BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.249
(684 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA042635.1|AA042635 24867 CD4-13 Arabidopsis thaliana cD... 62 1e-007
gb|BE528163.1|BE528163 M70D01STM Arabidopsis developing see... 62 1e-007
gb|AU235381.1|AU235381 AU235381 RAFL14 Arabidopsis thaliana... 62 1e-007
gb|AY128405.1| Arabidopsis thaliana putative cytochrome b5 ... 62 1e-007
gb|BT000085.1| Arabidopsis thaliana putative cytochrome b5 ... 62 1e-007
emb|AX506505.1| Sequence 1200 from Patent WO0216655 62 1e-007
ref|NM_128831.2| Arabidopsis thaliana B5 #4 AT2G32720 (B5 #... 62 1e-007
emb|BX821782.1|CNS0A99H Arabidopsis thaliana Full-length cD... 56 8e-006
gb|AA042329.1|AA042329 24666 CD4-13 Arabidopsis thaliana cD... 52 1e-004
gb|H37504.1|H37504 15633 Lambda-PRL2 Arabidopsis thaliana c... 52 1e-004
gb|N97190.1|N97190 22369 Lambda-PRL2 Arabidopsis thaliana c... 52 1e-004
gb|AI994177.1|AI994177 701500026 A. thaliana, Ohio State cl... 52 1e-004
gb|BE038203.1|BE038203 AA10C09 AA Arabidopsis thaliana cDNA... 52 1e-004
gb|AV782086.1|AV782086 AV782086 RAFL4 Arabidopsis thaliana ... 52 1e-004
gb|AV821583.1|AV821583 AV821583 RAFL4 Arabidopsis thaliana ... 52 1e-004
gb|CB261338.1|CB261338 07-E9573-012-004-N02-T7R MPIZ-ADIS-0... 52 1e-004
gb|CB264717.1|CB264717 44-E015024-035-004-H12-T7R MPIZ-ADIS... 52 1e-004
gb|AV533433.1|AV533433 AV533433 Arabidopsis thaliana flower... 52 1e-004
gb|AV533557.1|AV533557 AV533557 Arabidopsis thaliana flower... 52 1e-004
gb|AV553489.1|AV553489 AV553489 Arabidopsis thaliana roots ... 52 1e-004
gb|BP802283.1|BP802283 BP802283 RAFL14 Arabidopsis thaliana... 52 1e-004
gb|BP812343.1|BP812343 BP812343 RAFL19 Arabidopsis thaliana... 52 1e-004
gb|BP832754.1|BP832754 BP832754 RAFL19 Arabidopsis thaliana... 52 1e-004
gb|BP862245.1|BP862245 BP862245 RAFL21 Arabidopsis thaliana... 52 1e-004
gb|AF370256.1| Arabidopsis thaliana putative cytochrome b5 ... 52 1e-004
gb|AY063073.1| Arabidopsis thaliana putative cytochrome b5 ... 52 1e-004
gb|AY086738.1| Arabidopsis thaliana clone 27167 mRNA, compl... 52 1e-004
emb|BX841663.1|CNS09YKX Arabidopsis thaliana Full-length cD... 52 1e-004
dbj|AB007802.1| Arabidopsis thaliana mRNA for cytochrome b5... 52 1e-004
ref|NM_124258.2| Arabidopsis thaliana ATB5-B AT5G48810 (ATB... 52 1e-004
gb|AC003974.3| Arabidopsis thaliana chromosome 2 clone F24L... 50 5e-004
emb|BX829982.1|CNS0A1B1 Arabidopsis thaliana Full-length cD... 50 5e-004
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 50 5e-004
gb|AA389799.1|AA389799 OS133 NaCl-treated Arabidopsis subtr... 48 0.002
gb|T44153.1|T44153 7416 Lambda-PRL2 Arabidopsis thaliana cD... 48 0.002
emb|AL950473.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.12
gb|H76469.1|H76469 18174 Lambda-PRL2 Arabidopsis thaliana c... 42 0.12
gb|N65322.1|N65322 20362 Lambda-PRL2 Arabidopsis thaliana c... 42 0.12
gb|AV785501.1|AV785501 AV785501 RAFL6 Arabidopsis thaliana ... 42 0.12
gb|CD534506.1|CD534506 39K14 Arabidopsis Leaf Senescence Li... 42 0.12
gb|AV532919.1|AV532919 AV532919 Arabidopsis thaliana flower... 42 0.12
gb|AV556249.1|AV556249 AV556249 Arabidopsis thaliana green ... 42 0.12
gb|BP593695.1|BP593695 BP593695 RAFL15 Arabidopsis thaliana... 42 0.12
gb|BP620349.1|BP620349 BP620349 RAFL16 Arabidopsis thaliana... 42 0.12
gb|BP644741.1|BP644741 BP644741 RAFL19 Arabidopsis thaliana... 42 0.12
gb|BP650322.1|BP650322 BP650322 RAFL19 Arabidopsis thaliana... 42 0.12
dbj|AB012242.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.12
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 42 0.12
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.12
gb|AF089710.1|AF089710 Arabidopsis thaliana disease resista... 40 0.49
gb|AQ957298.1|AQ957298 LERAP01TR LERA Arabidopsis thaliana ... 38 1.9
gb|AV786570.1|AV786570 AV786570 RAFL6 Arabidopsis thaliana ... 38 1.9
gb|BX839789.1|BX839789 BX839789 Arabidopsis thaliana Adult ... 38 1.9
gb|BX841273.1|BX841273 BX841273 Arabidopsis thaliana Flower... 38 1.9
gb|CK119612.1|CK119612 211g13.p1 AtM1 Arabidopsis thaliana ... 38 1.9
gb|AY054695.1| Arabidopsis thaliana Unknown protein (At1g60... 38 1.9
gb|AY081476.1| Arabidopsis thaliana unknown protein (At1g60... 38 1.9
gb|AC004473.1|T13D8 Arabidopsis thaliana chromosome 1 BAC T... 38 1.9
emb|BX833456.1|CNS0A1VO Arabidopsis thaliana Full-length cD... 38 1.9
