798064 BP798064 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-05-N16 5',
mRNA sequence
Length = 389
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 72 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 131
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 132 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 191
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 192 cctgaggaaccagaggtacgcaaggaag 219
>gb|BP812426.1|BP812426 BP812426 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-F17 5',
mRNA sequence
Length = 403
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 70 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 129
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 130 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 189
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 190 cctgaggaaccagaggtacgcaaggaag 217
>gb|BP823891.1|BP823891 BP823891 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-07-N21 5',
mRNA sequence
Length = 394
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 69 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 128
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 129 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 188
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 189 cctgaggaaccagaggtacgcaaggaag 216
>gb|BP860269.1|BP860269 BP860269 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-43-J12 5',
mRNA sequence
Length = 378
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 70 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 129
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 130 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 189
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 190 cctgaggaaccagaggtacgcaaggaag 217
>gb|AY087083.1| Arabidopsis thaliana clone 315 mRNA, complete sequence
Length = 421
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 72 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 131
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 132 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 191
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 192 cctgaggaaccagaggtacgcaaggaag 219
>ref|NM_111550.2| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.1 mRNA, complete cds
Length = 427
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 73 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 132
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 133 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 192
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 193 cctgaggaaccagaggtacgcaaggaag 220
>ref|NM_001035573.1| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.2 mRNA, complete cds
Length = 405
Score = 111 bits (56), Expect = 1e-022
Identities = 125/148 (84%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 52 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 111
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 112 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 171
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 172 cctgaggaaccagaggtacgcaaggaag 199
>gb|BP565017.1|BP565017 BP565017 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-10-H11 3',
mRNA sequence
Length = 428
Score = 107 bits (54), Expect = 2e-021
Identities = 117/138 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 355 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 296
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 295 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 236
Query: 230 cctgaggaacctgaggta 247
||||||||||| ||||||
Sbjct: 235 cctgaggaaccagaggta 218
>gb|BP659569.1|BP659569 BP659569 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-39-P20 3',
mRNA sequence
Length = 402
Score = 107 bits (54), Expect = 2e-021
Identities = 117/138 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 355 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 296
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 295 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 236
Query: 230 cctgaggaacctgaggta 247
||||||||||| ||||||
Sbjct: 235 cctgaggaaccagaggta 218
>ref|NM_001035574.1| Arabidopsis thaliana structural constituent of ribosome AT3G06700
transcript variant AT3G06700.3 mRNA, complete cds
Length = 400
Score = 107 bits (54), Expect = 2e-021
Identities = 123/146 (84%)
Strand = Plus / Plus
Query: 112 agatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaacg 171
||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||||
Sbjct: 49 agatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaacg 108
Query: 172 gcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagttcc 231
| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||||
Sbjct: 109 gaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagttcc 168
Query: 232 tgaggaacctgaggtattcaaggaag 257
||||||||| |||||| ||||||||
Sbjct: 169 tgaggaaccagaggtacgcaaggaag 194
