BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.458
(708 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB256917.1|CB256917 54-E012741-027-007-K13-T7R MPIZ-ADIS... 68 2e-009
emb|AL091849.1|CNS00V57 Arabidopsis thaliana genome survey ... 60 5e-007
gb|T21431.1|T21431 3439 Lambda-PRL2 Arabidopsis thaliana cD... 60 5e-007
gb|AI996110.1|AI996110 701550051 A. thaliana, Columbia Col-... 60 5e-007
gb|AV783172.1|AV783172 AV783172 RAFL5 Arabidopsis thaliana ... 60 5e-007
gb|AV796523.1|AV796523 AV796523 RAFL9 Arabidopsis thaliana ... 60 5e-007
gb|AV822413.1|AV822413 AV822413 RAFL5 Arabidopsis thaliana ... 60 5e-007
gb|CK118335.1|CK118335 217e13.p1 AtM1 Arabidopsis thaliana ... 60 5e-007
gb|CK119013.1|CK119013 215a05.p1 AtM1 Arabidopsis thaliana ... 60 5e-007
gb|BP572838.1|BP572838 BP572838 RAFL14 Arabidopsis thaliana... 60 5e-007
gb|BP659252.1|BP659252 BP659252 RAFL19 Arabidopsis thaliana... 60 5e-007
gb|BP855118.1|BP855118 BP855118 RAFL21 Arabidopsis thaliana... 60 5e-007
gb|AF370320.1| Arabidopsis thaliana putative ribosomal prot... 60 5e-007
gb|AY063108.1| Arabidopsis thaliana putative ribosomal prot... 60 5e-007
gb|AY085956.1| Arabidopsis thaliana clone 20141 mRNA, compl... 60 5e-007
gb|AC020579.5|AC020579 Arabidopsis thaliana chromosome 1 BA... 60 5e-007
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 60 5e-007
ref|NM_106087.2| Arabidopsis thaliana structural constituen... 60 5e-007
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 60 5e-007
gb|AQ959463.1|AQ959463 LEREK46TF LERE Arabidopsis thaliana ... 54 3e-005
gb|AQ959465.1|AQ959465 LEREK48TR LERE Arabidopsis thaliana ... 54 3e-005
gb|AU239944.1|AU239944 AU239944 RAFL21 Arabidopsis thaliana... 54 3e-005
gb|BP796935.1|BP796935 BP796935 RAFL14 Arabidopsis thaliana... 54 3e-005
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 54 3e-005
gb|BT004714.1| Arabidopsis thaliana At1g07070 gene, complet... 54 3e-005
gb|AY086795.1| Arabidopsis thaliana clone 2778 mRNA, comple... 54 3e-005
gb|AC067971.5|F10K1 Sequence of BAC F10K1 from Arabidopsis ... 54 3e-005
dbj|AK119060.1| Arabidopsis thaliana At1g07070 mRNA for unk... 54 3e-005
ref|NM_100581.2| Arabidopsis thaliana structural constituen... 54 3e-005
gb|BP647379.1|BP647379 BP647379 RAFL19 Arabidopsis thaliana... 46 0.008
gb|BP801431.1|BP801431 BP801431 RAFL14 Arabidopsis thaliana... 46 0.008
gb|BP848377.1|BP848377 BP848377 RAFL21 Arabidopsis thaliana... 46 0.008
gb|BP570770.1|BP570770 BP570770 RAFL14 Arabidopsis thaliana... 44 0.032
gb|BP572031.1|BP572031 BP572031 RAFL14 Arabidopsis thaliana... 44 0.032
>gb|CB256917.1|CB256917 54-E012741-027-007-K13-T7R MPIZ-ADIS-027 Arabidopsis thaliana cDNA
clone MPIZp772K137Q 5-PRIME, mRNA sequence
Length = 535
Score = 67.9 bits (34), Expect = 2e-009
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||||| |||||||||||| ||||
Sbjct: 177 ggatggcttacatctacaaggctaagacaaagaagaacggcagccactaccgctgtatct 236
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 237 ggggaaaggt 246
>emb|AL091849.1|CNS00V57 Arabidopsis thaliana genome survey sequence SP6 end of BAC T8M1 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 469
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 336 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 395
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 396 ggggaaaggt 405
>gb|T21431.1|T21431 3439 Lambda-PRL2 Arabidopsis thaliana cDNA clone 99I23T7, mRNA
sequence
Length = 432
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 155 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 214
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 215 ggggaaaggt 224
>gb|AI996110.1|AI996110 701550051 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701550051, mRNA sequence
Length = 421
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 314 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 255
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 254 ggggaaaggt 245
>gb|AV783172.1|AV783172 AV783172 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-07-C17 3',
mRNA sequence
Length = 510
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 321 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 262
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 261 ggggaaaggt 252
>gb|AV796523.1|AV796523 AV796523 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-08-H04 3',
mRNA sequence
Length = 424
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 342 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 283
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 282 ggggaaaggt 273
>gb|AV822413.1|AV822413 AV822413 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-07-C17 5',
mRNA sequence
Length = 548
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 190 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 249
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 250 ggggaaaggt 259
>gb|CK118335.1|CK118335 217e13.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011E13217
5-PRIME, mRNA sequence
Length = 390
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 172 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 231