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 38 1.9
ref|NM_104713.3| Arabidopsis thaliana catalytic/ iron ion b... 38 1.9
ref|NM_124257.2| Arabidopsis thaliana protein binding / sig... 38 1.9
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 38 1.9
emb|AL091004.1|CNS00UHQ Arabidopsis thaliana genome survey ... 36 7.6
gb|BH847980.1|BH847980 SALK_067316.53.00.x Arabidopsis thal... 36 7.6
gb|CL469596.1|CL469596 SAIL_1307_D11.v1 SAIL Collection Ara... 36 7.6
gb|CL512447.1|CL512447 SAIL_860_E12.v1 SAIL Collection Arab... 36 7.6
emb|AL950474.1| Arabidopsis thaliana T-DNA flanking sequenc... 36 7.6
gb|R84063.1|R84063 16022 Lambda-PRL2 Arabidopsis thaliana c... 36 7.6
gb|BP802555.1|BP802555 BP802555 RAFL14 Arabidopsis thaliana... 36 7.6
>gb|AA042635.1|AA042635 24867 CD4-13 Arabidopsis thaliana cDNA clone E12A9T7, mRNA sequence
Length = 613
Score = 61.9 bits (31), Expect = 1e-007
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 391 gctgtgccccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaac 450
|||||| ||||| || || |||||||| || |||||||| | || ||||||| |||||
Sbjct: 194 gctgtgacccacgtcctcaaaatcatccgttgcatccttacctgttgaagacaagagaac 135
Query: 451 atcatcgcctccagggtgatcctccagaaacttggtcacattgtacacctt 501
||| || || || || || || || ||||||||||||||||||||||||||
Sbjct: 134 atcgtccccacctggatggtcttcaagaaacttggtcacattgtacacctt 84
>gb|BE528163.1|BE528163 M70D01STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600037202R1 5', mRNA sequence
Length = 279
Score = 61.9 bits (31), Expect = 1e-007
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 391 gctgtgccccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaac 450
|||||| ||||| || || |||||||| || |||||||| | || ||||||| |||||
Sbjct: 237 gctgtgacccacgtcctcaaaatcatccgttgcatccttacctgttgaagacaagagaac 178
Query: 451 atcatcgcctccagggtgatcctccagaaacttggtcacattgtacacctt 501
||| || || || || || || || ||||||||||||||||||||||||||
Sbjct: 177 atcgtccccacctggatggtcttcaagaaacttggtcacattgtacacctt 127
>gb|AU235381.1|AU235381 AU235381 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-07-C08 5',
mRNA sequence
Length = 645
Score = 61.9 bits (31), Expect = 1e-007
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 391 gctgtgccccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaac 450
|||||| ||||| || || |||||||| || |||||||| | || ||||||| |||||
Sbjct: 224 gctgtgacccacgtcctcaaaatcatccgttgcatccttacctgttgaagacaagagaac 165
Query: 451 atcatcgcctccagggtgatcctccagaaacttggtcacattgtacacctt 501
||| || || || || || || || ||||||||||||||||||||||||||
Sbjct: 164 atcgtccccacctggatggtcttcaagaaacttggtcacattgtacacctt 114
>gb|AY128405.1| Arabidopsis thaliana putative cytochrome b5 (At2g32720) mRNA,
complete cds
Length = 588
Score = 61.9 bits (31), Expect = 1e-007
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 391 gctgtgccccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaac 450
|||||| ||||| || || |||||||| || |||||||| | || ||||||| |||||
Sbjct: 229 gctgtgacccacgtcctcaaaatcatccgttgcatccttacctgttgaagacaagagaac 170
Query: 451 atcatcgcctccagggtgatcctccagaaacttggtcacattgtacacctt 501
||| || || || || || || || ||||||||||||||||||||||||||
Sbjct: 169 atcgtccccacctggatggtcttcaagaaacttggtcacattgtacacctt 119
>gb|BT000085.1| Arabidopsis thaliana putative cytochrome b5 (At2g32720) mRNA,
complete cds
Length = 532
Score = 61.9 bits (31), Expect = 1e-007
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 391 gctgtgccccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaac 450
|||||| ||||| || || |||||||| || |||||||| | || ||||||| |||||
Sbjct: 195 gctgtgacccacgtcctcaaaatcatccgttgcatccttacctgttgaagacaagagaac 136
Query: 451 atcatcgcctccagggtgatcctccagaaacttggtcacattgtacacctt 501
||| || || || || || || || ||||||||||||||||||||||||||
Sbjct: 135 atcgtccccacctggatggtcttcaagaaacttggtcacattgtacacctt 85
>emb|AX506505.1| Sequence 1200 from Patent WO0216655
Length = 405
Score = 61.9 bits (31), Expect = 1e-007
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 391 gctgtgccccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaac 450
|||||| ||||| || || |||||||| || |||||||| | || ||||||| |||||
Sbjct: 195 gctgtgacccacgtcctcaaaatcatccgttgcatccttacctgttgaagacaagagaac 136
Query: 451 atcatcgcctccagggtgatcctccagaaacttggtcacattgtacacctt 501
||| || || || || || || || ||||||||||||||||||||||||||