>gb|T45129.1|T45129 8392 Lambda-PRL2 Arabidopsis thaliana cDNA clone 71G4T7, mRNA
sequence
Length = 499
Score = 103 bits (52), Expect = 3e-020
Identities = 125/148 (84%), Gaps = 1/148 (0%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 54 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagc-cacaagaa 112
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 113 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 172
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 173 cctgaggaaccagaggtacgcaaggaag 200
>gb|T46465.1|T46465 9728 Lambda-PRL2 Arabidopsis thaliana cDNA clone 131O18T7, mRNA
sequence
Length = 413
Score = 103 bits (52), Expect = 3e-020
Identities = 125/148 (84%), Gaps = 1/148 (0%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 50 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagc-cacaagaa 108
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 109 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 168
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 169 cctgaggaaccagaggtacgcaaggaag 196
>gb|BP566212.1|BP566212 BP566212 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-52-O20 3',
mRNA sequence
Length = 441
Score = 103 bits (52), Expect = 3e-020
Identities = 124/148 (83%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 355 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 296
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | |||| || ||| | |||| || |||||||| |||||
Sbjct: 295 cggaatcaagaagccaaggagacaccttcacaccccaaccagaggaatggaccctaagtt 236
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 235 cctgaggaaccagaggtacgcaaggaag 208
>gb|BP585210.1|BP585210 BP585210 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-01-L10 3',
mRNA sequence
Length = 449
Score = 103 bits (52), Expect = 3e-020
Identities = 115/136 (84%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 352 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 293
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 292 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 233
Query: 230 cctgaggaacctgagg 245
||||||||||| ||||
Sbjct: 232 cctgaggaaccagagg 217
>gb|BP590939.1|BP590939 BP590939 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-12-L02 3',
mRNA sequence
Length = 385
Score = 103 bits (52), Expect = 3e-020
Identities = 124/148 (83%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 354 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 295
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||| ||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 294 cggaatcaaaaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 235
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 234 cctgaggaaccagaggtacgcaaggaag 207
>gb|BP624148.1|BP624148 BP624148 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-39-C01 3',
mRNA sequence
Length = 424
Score = 103 bits (52), Expect = 3e-020
Identities = 124/148 (83%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 355 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 296
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 295 cggaatcaagaagccaagtagacaccgtcacaccccaaccagaggaatggaccctaagtt 236
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 235 cctgaggaaccagaggtacgcaaggaag 208
>gb|BP624538.1|BP624538 BP624538 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-40-J12 3',
mRNA sequence
Length = 428
Score = 103 bits (52), Expect = 3e-020
Identities = 124/148 (83%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||| ||||||| ||||||||| || || ||||||||
Sbjct: 355 agagatggccaagtcgaagaatcacgcggcgcataaccagtcggcgaaagcccacaagaa 296
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 295 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 236
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 235 cctgaggaaccagaggtacgcaaggaag 208
>gb|BP801924.1|BP801924 BP801924 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-22-A01 5',
mRNA sequence
Length = 350
Score = 103 bits (52), Expect = 3e-020
Identities = 124/148 (83%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || || |||||
Sbjct: 26 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccaaaagaa 85
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 86 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 145
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 146 cctgaggaaccagaggtacgcaaggaag 173
>gb|BP850536.1|BP850536 BP850536 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-13-D20 5',
mRNA sequence
Length = 388
Score = 103 bits (52), Expect = 3e-020
Identities = 124/148 (83%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||| ||| ||||||||| || || ||||||||
Sbjct: 73 agagatggccaagtcgaagaatcacacggggcataaccagtcggggaaagcccacaagaa 132
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 133 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 192
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 193 cctgaggaaccagaggtacgcaaggaag 220
