BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 129373.2.1
(1297 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP799562.1|BP799562 BP799562 RAFL14 Arabidopsis thaliana... 56 2e-005
gb|BP822015.1|BP822015 BP822015 RAFL19 Arabidopsis thaliana... 56 2e-005
gb|Z24526.1|Z24526 ATTS968 Ra147.1 Arabidopsis thaliana cDN... 50 0.001
gb|T45874.1|T45874 9137 Lambda-PRL2 Arabidopsis thaliana cD... 50 0.001
gb|BE523968.1|BE523968 M44A9STM Arabidopsis developing seed... 50 0.001
gb|BE525763.1|BE525763 M63O18STM Arabidopsis developing see... 50 0.001
gb|BE844690.1|BE844690 AD01A07T7 AD A. thaliana (Col-0 gl1)... 50 0.001
gb|AV826579.1|AV826579 AV826579 RAFL8 Arabidopsis thaliana ... 50 0.001
gb|AV829608.1|AV829608 AV829608 RAFL9 Arabidopsis thaliana ... 50 0.001
gb|AV831406.1|AV831406 AV831406 RAFL9 Arabidopsis thaliana ... 50 0.001
gb|BU634928.1|BU634928 002G09 Infected Arabidopsis Leaf Ara... 50 0.001
gb|BU636759.1|BU636759 011C09 Infected Arabidopsis Leaf Ara... 50 0.001
gb|CB264150.1|CB264150 87-E014994-035-003-M22-T7R MPIZ-ADIS... 50 0.001
gb|AV549937.1|AV549937 AV549937 Arabidopsis thaliana roots ... 50 0.001
gb|AV551556.1|AV551556 AV551556 Arabidopsis thaliana roots ... 50 0.001
gb|CK118104.1|CK118104 218b13.p1 AtM1 Arabidopsis thaliana ... 50 0.001
gb|CK120238.1|CK120238 208b17.p1 AtM1 Arabidopsis thaliana ... 50 0.001
gb|CK120402.1|CK120402 218m24.p1 AtM1 Arabidopsis thaliana ... 50 0.001
gb|CK120542.1|CK120542 207e07.p1 AtM1 Arabidopsis thaliana ... 50 0.001
gb|CB252514.1|CB252514 24-E018360-019-007-O05-T7R MPIZ-ADIS... 50 0.001
gb|BP798132.1|BP798132 BP798132 RAFL14 Arabidopsis thaliana... 50 0.001
gb|BP798931.1|BP798931 BP798931 RAFL14 Arabidopsis thaliana... 50 0.001
gb|BP813453.1|BP813453 BP813453 RAFL19 Arabidopsis thaliana... 50 0.001
gb|BP815697.1|BP815697 BP815697 RAFL19 Arabidopsis thaliana... 50 0.001
gb|BP822031.1|BP822031 BP822031 RAFL19 Arabidopsis thaliana... 50 0.001
gb|BP841185.1|BP841185 BP841185 RAFL19 Arabidopsis thaliana... 50 0.001
gb|BP846532.1|BP846532 BP846532 RAFL21 Arabidopsis thaliana... 50 0.001
gb|BP846893.1|BP846893 BP846893 RAFL21 Arabidopsis thaliana... 50 0.001
gb|BP856409.1|BP856409 BP856409 RAFL21 Arabidopsis thaliana... 50 0.001
gb|BP857464.1|BP857464 BP857464 RAFL21 Arabidopsis thaliana... 50 0.001
gb|BP859394.1|BP859394 BP859394 RAFL21 Arabidopsis thaliana... 50 0.001
gb|AF044914.1|AF044914 Arabidopsis thaliana putative histon... 50 0.001
emb|AX139020.1| Sequence 7 from Patent EP1094112 50 0.001
gb|AY059893.1| Arabidopsis thaliana histone deacetylase-lik... 50 0.001
gb|AY079014.1| Arabidopsis thaliana AT5g22650/MDJ22_7 mRNA,... 50 0.001
gb|AF195546.1| Arabidopsis thaliana putative histone deacet... 50 0.001
gb|AY122890.1| Arabidopsis thaliana AT5g22650/MDJ22_7 mRNA,... 50 0.001
emb|AX507800.1| Sequence 2495 from Patent WO0216655 50 0.001
dbj|AB006699.1| Arabidopsis thaliana genomic DNA, chromosom... 50 0.001
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 50 0.001
ref|NM_180725.1| Arabidopsis thaliana HD2B (HISTONE DEACETY... 50 0.001
ref|NM_122171.2| Arabidopsis thaliana HD2B (HISTONE DEACETY... 50 0.001
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 50 0.001
gb|BP802297.1|BP802297 BP802297 RAFL14 Arabidopsis thaliana... 48 0.004
gb|BP830937.1|BP830937 BP830937 RAFL19 Arabidopsis thaliana... 42 0.24
gb|BP845407.1|BP845407 BP845407 RAFL21 Arabidopsis thaliana... 42 0.24
gb|BP861016.1|BP861016 BP861016 RAFL21 Arabidopsis thaliana... 42 0.24
gb|BP861814.1|BP861814 BP861814 RAFL21 Arabidopsis thaliana... 42 0.24
gb|BP862705.1|BP862705 BP862705 RAFL21 Arabidopsis thaliana... 42 0.24
gb|BP867674.1|BP867674 BP867674 RAFL21 Arabidopsis thaliana... 42 0.24
>gb|BP799562.1|BP799562 BP799562 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-11-J09 5',
mRNA sequence
Length = 408
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatcgaa 988
||||||| |||||||||||||||| ||||||||||||||
Sbjct: 308 tgtgtgaaagctcaaactctttatccaaaaccaaatcgaa 269
>gb|BP822015.1|BP822015 BP822015 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-59-P13 5',
mRNA sequence
Length = 392
Score = 56.0 bits (28), Expect = 2e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatcgaa 988
||||||| |||||||||||||||| ||||||||||||||
Sbjct: 309 tgtgtgaaagctcaaactctttatcaaaaaccaaatcgaa 270
>gb|Z24526.1|Z24526 ATTS968 Ra147.1 Arabidopsis thaliana cDNA clone RaR106 5', mRNA
sequence
Length = 333
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 199 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 163
>gb|T45874.1|T45874 9137 Lambda-PRL2 Arabidopsis thaliana cDNA clone 133F15T7, mRNA
sequence
Length = 504
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 297 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 261
>gb|BE523968.1|BE523968 M44A9STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M44A9 5', mRNA sequence
Length = 422
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 292 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 256
>gb|BE525763.1|BE525763 M63O18STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600034272R1 5', mRNA sequence
Length = 249
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 194 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 158
>gb|BE844690.1|BE844690 AD01A07T7 AD A. thaliana (Col-0 gl1) library enriched for
salt-induced transcripts; 10-14 day seedlings; 4h 160mM
NaCl stress Arabidopsis thaliana cDNA clone AD01A07
similar to (AF044914) putative histone deacetylase, mRNA
sequence
Length = 728
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 290 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 254