Sbjct: 135 atcgtccccacctggatggtcttcaagaaacttggtcacattgtacacctt 85
>ref|NM_128831.2| Arabidopsis thaliana B5 #4 AT2G32720 (B5 #4) mRNA, complete cds
Length = 650
Score = 61.9 bits (31), Expect = 1e-007
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 391 gctgtgccccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaac 450
|||||| ||||| || || |||||||| || |||||||| | || ||||||| |||||
Sbjct: 237 gctgtgacccacgtcctcaaaatcatccgttgcatccttacctgttgaagacaagagaac 178
Query: 451 atcatcgcctccagggtgatcctccagaaacttggtcacattgtacacctt 501
||| || || || || || || || ||||||||||||||||||||||||||
Sbjct: 177 atcgtccccacctggatggtcttcaagaaacttggtcacattgtacacctt 127
>emb|BX821782.1|CNS0A99H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL73ZD01 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 595
Score = 56.0 bits (28), Expect = 8e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 410 aaatcatcggtagcatccttggcagtggaagacagcagaacatcatcgcctccagggtga 469
|||||||| || |||||||| | || ||||||| |||||||| || || || || ||
Sbjct: 149 aaatcatccgttgcatccttacctgttgaagacaagagaacatcgtccccacctggatgg 90
Query: 470 tcctccagaaacttggtcacattgtacacctt 501
|| || ||||||||||||||||||||||||||
Sbjct: 89 tcttcaagaaacttggtcacattgtacacctt 58
>gb|AA042329.1|AA042329 24666 CD4-13 Arabidopsis thaliana cDNA clone E6E11T7, mRNA sequence
Length = 513
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 196 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 137
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 136 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 79
>gb|H37504.1|H37504 15633 Lambda-PRL2 Arabidopsis thaliana cDNA clone 182H10T7, mRNA
sequence
Length = 568
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 284 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 225
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 224 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 167
>gb|N97190.1|N97190 22369 Lambda-PRL2 Arabidopsis thaliana cDNA clone 246C18T7, mRNA
sequence
Length = 454
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 265 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 206
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 205 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 148
>gb|AI994177.1|AI994177 701500026 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701500026, mRNA sequence
Length = 563
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 238 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 179
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 178 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 121
>gb|BE038203.1|BE038203 AA10C09 AA Arabidopsis thaliana cDNA 5' similar to cytochrome b5,
mRNA sequence
Length = 621
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 235 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 176
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 175 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 118
>gb|AV782086.1|AV782086 AV782086 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-13-N15 3',
mRNA sequence
Length = 587
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 413 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 472
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 473 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 530
>gb|AV821583.1|AV821583 AV821583 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-13-N15 5',
mRNA sequence
Length = 679
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 275 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 216
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 215 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 158
>gb|CB261338.1|CB261338 07-E9573-012-004-N02-T7R MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769N024Q 5-PRIME, mRNA sequence
Length = 586
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 202 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 143
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 142 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 85
>gb|CB264717.1|CB264717 44-E015024-035-004-H12-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000H124Q 5-PRIME, mRNA sequence
Length = 631
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 249 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 190
