BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2477970.2.1
(699 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q84MQ4|Q84MQ4 Putative ribosomal protein L27a. 264 9e-70
sptr|Q8GSE9|Q8GSE9 Putative 60S ribosomal protein L27a. 254 1e-66
sptrnew|AAM10305|AAM10305 At1g70600/F5A18_22. 240 1e-62
sptrnew|AAK82491|AAK82491 At1g70600/F5A18_22. 240 1e-62
sptrnew|AAK62576|AAK62576 At1g70600/F5A18_22. 240 1e-62
sptrnew|AAG52464|AAG52464 60S ribosomal protein L27A, 71521-71081. 240 1e-62
sw|P49637|R27C_ARATH 60S ribosomal protein L27a-3. 240 1e-62
sptr|O82529|O82529 Ribosomal protein L27a. 239 2e-62
sptr|Q9MAW6|Q9MAW6 60S ribosomal protein L27a. 238 5e-62
sptr|Q8LE80|Q8LE80 60S ribosomal protein L27A. 238 5e-62
sptrnew|AAN18111|AAN18111 At1g23290/F26F24_23. 234 8e-61
sw|Q9LR33|R27B_ARATH 60S ribosomal protein L27a-2. 234 8e-61
sptr|Q8ITC4|Q8ITC4 Ribosomal protein L22 (Fragment). 201 6e-51
sptr|Q9BKU5|Q9BKU5 Hypothetical 16.2 kDa protein. 199 4e-50
sptr|Q8ICI8|Q8ICI8 60S ribosomal protein L27a, putative. 198 6e-50
sw|P48160|RL2A_DICDI 60S ribosomal protein L27a. 197 1e-49
sw|O01358|RL2A_OSCBR 60S ribosomal protein L27a (Ribosomal prote... 196 3e-49
sptrnew|EAA22942|EAA22942 Ribosomal protein L27a. 194 7e-49
sptr|Q9CQ16|Q9CQ16 Ribosomal protein L27a (Ribosmal protein L27a). 194 1e-48
sw|P18445|RL2A_RAT 60S ribosomal protein L27a. 192 3e-48
sptr|Q90YU0|Q90YU0 Ribosomal protein L27a. 191 8e-48
sw|P46776|RL2A_HUMAN 60S ribosomal protein L27a. 190 2e-47
sw|P14115|RL2A_MOUSE 60S ribosomal protein L27a (L29). 189 2e-47
sptr|Q86D70|Q86D70 Ribosomal protein L27a. 187 1e-46
sw|P41092|RL2A_DROME 60S ribosomal protein L27a. 187 1e-46
sptrnew|EAA00079|EAA00079 ENSANGP00000017987 (Fragment). 187 1e-46
sptr|Q8JJ03|Q8JJ03 Ribosomal protein L27a. 186 3e-46
sptrnew|AAH53769|AAH53769 Hypothetical protein. 184 7e-46
sptr|Q90YG8|Q90YG8 Putative ribosomal protein L27A protein (Frag... 184 9e-46
sptr|Q962T8|Q962T8 Ribosomal protein L27A. 183 2e-45
>sptr|Q84MQ4|Q84MQ4 Putative ribosomal protein L27a.
Length = 146
Score = 264 bits (674), Expect = 9e-70
Identities = 125/136 (91%), Positives = 130/136 (95%), Gaps = 1/136 (0%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPP-KPI 406
FHKL N+F+CPAVN+ERLWSMVPTDKAAEAG KAP IDVTQFGY KVLGKG+LPP +PI
Sbjct: 61 FHKLSNRFHCPAVNVERLWSMVPTDKAAEAGAGKAPVIDVTQFGYTKVLGKGMLPPQRPI 120
Query: 407 VVKAKLISKVAEKKIK 454
VVKAKLISKVAEKKIK
Sbjct: 121 VVKAKLISKVAEKKIK 136
>sptr|Q8GSE9|Q8GSE9 Putative 60S ribosomal protein L27a.
Length = 146
Score = 254 bits (648), Expect = 1e-66
Identities = 120/136 (88%), Positives = 127/136 (93%), Gaps = 1/136 (0%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
MTT +KNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAE-AGGDKAPQIDVTQFGYFKVLGKGVLPPKPI 406
FH+LRNKFY PAVN+ERLWSMVP ++AAE AG KAP +DVTQFGYFKVLGKG+LP KPI
Sbjct: 61 FHRLRNKFYSPAVNVERLWSMVPAEQAAEAAGAGKAPLLDVTQFGYFKVLGKGLLPEKPI 120
Query: 407 VVKAKLISKVAEKKIK 454
VVKAKLISKVAEKKIK
Sbjct: 121 VVKAKLISKVAEKKIK 136
>sptrnew|AAM10305|AAM10305 At1g70600/F5A18_22.
Length = 146
Score = 240 bits (612), Expect = 1e-62
Identities = 113/136 (83%), Positives = 121/136 (88%), Gaps = 1/136 (0%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPP-KPI 406
FHKLRNKF+CP VN+++LWS+VP D A++ D P IDVTQ G+FKVLGKG LP KP
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120
Query: 407 VVKAKLISKVAEKKIK 454
VVKAKLISK AEKKIK
Sbjct: 121 VVKAKLISKTAEKKIK 136
>sptrnew|AAK82491|AAK82491 At1g70600/F5A18_22.