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 232 ggggaaaggt 241
>gb|CK119013.1|CK119013 215a05.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011A05215
5-PRIME, mRNA sequence
Length = 517
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 172 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 231
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 232 ggggaaaggt 241
>gb|BP572838.1|BP572838 BP572838 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-81-K17 3',
mRNA sequence
Length = 445
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 363 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 304
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 303 ggggaaaggt 294
>gb|BP659252.1|BP659252 BP659252 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-38-K09 3',
mRNA sequence
Length = 381
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 341 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 282
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 281 ggggaaaggt 272
>gb|BP855118.1|BP855118 BP855118 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-25-J10 5',
mRNA sequence
Length = 376
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 171 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 230
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 231 ggggaaaggt 240
>gb|AF370320.1| Arabidopsis thaliana putative ribosomal protein (At1g74270) mRNA,
complete cds
Length = 526
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 189 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 248
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 249 ggggaaaggt 258
>gb|AY063108.1| Arabidopsis thaliana putative ribosomal protein (At1g74270) mRNA,
complete cds
Length = 370
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 158 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 217
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 218 ggggaaaggt 227
>gb|AY085956.1| Arabidopsis thaliana clone 20141 mRNA, complete sequence
Length = 518
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 178 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 237
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 238 ggggaaaggt 247
>gb|AC020579.5|AC020579 Arabidopsis thaliana chromosome 1 BAC F1O17 genomic sequence, complete
sequence
Length = 50821
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 24265 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 24324
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 24325 ggggaaaggt 24334
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 12170009 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 12169950
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 12169949 ggggaaaggt 12169940
>ref|NM_106087.2| Arabidopsis thaliana structural constituent of ribosome AT1G74270
mRNA, complete cds
Length = 529
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 189 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 248
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 249 ggggaaaggt 258
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 60.0 bits (30), Expect = 5e-007
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 27932351 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgctgtatct 27932292
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 27932291 ggggaaaggt 27932282
Score = 54.0 bits (27), Expect = 3e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| ||||||||||| ||||||||||||| | ||| | |||||||| ||||| |
Sbjct: 2169429 ggatggcttacatctacaaagccaagaccaagaagaacggtagtcactaccgatgcattt 2169488
Query: 314 ggggcaa 320
|||||||
Sbjct: 2169489 ggggcaa 2169495
>gb|AQ959463.1|AQ959463 LEREK46TF LERE Arabidopsis thaliana genomic clone LEREK46, DNA
sequence
Length = 485
Score = 54.0 bits (27), Expect = 3e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| ||||||||||| ||||||||||||| | ||| | |||||||| ||||| |
Sbjct: 79 ggatggcttacatctacaaagccaagaccaagaagaacggtagtcactaccgatgcattt 138
Query: 314 ggggcaa 320
|||||||
Sbjct: 139 ggggcaa 145
>gb|AQ959465.1|AQ959465 LEREK48TR LERE Arabidopsis thaliana genomic clone LEREK48, DNA
sequence
Length = 572
Score = 54.0 bits (27), Expect = 3e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| ||||||||||| ||||||||||||| | ||| | |||||||| ||||| |
Sbjct: 406 ggatggcttacatctacaaagccaagaccaagaagaacggtagtcactaccgatgcattt 347
Query: 314 ggggcaa 320
|||||||
Sbjct: 346 ggggcaa 340
>gb|AU239944.1|AU239944 AU239944 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-40-K06 5',
mRNA sequence
Length = 543
Score = 54.0 bits (27), Expect = 3e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| ||||||||||| ||||||||||||| | ||| | |||||||| ||||| |
Sbjct: 213 ggatggcttacatctacaaagccaagaccaagaagaacggtagtcactaccgatgcattt 272
Query: 314 ggggcaa 320
|||||||
Sbjct: 273 ggggcaa 279
>gb|BP796935.1|BP796935 BP796935 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-01-H04 5',
mRNA sequence
Length = 397
Score = 54.0 bits (27), Expect = 3e-005
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggcc-aagaccaagagcagcggcacccactaccgctgcatc 312
||||||| ||||||||||||||| ||||| |||| | ||| | |||||||||||| |||