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 189 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 132
>gb|AV533433.1|AV533433 AV533433 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB061e03F 3', mRNA sequence
Length = 591
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 368 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 427
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 428 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 485
>gb|AV533557.1|AV533557 AV533557 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB063g03F 3', mRNA sequence
Length = 488
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 350 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 409
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 410 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 467
>gb|AV553489.1|AV553489 AV553489 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ63g07R 5', mRNA sequence
Length = 531
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 243 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 184
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 183 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 126
>gb|BP802283.1|BP802283 BP802283 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-23-L07 5',
mRNA sequence
Length = 365
Score = 52.0 bits (26), Expect = 1e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 476 agaaacttggtcacattgtacacctt 501
||||||||||||||||||||||||||
Sbjct: 182 agaaacttggtcacattgtacacctt 157
>gb|BP812343.1|BP812343 BP812343 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-B21 5',
mRNA sequence
Length = 400
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 293 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 234
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 233 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 176
>gb|BP832754.1|BP832754 BP832754 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-93-K16 5',
mRNA sequence
Length = 396
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 293 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 234
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 233 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 176
>gb|BP862245.1|BP862245 BP862245 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-62-E24 5',
mRNA sequence
Length = 391
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 347 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 288
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 287 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 230
>gb|AF370256.1| Arabidopsis thaliana putative cytochrome b5 protein (At5g48810)
mRNA, complete cds
Length = 702
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 274 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 215
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 214 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 157
>gb|AY063073.1| Arabidopsis thaliana putative cytochrome b5 protein (At5g48810)
mRNA, complete cds
Length = 454
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 188 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 129
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 128 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 71
>gb|AY086738.1| Arabidopsis thaliana clone 27167 mRNA, complete sequence
Length = 706
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 294 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 235
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 234 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 177
>emb|BX841663.1|CNS09YKX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS59ZH11 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 620
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 255 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 196
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 195 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 138
>dbj|AB007802.1| Arabidopsis thaliana mRNA for cytochrome b5, complete cds
Length = 631
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 215 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 156
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 155 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 98
