BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3995470.2.1
(744 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptrnew|AAP53674|AAP53674 Hypothetical protein. 111 1e-23
sptr|Q8LNC7|Q8LNC7 Hypothetical protein similar to putative DNA ... 111 1e-23
sptrnew|CAE05966|CAE05966 OSJNBa0063C18.7 protein. 85 9e-16
sptrnew|CAD41854|CAD41854 OSJNBb0079B02.13 protein. 85 9e-16
sptr|Q9FSQ4|Q9FSQ4 Putative DNA binding protein. 85 9e-16
sptr|Q8GW32|Q8GW32 Hypothetical protein (At1g26948). 84 2e-15
sptr|Q9LJX1|Q9LJX1 DNA-binding protein-like. 84 2e-15
sptr|Q9FLE9|Q9FLE9 DNA-binding protein-like. 82 6e-15
sptr|Q8L919|Q8L919 DNA-binding protein-like. 82 9e-15
sptr|Q9CA64|Q9CA64 Putative DNA-binding protein (At1g74500). 81 1e-14
sptr|Q9LXG5|Q9LXG5 Hypothetical protein (Putative bHLH protein). 79 5e-14
sptr|Q9STU2|Q9STU2 Hypothetical 8.8 kDa protein. 71 2e-11
sptrnew|BAC78384|BAC78384 Upstream stimulatory factor 1 BD. 35 0.78
sptr|Q8R4E5|Q8R4E5 Upstream transcription factor 1 short form. 35 0.78
sptr|Q810L6|Q810L6 Similar to upstream transcription factor 1. 35 0.78
sptrnew|AAH35505|AAH35505 USF1 protein. 35 0.78
sptr|O35410|O35410 Transcription factor USF-1. 35 0.78
sptr|O09135|O09135 USF1 protein. 35 0.78
sw|O02818|USF1_RABIT Upstream stimulatory factor 1 (Major late t... 35 0.78
sw|Q61069|USF1_MOUSE Upstream stimulatory factor 1 (Major late t... 35 0.78
sw|P22415|USF1_HUMAN Upstream stimulatory factor 1 (Major late t... 35 0.78
sptr|Q8NJV9|Q8NJV9 RIP defective (EC 2.1.1.73) (Modification met... 33 3.0
sptr|Q8RUR3|Q8RUR3 OSJNBb0008G24.27 protein (P0491F11.17 protein). 33 3.9
sw|O35780|BHB2_RAT Class B basic helix-loop-helix protein 2 (bHL... 32 8.6
>sptrnew|AAP53674|AAP53674 Hypothetical protein.
Length = 88
Score = 111 bits (277), Expect = 1e-23
Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 3/86 (3%)
Frame = +2
Query: 86 GRR--GRISDDEINELISKLQALLPEXXXXXXXXXXX-XXKLLKETCAYVKSLHREVDDL 256
GRR GRI+DDEINELISKLQ+LLPE KLLKE C+Y+KSLHREVDDL
Sbjct: 3 GRRASGRITDDEINELISKLQSLLPESSRRRGATSRSPATKLLKEMCSYIKSLHREVDDL 62
Query: 257 SERLSGLMATMDNDSPQAEIIRSLLR 334
SERLS LMATMD++SPQA+IIRSLLR
Sbjct: 63 SERLSELMATMDSNSPQADIIRSLLR 88
>sptr|Q8LNC7|Q8LNC7 Hypothetical protein similar to putative DNA
binding proteins.
Length = 88
Score = 111 bits (277), Expect = 1e-23
Identities = 61/86 (70%), Positives = 68/86 (79%), Gaps = 3/86 (3%)
Frame = +2
Query: 86 GRR--GRISDDEINELISKLQALLPEXXXXXXXXXXX-XXKLLKETCAYVKSLHREVDDL 256
GRR GRI+DDEINELISKLQ+LLPE KLLKE C+Y+KSLHREVDDL
Sbjct: 3 GRRASGRITDDEINELISKLQSLLPESSRRRGATSRSPATKLLKEMCSYIKSLHREVDDL 62
Query: 257 SERLSGLMATMDNDSPQAEIIRSLLR 334
SERLS LMATMD++SPQA+IIRSLLR
Sbjct: 63 SERLSELMATMDSNSPQADIIRSLLR 88
>sptrnew|CAE05966|CAE05966 OSJNBa0063C18.7 protein.
Length = 104
Score = 85.1 bits (209), Expect = 9e-16
Identities = 44/85 (51%), Positives = 59/85 (69%)
Frame = +2
Query: 77 SSGGRRGRISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDL 256
SS R IS+D+I EL+SKLQALLPE ++L+ETC+Y++SLH+EVD+L
Sbjct: 19 SSSSSRTSISEDQIAELLSKLQALLPESQARNGAHRGSAARVLQETCSYIRSLHQEVDNL 78
Query: 257 SERLSGLMATMDNDSPQAEIIRSLL 331
SE L+ L+A+ D S QA +IRSLL
Sbjct: 79 SETLAQLLASPDVTSDQAAVIRSLL 103
>sptrnew|CAD41854|CAD41854 OSJNBb0079B02.13 protein.