Sbjct: 182 ggatggcttacatctacaaggcctaagacaaagaagaacggtagccactaccgctgtatc 241
Query: 313 tggggcaaggt 323
||||| |||||
Sbjct: 242 tggggaaaggt 252
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 54.0 bits (27), Expect = 3e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| ||||||||||| ||||||||||||| | ||| | |||||||| ||||| |
Sbjct: 2169276 ggatggcttacatctacaaagccaagaccaagaagaacggtagtcactaccgatgcattt 2169335
Query: 314 ggggcaa 320
|||||||
Sbjct: 2169336 ggggcaa 2169342
>gb|BT004714.1| Arabidopsis thaliana At1g07070 gene, complete cds
Length = 339
Score = 54.0 bits (27), Expect = 3e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| ||||||||||| ||||||||||||| | ||| | |||||||| ||||| |
Sbjct: 158 ggatggcttacatctacaaagccaagaccaagaagaacggtagtcactaccgatgcattt 217
Query: 314 ggggcaa 320
|||||||
Sbjct: 218 ggggcaa 224
>gb|AY086795.1| Arabidopsis thaliana clone 2778 mRNA, complete sequence
Length = 556
Score = 54.0 bits (27), Expect = 3e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| ||||||||||| ||||||||||||| | ||| | |||||||| ||||| |
Sbjct: 246 ggatggcttacatctacaaagccaagaccaagaagaacggtagtcactaccgatgcattt 305
Query: 314 ggggcaa 320
|||||||
Sbjct: 306 ggggcaa 312
>gb|AC067971.5|F10K1 Sequence of BAC F10K1 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 111464
Score = 54.0 bits (27), Expect = 3e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| ||||||||||| ||||||||||||| | ||| | |||||||| ||||| |
Sbjct: 72130 ggatggcttacatctacaaagccaagaccaagaagaacggtagtcactaccgatgcattt 72071
Query: 314 ggggcaa 320
|||||||
Sbjct: 72070 ggggcaa 72064
>dbj|AK119060.1| Arabidopsis thaliana At1g07070 mRNA for unknown protein, complete
cds, clone: RAFL21-40-K06
Length = 543
Score = 54.0 bits (27), Expect = 3e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| ||||||||||| ||||||||||||| | ||| | |||||||| ||||| |
Sbjct: 213 ggatggcttacatctacaaagccaagaccaagaagaacggtagtcactaccgatgcattt 272
Query: 314 ggggcaa 320
|||||||
Sbjct: 273 ggggcaa 279
>ref|NM_100581.2| Arabidopsis thaliana structural constituent of ribosome AT1G07070
mRNA, complete cds
Length = 575
Score = 54.0 bits (27), Expect = 3e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| ||||||||||| ||||||||||||| | ||| | |||||||| ||||| |
Sbjct: 246 ggatggcttacatctacaaagccaagaccaagaagaacggtagtcactaccgatgcattt 305
Query: 314 ggggcaa 320
|||||||
Sbjct: 306 ggggcaa 312
>gb|BP647379.1|BP647379 BP647379 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-75-E21 3',
mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 0.008
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||||||| ||||| |||| | ||| | |||||||| ||| ||||
Sbjct: 342 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactacccctgtatct 283
Query: 314 ggg 316
|||
Sbjct: 282 ggg 280
>gb|BP801431.1|BP801431 BP801431 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-19-N24 5',
mRNA sequence
Length = 370
Score = 46.1 bits (23), Expect = 0.008
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggcc-aagaccaagagcagcggcacccactaccgctgcatc 312
||||||| ||||||||||||||| |||| |||| | ||| | |||||||||||| |||
Sbjct: 182 ggatggcttacatctacaaggcctaagaaaaagaagaacggtagccactaccgctgtatc 241
Query: 313 tggggcaaggt 323
||||| |||||
Sbjct: 242 tggggaaaggt 252
>gb|BP848377.1|BP848377 BP848377 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-05-C20 5',
mRNA sequence
Length = 388
Score = 46.1 bits (23), Expect = 0.008
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccg-ctgcatc 312
||||||| |||||||||||||| ||||| |||| | ||| | ||||||||| ||| |||
Sbjct: 189 ggatggcttacatctacaaggctaagacaaagaagaacggtagccactaccgcctgtatc 248
Query: 313 tggggcaaggt 323
||||| |||||
Sbjct: 249 tggggaaaggt 259
>gb|BP570770.1|BP570770 BP570770 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-73-M12 3',
mRNA sequence
Length = 409
Score = 44.1 bits (22), Expect = 0.032
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||| ||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 363 ggatggcttacatctaca-ggctaagacaaagaagaacggtagccactaccgctgtatct 305
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 304 ggggaaaggt 295
>gb|BP572031.1|BP572031 BP572031 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-78-H19 3',
mRNA sequence
Length = 431
Score = 44.1 bits (22), Expect = 0.032
Identities = 59/70 (84%), Gaps = 1/70 (1%)
Strand = Plus / Minus
Query: 254 ggatggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatct 313
||||||| |||||||||| ||| ||||| |||| | ||| | |||||||||||| ||||
Sbjct: 363 ggatggcttacatctaca-ggctaagacaaagaagaacggtagccactaccgctgtatct 305
Query: 314 ggggcaaggt 323
|||| |||||
Sbjct: 304 ggggaaaggt 295
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 283,709
Number of Sequences: 1013581
Number of extensions: 283709
Number of successful extensions: 20440
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19963
Number of HSP's gapped (non-prelim): 479
length of query: 708
length of database: 908,940,872
effective HSP length: 20
effective length of query: 688
effective length of database: 888,669,252
effective search space: 611404445376
effective search space used: 611404445376
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)