>ref|NM_124258.2| Arabidopsis thaliana ATB5-B AT5G48810 (ATB5-B) mRNA, complete cds
Length = 1119
Score = 52.0 bits (26), Expect = 1e-004
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| |||||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 294 cccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 235
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 234 ccaccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 177
>gb|AC003974.3| Arabidopsis thaliana chromosome 2 clone F24L7 map TEn5, complete
sequence
Length = 92612
Score = 50.1 bits (25), Expect = 5e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 476 agaaacttggtcacattgtacacct 500
|||||||||||||||||||||||||
Sbjct: 61771 agaaacttggtcacattgtacacct 61747
>emb|BX829982.1|CNS0A1B1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB51ZC06 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 622
Score = 50.1 bits (25), Expect = 5e-004
Identities = 94/117 (80%)
Strand = Plus / Minus
Query: 399 ccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcgc 458
||||||| |||||||||||||| ||||| || | || |||| || | ||| ||||| |
Sbjct: 241 ccacatcctcgaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatcac 182
Query: 459 ctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 181 caccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 125
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 50.1 bits (25), Expect = 5e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 476 agaaacttggtcacattgtacacct 500
|||||||||||||||||||||||||
Sbjct: 13884467 agaaacttggtcacattgtacacct 13884491
>gb|AA389799.1|AA389799 OS133 NaCl-treated Arabidopsis subtraction library Arabidopsis
thaliana cDNA 5' similar to Cytochrome b5, mRNA sequence
Length = 404
Score = 48.1 bits (24), Expect = 0.002
Identities = 92/115 (80%)
Strand = Plus / Minus
Query: 401 acatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcgcct 460
||||||| |||||||||||| ||||| || | || |||| || | ||| ||||| ||
Sbjct: 254 acatcttngaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatcacca 195
Query: 461 ccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 194 ccaggatgatcatccaagaactttgtcacatcataaaccttgccgtcgatgacga 140
>gb|T44153.1|T44153 7416 Lambda-PRL2 Arabidopsis thaliana cDNA clone 122O19T7, mRNA
sequence
Length = 429
Score = 48.1 bits (24), Expect = 0.002
Identities = 94/118 (79%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| | |||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 256 cccacatcctngaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 197
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||||||||
Sbjct: 196 ccaccaggatgatcatccaagaactttgtcacatnataaaccttgccgtcgatgacga 139
>emb|AL950473.1| Arabidopsis thaliana T-DNA flanking sequence GK-328H06-016034,
genomic survey sequence
Length = 188
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatc 426
|||||||| |||||||||||||| |||||
Sbjct: 138 cccacatcctcgaaatcatcggtcgcatc 110
>gb|H76469.1|H76469 18174 Lambda-PRL2 Arabidopsis thaliana cDNA clone 196B3M4, mRNA
sequence
Length = 427
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatc 426
|||||||| |||||||||||||| |||||
Sbjct: 248 cccacatcctcgaaatcatcggtcgcatc 220
>gb|N65322.1|N65322 20362 Lambda-PRL2 Arabidopsis thaliana cDNA clone 226F18T7, mRNA
sequence
Length = 458
Score = 42.1 bits (21), Expect = 0.12
Identities = 93/118 (78%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| | |||||||||||| ||||| || | || |||| || | ||| |||||
Sbjct: 238 cccacatcctngaaatcatcggtcgcatctttccctgtagaagtcaagataacctcatca 179
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||| ||||
Sbjct: 178 ccaccaggatgatcatccaagaactttgtcacatnataaaccttgccgtcgatnacga 121
>gb|AV785501.1|AV785501 AV785501 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-16-O18 3',
mRNA sequence
Length = 442
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatc 426
|||||||| |||||||||||||| |||||
Sbjct: 363 cccacatcctcgaaatcatcggtcgcatc 391
>gb|CD534506.1|CD534506 39K14 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 455
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatc 426
|||||||| |||||||||||||| |||||
Sbjct: 360 cccacatcctcgaaatcatcggtcgcatc 388
>gb|AV532919.1|AV532919 AV532919 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB052d05F 3', mRNA sequence
Length = 428
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatc 426