>gb|BP859109.1|BP859109 BP859109 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-39-I18 5',
mRNA sequence
Length = 394
Score = 103 bits (52), Expect = 3e-020
Identities = 124/148 (83%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||| ||| ||||||||| || || ||||||||
Sbjct: 72 agagatggccaagtcgaagaatcacacggtgcataaccagtcggcgaaagcccacaagaa 131
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 132 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 191
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 192 cctgaggaaccagaggtacgcaaggaag 219
>gb|BP861973.1|BP861973 BP861973 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-49-H18 5',
mRNA sequence
Length = 403
Score = 103 bits (52), Expect = 3e-020
Identities = 124/148 (83%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 53 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 112
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | | || || |||||||| |||||
Sbjct: 113 cggaatcaagaagccaaggagacaccgtcacaccccaaacagaggaatggaccctaagtt 172
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 173 cctgaggaaccagaggtacgcaaggaag 200
>gb|BP589709.1|BP589709 BP589709 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-50-L17 3',
mRNA sequence
Length = 434
Score = 97.6 bits (49), Expect = 2e-018
Identities = 125/149 (83%), Gaps = 1/149 (0%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaacca-gtcgtacaaggcgcacaaga 168
||||||||||||||||||||| ||||||||||| ||||| |||| || || |||||||
Sbjct: 360 agagatggccaagtcgaagaatcacacggcgcataaccaggtcggcgaaagcccacaaga 301
Query: 169 acggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagt 228
|||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| ||||
Sbjct: 300 acggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagt 241
Query: 229 tcctgaggaacctgaggtattcaaggaag 257
|||||||||||| |||||| ||||||||
Sbjct: 240 tcctgaggaaccagaggtacgcaaggaag 212
>gb|AV782445.1|AV782445 AV782445 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-H14 3',
mRNA sequence
Length = 446
Score = 95.6 bits (48), Expect = 7e-018
Identities = 124/148 (83%), Gaps = 1/148 (0%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
|||||||||||||||||| || ||||||||||| ||||||||| || || ||||||||
Sbjct: 354 agagatggccaagtcgaa-aatcacacggcgcataaccagtcggcgaaagcccacaagaa 296
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 295 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 236
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 235 cctgaggaaccagaggtacgcaaggaag 208
>gb|AV821876.1|AV821876 AV821876 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-H14 5',
mRNA sequence
Length = 465
Score = 95.6 bits (48), Expect = 7e-018
Identities = 124/148 (83%), Gaps = 1/148 (0%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
|||||||||||||||||| || ||||||||||| ||||||||| || || ||||||||
Sbjct: 71 agagatggccaagtcgaa-aatcacacggcgcataaccagtcggcgaaagcccacaagaa 129
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 130 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 189
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 190 cctgaggaaccagaggtacgcaaggaag 217
>gb|AV544641.1|AV544641 AV544641 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ52f09F 3', mRNA sequence
Length = 299
Score = 95.6 bits (48), Expect = 7e-018
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| | ||||||| || || |||||||
Sbjct: 251 agagatggccaagtcgaagaatcacacggcgcatatccagtcggcgaaagcccacaagat 192
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 191 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 132
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 131 cctgaggaaccagaggtacgcaaggaag 104
>gb|BP578867.1|BP578867 BP578867 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-19-P18 3',
mRNA sequence
Length = 435
Score = 95.6 bits (48), Expect = 7e-018
Identities = 123/148 (83%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||| || || || ||||||||
Sbjct: 355 agagatggccaagtcgaagaatcacacggcgcataaccattctgcgaaagctcacaagaa 296
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 295 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 236
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 235 cctgaggaaccagaggtacgcaaggaag 208
>gb|BP662193.1|BP662193 BP662193 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-10-J24 3',
mRNA sequence
Length = 415
Score = 95.6 bits (48), Expect = 7e-018
Identities = 124/148 (83%), Gaps = 1/148 (0%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 354 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 295
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| ||| | || ||| ||||| |||||
Sbjct: 294 cggaatcaagaagccaaggagacaccgtcacacc-ccaaccagaggaatgaccctaagtt 236
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 235 cctgaggaaccagaggtacgcaaggaag 208
>gb|BP862005.1|BP862005 BP862005 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-49-J12 5',
mRNA sequence
Length = 405