Length = 104
Score = 85.1 bits (209), Expect = 9e-16
Identities = 44/85 (51%), Positives = 59/85 (69%)
Frame = +2
Query: 77 SSGGRRGRISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDL 256
SS R IS+D+I EL+SKLQALLPE ++L+ETC+Y++SLH+EVD+L
Sbjct: 19 SSSSSRTSISEDQIAELLSKLQALLPESQARNGAHRGSAARVLQETCSYIRSLHQEVDNL 78
Query: 257 SERLSGLMATMDNDSPQAEIIRSLL 331
SE L+ L+A+ D S QA +IRSLL
Sbjct: 79 SETLAQLLASPDVTSDQAAVIRSLL 103
>sptr|Q9FSQ4|Q9FSQ4 Putative DNA binding protein.
Length = 104
Score = 85.1 bits (209), Expect = 9e-16
Identities = 44/85 (51%), Positives = 59/85 (69%)
Frame = +2
Query: 77 SSGGRRGRISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDL 256
SS R IS+D+I EL+SKLQALLPE ++L+ETC+Y++SLH+EVD+L
Sbjct: 19 SSSSSRTSISEDQIAELLSKLQALLPESQARNGAHRGSAARVLQETCSYIRSLHQEVDNL 78
Query: 257 SERLSGLMATMDNDSPQAEIIRSLL 331
SE L+ L+A+ D S QA +IRSLL
Sbjct: 79 SETLAQLLASPDVTSDQAAVIRSLL 103
>sptr|Q8GW32|Q8GW32 Hypothetical protein (At1g26948).
Length = 94
Score = 84.0 bits (206), Expect = 2e-15
Identities = 43/78 (55%), Positives = 59/78 (75%)
Frame = +2
Query: 98 RISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL 277
RISDD+I++L+SKLQ L+PE K+L+ETC Y+++LHREVDDLS+RLS L
Sbjct: 16 RISDDQISDLVSKLQHLIPELRRRRSDKVSAS-KVLQETCNYIRNLHREVDDLSDRLSEL 74
Query: 278 MATMDNDSPQAEIIRSLL 331
+A+ D++S +A IIRSLL
Sbjct: 75 LASTDDNSAEAAIIRSLL 92
>sptr|Q9LJX1|Q9LJX1 DNA-binding protein-like.
Length = 92
Score = 84.0 bits (206), Expect = 2e-15
Identities = 40/78 (51%), Positives = 56/78 (71%)
Frame = +2
Query: 98 RISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL 277
RISDD++ +L+SKL+ LPE K+L+ETC Y++ LHREVD+LS+RLS L
Sbjct: 14 RISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLSQL 73
Query: 278 MATMDNDSPQAEIIRSLL 331
+ ++D DSP+A +IRSLL
Sbjct: 74 LDSVDEDSPEAAVIRSLL 91
>sptr|Q9FLE9|Q9FLE9 DNA-binding protein-like.
Length = 92
Score = 82.4 bits (202), Expect = 6e-15
Identities = 39/78 (50%), Positives = 58/78 (74%)
Frame = +2
Query: 98 RISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL 277
RISD+++ +L+SKL+ +LPE K+L+ETC Y+++L+REVD+LSERLS L
Sbjct: 14 RISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLSQL 73
Query: 278 MATMDNDSPQAEIIRSLL 331
+ ++D DSP+A +IRSLL
Sbjct: 74 LESVDEDSPEAAVIRSLL 91
>sptr|Q8L919|Q8L919 DNA-binding protein-like.
Length = 92
Score = 81.6 bits (200), Expect = 9e-15
Identities = 39/78 (50%), Positives = 55/78 (70%)
Frame = +2
Query: 98 RISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL 277
RISDD++ +L+SKL+ LPE +L+ETC Y++ LHREVD+LS+RLS L
Sbjct: 14 RISDDQMIDLVSKLRQFLPEIHERRRSDKVSASXVLQETCNYIRKLHREVDNLSDRLSQL 73
Query: 278 MATMDNDSPQAEIIRSLL 331
+ ++D DSP+A +IRSLL
Sbjct: 74 LDSVDEDSPEAAVIRSLL 91
>sptr|Q9CA64|Q9CA64 Putative DNA-binding protein (At1g74500).
Length = 93
Score = 81.3 bits (199), Expect = 1e-14
Identities = 42/78 (53%), Positives = 57/78 (73%)
Frame = +2
Query: 98 RISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL 277
RIS+D+IN+LI KLQ LLPE ++L++TC Y+++LHREVDDLSERLS L
Sbjct: 16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL 75
Query: 278 MATMDNDSPQAEIIRSLL 331
+A ++D+ QA +IRSLL
Sbjct: 76 LA--NSDTAQAALIRSLL 91
>sptr|Q9LXG5|Q9LXG5 Hypothetical protein (Putative bHLH protein).