>gb|AV826579.1|AV826579 AV826579 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-18-E14 5',
mRNA sequence
Length = 633
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 312 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 276
>gb|AV829608.1|AV829608 AV829608 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-49-A18 5',
mRNA sequence
Length = 460
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 311 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 275
>gb|AV831406.1|AV831406 AV831406 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-88-N19 5',
mRNA sequence
Length = 480
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 311 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 275
>gb|BU634928.1|BU634928 002G09 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 738
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 255 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 219
>gb|BU636759.1|BU636759 011C09 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 740
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 238 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 202
>gb|CB264150.1|CB264150 87-E014994-035-003-M22-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000M223Q 5-PRIME, mRNA sequence
Length = 586
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 243 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 207
>gb|AV549937.1|AV549937 AV549937 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ106a10R 5', mRNA sequence
Length = 327
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 275 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 239
>gb|AV551556.1|AV551556 AV551556 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ128c12R 5', mRNA sequence
Length = 378
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 294 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 258
>gb|CK118104.1|CK118104 218b13.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B13218
5-PRIME, mRNA sequence
Length = 753
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 267 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 231
>gb|CK120238.1|CK120238 208b17.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B17208
5-PRIME, mRNA sequence
Length = 774
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 267 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 231
>gb|CK120402.1|CK120402 218m24.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011M24218
5-PRIME, mRNA sequence
Length = 734
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 267 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 231
>gb|CK120542.1|CK120542 207e07.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011E07207
5-PRIME, mRNA sequence
Length = 781
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 295 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 259
>gb|CB252514.1|CB252514 24-E018360-019-007-O05-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768O057Q 5-PRIME, mRNA sequence
Length = 651
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 310 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 274
>gb|BP798132.1|BP798132 BP798132 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-06-B19 5',
mRNA sequence
Length = 390
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 311 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 275
>gb|BP798931.1|BP798931 BP798931 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-09-B06 5',
mRNA sequence
Length = 399
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 307 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 271
>gb|BP813453.1|BP813453 BP813453 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-06-H18 5',
mRNA sequence
Length = 388
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 306 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 270
>gb|BP815697.1|BP815697 BP815697 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-39-K04 5',
mRNA sequence
Length = 368
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 306 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 270
>gb|BP822031.1|BP822031 BP822031 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-60-A11 5',
mRNA sequence
Length = 384
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 306 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 270
>gb|BP841185.1|BP841185 BP841185 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-32-H03 5',
mRNA sequence
Length = 394
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 306 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 270
>gb|BP846532.1|BP846532 BP846532 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-97-E19 5',
mRNA sequence
Length = 406
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 309 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 273
>gb|BP846893.1|BP846893 BP846893 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-98-J20 5',
mRNA sequence
Length = 404
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 310 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 274
>gb|BP856409.1|BP856409 BP856409 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-29-O06 5',
mRNA sequence
Length = 361
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 306 tgtgtgaaagctcaaactctttatccaaaaccaaatc 270
>gb|BP857464.1|BP857464 BP857464 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-33-K19 5',
mRNA sequence
Length = 372
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 310 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 274