Score = 95.6 bits (48), Expect = 7e-018
Identities = 124/148 (83%), Gaps = 1/148 (0%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 70 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 129
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || ||||| || |||||
Sbjct: 130 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatgga-cctaagtt 188
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 189 cctgaggaaccagaggtacgcaaggaag 216
>gb|AF386978.1|AF386978 Arabidopsis thaliana ribosomal protein L29, putative; 3222-3503
(T8E24.8) mRNA, complete cds
Length = 422
Score = 95.6 bits (48), Expect = 7e-018
Identities = 124/148 (83%), Gaps = 1/148 (0%)
Strand = Plus / Plus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
|||||||||||||||||| || ||||||||||| ||||||||| || || ||||||||
Sbjct: 70 agagatggccaagtcgaa-aatcacacggcgcataaccagtcggcgaaagcccacaagaa 128
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 129 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 188
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 189 cctgaggaaccagaggtacgcaaggaag 216
>gb|BP669325.1|BP669325 BP669325 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-30-I01 3',
mRNA sequence
Length = 420
Score = 93.7 bits (47), Expect = 3e-017
Identities = 110/131 (83%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
|||||||||||||||||| || ||||||||||| ||||||||| || || ||||||||
Sbjct: 360 agagatggccaagtcgaataatcacacggcgcataaccagtcggcgaaagcccacaagaa 301
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| | |||| || |||||||| |||||
Sbjct: 300 cggaatcaagaagccaaggagacaccgtcacaccccaaccagaggaatggaccctaagtt 241
Query: 230 cctgaggaacc 240
|||||||||||
Sbjct: 240 cctgaggaacc 230
>gb|BP625448.1|BP625448 BP625448 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-43-N16 3',
mRNA sequence
Length = 422
Score = 91.7 bits (46), Expect = 1e-016
Identities = 117/138 (84%), Gaps = 2/138 (1%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 347 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 288
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| ||| | || | |||||||| |||||
Sbjct: 287 cgg-atcaagaagccaaggagacaccgtcacacc-ccaaccagagaatggaccctaagtt 230
Query: 230 cctgaggaacctgaggta 247
||||||||||| ||||||
Sbjct: 229 cctgaggaaccagaggta 212
>gb|BP570914.1|BP570914 BP570914 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-74-F01 3',
mRNA sequence
Length = 431
Score = 87.7 bits (44), Expect = 2e-015
Identities = 122/148 (82%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||| || || ||| ||||||| ||||||||| || || ||||||||
Sbjct: 351 agagatggccaagtccaacaatcacccggcgcataaccagtcggcgaaagcccacaagaa 292
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| |||||| || |||||||| |||||
Sbjct: 291 cggaatcaagaagccaaggagacaccgtcacacccccaccagaggaatggaccctaagtt 232
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||| | |||||| ||||||||
Sbjct: 231 cctgaggaatcagaggtacgcaaggaag 204
>gb|BP586350.1|BP586350 BP586350 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-06-A07 3',
mRNA sequence
Length = 413
Score = 87.7 bits (44), Expect = 2e-015
Identities = 124/148 (83%), Gaps = 2/148 (1%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 349 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 290
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
||| ||||||||||| | | | ||||| || ||| ||| | || | |||||||| |||||
Sbjct: 289 cggaatcaagaagccaaggagacaccgtcacacc-ccaaccagagaatggaccctaagtt 231
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||| ||||| |||||| ||||||||
Sbjct: 230 cctga-gaaccagaggtacgcaaggaag 204
>gb|BP626844.1|BP626844 BP626844 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-49-A15 3',
mRNA sequence
Length = 438
Score = 87.7 bits (44), Expect = 2e-015
Identities = 124/148 (83%), Gaps = 2/148 (1%)
Strand = Plus / Minus
Query: 110 agagatggccaagtcgaagaaccacacggcgcacaaccagtcgtacaaggcgcacaagaa 169
||||||||||||||||||||| ||||||||||| ||||||||| || || ||||||||
Sbjct: 356 agagatggccaagtcgaagaatcacacggcgcataaccagtcggcgaaagcccacaagaa 297
Query: 170 cggcatcaagaagcccaagcgccaccggcagacctccaccaaggggatggaccccaagtt 229
| | ||||||||||| | | | ||||| || ||| ||| | || | |||||||| |||||
Sbjct: 296 c-gaatcaagaagccaaggagacaccgtcacacc-ccaaccagagaatggaccctaagtt 239
Query: 230 cctgaggaacctgaggtattcaaggaag 257
||||||||||| |||||| ||||||||
Sbjct: 238 cctgaggaaccagaggtacgcaaggaag 211
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 264,168
Number of Sequences: 1013581
Number of extensions: 264168
Number of successful extensions: 20112
Number of sequences better than 0.5: 92
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19572
Number of HSP's gapped (non-prelim): 472
length of query: 514
length of database: 908,940,872
effective HSP length: 20
effective length of query: 494
effective length of database: 888,669,252
effective search space: 439002610488
effective search space used: 439002610488
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)