|||||||| |||||||||||||| |||||
Sbjct: 353 cccacatcctcgaaatcatcggtcgcatc 381
>gb|AV556249.1|AV556249 AV556249 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ038b07F 3', mRNA sequence
Length = 521
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatc 426
|||||||| |||||||||||||| |||||
Sbjct: 417 cccacatcctcgaaatcatcggtcgcatc 445
>gb|BP593695.1|BP593695 BP593695 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-23-C18 3',
mRNA sequence
Length = 460
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatc 426
|||||||| |||||||||||||| |||||
Sbjct: 368 cccacatcctcgaaatcatcggtcgcatc 396
>gb|BP620349.1|BP620349 BP620349 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-36-O20 3',
mRNA sequence
Length = 441
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatc 426
|||||||| |||||||||||||| |||||
Sbjct: 367 cccacatcctcgaaatcatcggtcgcatc 395
>gb|BP644741.1|BP644741 BP644741 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-66-H16 3',
mRNA sequence
Length = 420
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatc 426
|||||||| |||||||||||||| |||||
Sbjct: 380 cccacatcctcgaaatcatcggtcgcatc 408
>gb|BP650322.1|BP650322 BP650322 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-84-A15 3',
mRNA sequence
Length = 420
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatc 426
|||||||| |||||||||||||| |||||
Sbjct: 387 cccacatcctcgaaatcatcggtcgcatc 415
>dbj|AB012242.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24G6
Length = 78973
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatc 426
|||||||| |||||||||||||| |||||
Sbjct: 44521 cccacatcctcgaaatcatcggtcgcatc 44549
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatc 426
|||||||| |||||||||||||| |||||
Sbjct: 17859611 cccacatcctcgaaatcatcggtcgcatc 17859639
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggtagcatc 426
|||||||| |||||||||||||| |||||
Sbjct: 19806710 cccacatcctcgaaatcatcggtcgcatc 19806738
>gb|AF089710.1|AF089710 Arabidopsis thaliana disease resistance protein RPP8 (RPP8) gene,
complete cds
Length = 15000
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 410 aaatcatcggtagcatccttggca 433
|||||||| |||||||||||||||
Sbjct: 6676 aaatcatcagtagcatccttggca 6653
>gb|AQ957298.1|AQ957298 LERAP01TR LERA Arabidopsis thaliana genomic clone LERAP01, DNA
sequence
Length = 264
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggt 420
|||||||| ||||||||||||||
Sbjct: 240 cccacatcctcgaaatcatcggt 262
>gb|AV786570.1|AV786570 AV786570 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-72-B04 3',
mRNA sequence
Length = 409
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggt 420
|||||||| ||||||||||||||
Sbjct: 386 cccacatcctcgaaatcatcggt 408
>gb|BX839789.1|BX839789 BX839789 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS59ZB08 5PRIM, mRNA
sequence
Length = 919
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 147 ttatgtttgcagcgttgatgaca 169
||||||||||||| |||||||||
Sbjct: 813 ttatgtttgcagctttgatgaca 791
>gb|BX841273.1|BX841273 BX841273 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB66ZD06 5PRIM, mRNA sequence
Length = 1161
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 147 ttatgtttgcagcgttgatgaca 169
||||||||||||| |||||||||
Sbjct: 889 ttatgtttgcagctttgatgaca 867
>gb|CK119612.1|CK119612 211g13.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011G13211
5-PRIME, mRNA sequence
Length = 485
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 147 ttatgtttgcagcgttgatgaca 169
||||||||||||| |||||||||
Sbjct: 321 ttatgtttgcagctttgatgaca 299
>gb|AY054695.1| Arabidopsis thaliana Unknown protein (At1g60230; T13D8.12) mRNA,
complete cds
Length = 1525
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 147 ttatgtttgcagcgttgatgaca 169
||||||||||||| |||||||||
Sbjct: 822 ttatgtttgcagctttgatgaca 800
>gb|AY081476.1| Arabidopsis thaliana unknown protein (At1g60230) mRNA, complete cds
Length = 1428
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 147 ttatgtttgcagcgttgatgaca 169
||||||||||||| |||||||||
Sbjct: 814 ttatgtttgcagctttgatgaca 792
>gb|AC004473.1|T13D8 Arabidopsis thaliana chromosome 1 BAC T13D8, complete sequence
Length = 116177
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 147 ttatgtttgcagcgttgatgaca 169
||||||||||||| |||||||||
Sbjct: 52941 ttatgtttgcagctttgatgaca 52963