Length = 94
Score = 79.3 bits (194), Expect = 5e-14
Identities = 37/78 (47%), Positives = 56/78 (71%)
Frame = +2
Query: 98 RISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL 277
RISDD+I +LISKL+ +PE K+L+ETC Y+++L++E DDLS+RL+ L
Sbjct: 15 RISDDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQL 74
Query: 278 MATMDNDSPQAEIIRSLL 331
+ ++D +SPQA +IRSL+
Sbjct: 75 LESIDPNSPQAAVIRSLI 92
>sptr|Q9STU2|Q9STU2 Hypothetical 8.8 kDa protein.
Length = 78
Score = 70.9 bits (172), Expect = 2e-11
Identities = 36/77 (46%), Positives = 53/77 (68%)
Frame = +2
Query: 101 ISDDEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGLM 280
I+D++IN+L+ +L LLPE ++L+ETC+Y+++L +EVDDLSERLS L+
Sbjct: 2 ITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLL 61
Query: 281 ATMDNDSPQAEIIRSLL 331
+ DS QA +IRSLL
Sbjct: 62 ES--TDSAQAALIRSLL 76
>sptrnew|BAC78384|BAC78384 Upstream stimulatory factor 1 BD.
Length = 251
Score = 35.4 bits (80), Expect = 0.78
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 154 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 213
Query: 287 MDND 298
+DND
Sbjct: 214 LDND 217
>sptr|Q8R4E5|Q8R4E5 Upstream transcription factor 1 short form.
Length = 251
Score = 35.4 bits (80), Expect = 0.78
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 154 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 213
Query: 287 MDND 298
+DND
Sbjct: 214 LDND 217
>sptr|Q810L6|Q810L6 Similar to upstream transcription factor 1.
Length = 296
Score = 35.4 bits (80), Expect = 0.78
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>sptrnew|AAH35505|AAH35505 USF1 protein.
Length = 310
Score = 35.4 bits (80), Expect = 0.78
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>sptr|O35410|O35410 Transcription factor USF-1.
Length = 310
Score = 35.4 bits (80), Expect = 0.78
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>sptr|O09135|O09135 USF1 protein.
Length = 310
Score = 35.4 bits (80), Expect = 0.78
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>sw|O02818|USF1_RABIT Upstream stimulatory factor 1 (Major late
transcription factor 1).
Length = 310
Score = 35.4 bits (80), Expect = 0.78
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>sw|Q61069|USF1_MOUSE Upstream stimulatory factor 1 (Major late
transcription factor 1).
Length = 310
Score = 35.4 bits (80), Expect = 0.78
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>sw|P22415|USF1_HUMAN Upstream stimulatory factor 1 (Major late
transcription factor 1).
Length = 310
Score = 35.4 bits (80), Expect = 0.78
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGL-MAT 286
D+IN I +L ++P+ +L + C Y++ L + LSE L GL
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQSKGGILSKACDYIQELRQSNHRLSEELQGLDQLQ 272
Query: 287 MDND 298
+DND
Sbjct: 273 LDND 276
>sptr|Q8NJV9|Q8NJV9 RIP defective (EC 2.1.1.73) (Modification
methylase) (Cytosine- specific methyltransferase).
Length = 839
Score = 33.5 bits (75), Expect = 3.0
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 218 AYVKSLHREVDDLSERLSGLMATMDNDSPQAEIIRSLLR*LQVQVPAMPLAAPVVRR--A 391
A ++ + V DL E +S L+ +D D + +R V+V A P +PV RR A
Sbjct: 661 AAAQAKQKTVIDLDEDISNLVLDLDQDRDDDRSDTATIRESSVEVEASPRVSPVRRRHPA 720
Query: 392 RPPS 403
PPS
Sbjct: 721 APPS 724
>sptr|Q8RUR3|Q8RUR3 OSJNBb0008G24.27 protein (P0491F11.17 protein).
Length = 394
Score = 33.1 bits (74), Expect = 3.9
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = -3
Query: 319 DDLGLGAVVVHGRHEPRQPL 260
++LG+GA VV+G EPRQPL
Sbjct: 191 EELGVGAAVVYGHREPRQPL 210
>sw|O35780|BHB2_RAT Class B basic helix-loop-helix protein 2
(bHLHB2) (Enhancer-of-split and hairy-related protein 2)
(SHARP-2).
Length = 411
Score = 32.0 bits (71), Expect = 8.6
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 110 DEINELISKLQALLPEXXXXXXXXXXXXXKLLKETCAYVKSLHREVDDLSERLSGLMA 283
D INE I++L+ LLPE +L+ T +VK+L +D +++ L +
Sbjct: 66 DRINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHVKALTNLIDQQQQKIMALQS 123
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,578,988
Number of Sequences: 1272877
Number of extensions: 6608152
Number of successful extensions: 25951
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 25066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25943
length of database: 406,886,216
effective HSP length: 120
effective length of database: 254,140,976
effective search space used: 32275903952
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)