>gb|BP859394.1|BP859394 BP859394 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-40-I15 5',
mRNA sequence
Length = 399
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 303 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 267
>gb|AF044914.1|AF044914 Arabidopsis thaliana putative histone deacetylase (HD2) mRNA,
complete cds
Length = 918
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 238 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 202
>emb|AX139020.1| Sequence 7 from Patent EP1094112
Length = 1218
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 298 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 262
>gb|AY059893.1| Arabidopsis thaliana histone deacetylase-like protein (At5g22650;
MDJ22.7) mRNA, complete cds
Length = 1172
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 312 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 276
>gb|AY079014.1| Arabidopsis thaliana AT5g22650/MDJ22_7 mRNA, complete cds
Length = 1193
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 310 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 274
>gb|AF195546.1| Arabidopsis thaliana putative histone deacetylase (HD2B) mRNA,
complete cds
Length = 1187
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 298 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 262
>gb|AY122890.1| Arabidopsis thaliana AT5g22650/MDJ22_7 mRNA, complete cds
Length = 921
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 238 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 202
>emb|AX507800.1| Sequence 2495 from Patent WO0216655
Length = 921
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 238 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 202
>dbj|AB006699.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDJ22
Length = 77363
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 31185 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 31149
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 7205078 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 7205042
>ref|NM_180725.1| Arabidopsis thaliana HD2B (HISTONE DEACETYLASE 2B) AT5G22650 (HD2B)
transcript variant AT5G22650.1 mRNA, complete cds
Length = 1195
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 312 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 276
>ref|NM_122171.2| Arabidopsis thaliana HD2B (HISTONE DEACETYLASE 2B) AT5G22650 (HD2B)
transcript variant AT5G22650.2 mRNA, complete cds
Length = 1200
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 294 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 258
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 50.1 bits (25), Expect = 0.001
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||||||||
Sbjct: 7534710 tgtgtgaaagctcaaactctttatcaaaaaccaaatc 7534674
>gb|BP802297.1|BP802297 BP802297 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-23-M10 5',
mRNA sequence
Length = 365
Score = 48.1 bits (24), Expect = 0.004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 958 gctcaaactctttattgaaaaccaaatc 985
||||||||||||||| ||||||||||||
Sbjct: 302 gctcaaactctttatcgaaaaccaaatc 275
>gb|BP830937.1|BP830937 BP830937 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-87-E23 5',
mRNA sequence
Length = 391
Score = 42.1 bits (21), Expect = 0.24
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 957 agctcaaactctttattgaaaaccaaatc 985
|||||||||||||||| |||||||||||
Sbjct: 299 agctcaaactctttatcaaaaaccaaatc 271
>gb|BP845407.1|BP845407 BP845407 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-93-J01 5',
mRNA sequence
Length = 385
Score = 42.1 bits (21), Expect = 0.24
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 957 agctcaaactctttattgaaaaccaaatc 985
|||||||||||||||| |||||||||||
Sbjct: 301 agctcaaactctttatcaaaaaccaaatc 273
>gb|BP861016.1|BP861016 BP861016 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-46-A10 5',
mRNA sequence
Length = 367
Score = 42.1 bits (21), Expect = 0.24
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| ||||||||||
Sbjct: 306 tgtgtgaaagctcaaactctttatccgaaaccaaatc 270
>gb|BP861814.1|BP861814 BP861814 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-48-P21 5',
mRNA sequence
Length = 370
Score = 42.1 bits (21), Expect = 0.24
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 957 agctcaaactctttattgaaaaccaaatc 985
|||||||||||||||| |||||||||||
Sbjct: 300 agctcaaactctttatcaaaaaccaaatc 272
>gb|BP862705.1|BP862705 BP862705 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-64-C07 5',
mRNA sequence
Length = 383
Score = 42.1 bits (21), Expect = 0.24
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 957 agctcaaactctttattgaaaaccaaatc 985
|||||||||||||||| |||||||||||
Sbjct: 300 agctcaaactctttatcaaaaaccaaatc 272
>gb|BP867674.1|BP867674 BP867674 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-81-N08 5',
mRNA sequence
Length = 408
Score = 42.1 bits (21), Expect = 0.24
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 949 tgtgtgacagctcaaactctttattgaaaaccaaatc 985
||||||| |||||||||||||||| |||||| ||||
Sbjct: 309 tgtgtgaaagctcaaactctttatccaaaacccaatc 273
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 741,062
Number of Sequences: 1013581
Number of extensions: 741062
Number of successful extensions: 57433
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56686
Number of HSP's gapped (non-prelim): 747
length of query: 1297
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1277
effective length of database: 888,669,252
effective search space: 1134830634804
effective search space used: 1134830634804
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)