>emb|BX833456.1|CNS0A1VO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL56ZH10 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 888
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 77 aagactcaagtttcagaat 95
|||||||||||||||||||
Sbjct: 888 aagactcaagtttcagaat 870
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 147 ttatgtttgcagcgttgatgaca 169
||||||||||||| |||||||||
Sbjct: 6454290 ttatgtttgcagctttgatgaca 6454312
>ref|NM_104713.3| Arabidopsis thaliana catalytic/ iron ion binding AT1G60230 mRNA,
complete cds
Length = 1594
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 147 ttatgtttgcagcgttgatgaca 169
||||||||||||| |||||||||
Sbjct: 892 ttatgtttgcagctttgatgaca 870
>ref|NM_124257.2| Arabidopsis thaliana protein binding / signal transducer AT5G48800
mRNA, complete cds
Length = 2466
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 398 cccacatcttcgaaatcatcggt 420
|||||||| ||||||||||||||
Sbjct: 2443 cccacatcctcgaaatcatcggt 2465
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 147 ttatgtttgcagcgttgatgaca 169
||||||||||||| |||||||||
Sbjct: 22216639 ttatgtttgcagctttgatgaca 22216661
>emb|AL091004.1|CNS00UHQ Arabidopsis thaliana genome survey sequence T7 end of BAC T7A7 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 600
Score = 36.2 bits (18), Expect = 7.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 265 gaactcctgggtcttgtc 282
||||||||||||||||||
Sbjct: 453 gaactcctgggtcttgtc 470
>gb|BH847980.1|BH847980 SALK_067316.53.00.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_067316.53.00.x,
DNA sequence
Length = 416
Score = 36.2 bits (18), Expect = 7.6
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 76 aaagactcaagtttcagaatta 97
||||||||||| ||||||||||
Sbjct: 212 aaagactcaagcttcagaatta 233
>gb|CL469596.1|CL469596 SAIL_1307_D11.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_1307_D11.v1, DNA sequence
Length = 987
Score = 36.2 bits (18), Expect = 7.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 615 ggaggcggaggcgaggac 632
||||||||||||||||||
Sbjct: 788 ggaggcggaggcgaggac 805
>gb|CL512447.1|CL512447 SAIL_860_E12.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_860_E12.v1, DNA sequence
Length = 1157
Score = 36.2 bits (18), Expect = 7.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 612 ggaggaggcggaggcgag 629
||||||||||||||||||
Sbjct: 750 ggaggaggcggaggcgag 733
>emb|AL950474.1| Arabidopsis thaliana T-DNA flanking sequence GK-328H06-016043,
genomic survey sequence
Length = 177
Score = 36.2 bits (18), Expect = 7.6
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 399 ccacatcttcgaaatcatcggt 420
||||||| ||||||||||||||
Sbjct: 148 ccacatcctcgaaatcatcggt 127
>gb|R84063.1|R84063 16022 Lambda-PRL2 Arabidopsis thaliana cDNA clone 133G18T7, mRNA
sequence
Length = 367
Score = 36.2 bits (18), Expect = 7.6
Identities = 92/118 (77%)
Strand = Plus / Minus
Query: 398 cccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaacatcatcg 457
|||||||| | |||||||||||| || || || | || |||| || | ||| |||||
Sbjct: 265 cccacatcctngaaatcatcggtcgcntctttccctgtagaagtcaagataacctcatca 206
Query: 458 cctccagggtgatcctccagaaacttggtcacattgtacaccttgccgccgatgacga 515
|| ||||| ||||| |||| ||||| ||||||| || ||||||||| |||| ||||
Sbjct: 205 ccaccaggatgatcatccaagaactttgtcacatnataaaccttgccgtcgatnacga 148
>gb|BP802555.1|BP802555 BP802555 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-25-F14 5',
mRNA sequence
Length = 371
Score = 36.2 bits (18), Expect = 7.6
Identities = 69/86 (80%)
Strand = Plus / Minus
Query: 391 gctgtgccccacatcttcgaaatcatcggtagcatccttggcagtggaagacagcagaac 450
|||||| ||||| ||||| ||||||| |||||||| || | || || |||| || ||
Sbjct: 261 gctgtgacccacgtcttcaaaatcatttgtagcatctttccctgttgaggacaacaagac 202
Query: 451 atcatcgcctccagggtgatcctcca 476
|||||||||||||| ||||| ||||
Sbjct: 201 ttcatcgcctccaggatgatcatcca 176
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 282,211
Number of Sequences: 1013581
Number of extensions: 282211
Number of successful extensions: 21566
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 20931
Number of HSP's gapped (non-prelim): 639
length of query: 684
length of database: 908,940,872
effective HSP length: 20
effective length of query: 664
effective length of database: 888,669,252
effective search space: 590076383328
effective search space used: 590076383328
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)