Length = 146
Score = 240 bits (612), Expect = 1e-62
Identities = 113/136 (83%), Positives = 121/136 (88%), Gaps = 1/136 (0%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPP-KPI 406
FHKLRNKF+CP VN+++LWS+VP D A++ D P IDVTQ G+FKVLGKG LP KP
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120
Query: 407 VVKAKLISKVAEKKIK 454
VVKAKLISK AEKKIK
Sbjct: 121 VVKAKLISKTAEKKIK 136
>sptrnew|AAK62576|AAK62576 At1g70600/F5A18_22.
Length = 146
Score = 240 bits (612), Expect = 1e-62
Identities = 113/136 (83%), Positives = 121/136 (88%), Gaps = 1/136 (0%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPP-KPI 406
FHKLRNKF+CP VN+++LWS+VP D A++ D P IDVTQ G+FKVLGKG LP KP
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120
Query: 407 VVKAKLISKVAEKKIK 454
VVKAKLISK AEKKIK
Sbjct: 121 VVKAKLISKTAEKKIK 136
>sptrnew|AAG52464|AAG52464 60S ribosomal protein L27A, 71521-71081.
Length = 146
Score = 240 bits (612), Expect = 1e-62
Identities = 113/136 (83%), Positives = 121/136 (88%), Gaps = 1/136 (0%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPP-KPI 406
FHKLRNKF+CP VN+++LWS+VP D A++ D P IDVTQ G+FKVLGKG LP KP
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120
Query: 407 VVKAKLISKVAEKKIK 454
VVKAKLISK AEKKIK
Sbjct: 121 VVKAKLISKTAEKKIK 136
>sw|P49637|R27C_ARATH 60S ribosomal protein L27a-3.
Length = 146
Score = 240 bits (612), Expect = 1e-62
Identities = 113/136 (83%), Positives = 121/136 (88%), Gaps = 1/136 (0%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPP-KPI 406
FHKLRNKF+CP VN+++LWS+VP D A++ D P IDVTQ G+FKVLGKG LP KP
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120
Query: 407 VVKAKLISKVAEKKIK 454
VVKAKLISK AEKKIK
Sbjct: 121 VVKAKLISKTAEKKIK 136
>sptr|O82529|O82529 Ribosomal protein L27a.
Length = 150
Score = 239 bits (610), Expect = 2e-62
Identities = 117/140 (83%), Positives = 124/140 (88%), Gaps = 5/140 (3%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTD--KAAEAGGDK--APQIDVTQFGYFKVLGKGVLPP 397
FHKLRNKFYCP VNI++LWS+VP D AGG K AP IDVTQ+GYFKVLGKGVLP
Sbjct: 61 FHKLRNKFYCPTVNIDKLWSLVPQDVKDKVAAGGAKGTAPLIDVTQYGYFKVLGKGVLPE 120
Query: 398 -KPIVVKAKLISKVAEKKIK 454
+ +VVKAKL+SK AEKKIK
Sbjct: 121 NQAVVVKAKLVSKNAEKKIK 140
>sptr|Q9MAW6|Q9MAW6 60S ribosomal protein L27a.
Length = 146
Score = 238 bits (607), Expect = 5e-62
Identities = 111/136 (81%), Positives = 119/136 (87%), Gaps = 1/136 (0%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
MTTRFKKN KKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNXKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPPK-PI 406
FH+LRNKFYCP VNI++LWS++P + +A AP IDVTQ GYFKVLGKG LP PI
Sbjct: 61 FHRLRNKFYCPVVNIDKLWSLLPQEAKEKADAQNAPVIDVTQHGYFKVLGKGFLPSSHPI 120
Query: 407 VVKAKLISKVAEKKIK 454
VVKAKL+SK AEKKIK
Sbjct: 121 VVKAKLVSKTAEKKIK 136
>sptr|Q8LE80|Q8LE80 60S ribosomal protein L27A.
Length = 146
Score = 238 bits (607), Expect = 5e-62
Identities = 112/136 (82%), Positives = 121/136 (88%), Gaps = 1/136 (0%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPP-KPI 406
FHKLRNKF+CP VN+++LWS+VP D A++ + P IDVTQ G+FKVLGKG LP KP
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKNNVPLIDVTQHGFFKVLGKGHLPENKPF 120
Query: 407 VVKAKLISKVAEKKIK 454
VVKAKLISK AEKKIK
Sbjct: 121 VVKAKLISKTAEKKIK 136
>sptrnew|AAN18111|AAN18111 At1g23290/F26F24_23.
Length = 146
Score = 234 bits (597), Expect = 8e-61
Identities = 110/136 (80%), Positives = 118/136 (86%), Gaps = 1/136 (0%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
M T KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPP-KPI 406
FHKLRNKF+CP VN+++LWS+VP D A++ D P IDVTQ G+FKVLGKG LP KP
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120
Query: 407 VVKAKLISKVAEKKIK 454
VVKAKLISK AEKKIK
Sbjct: 121 VVKAKLISKTAEKKIK 136
>sw|Q9LR33|R27B_ARATH 60S ribosomal protein L27a-2.
Length = 146
Score = 234 bits (597), Expect = 8e-61
Identities = 110/136 (80%), Positives = 118/136 (86%), Gaps = 1/136 (0%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
M T KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1 MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPP-KPI 406
FHKLRNKF+CP VN+++LWS+VP D A++ D P IDVTQ G+FKVLGKG LP KP
Sbjct: 61 FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120
Query: 407 VVKAKLISKVAEKKIK 454
VVKAKLISK AEKKIK
Sbjct: 121 VVKAKLISKTAEKKIK 136
>sptr|Q8ITC4|Q8ITC4 Ribosomal protein L22 (Fragment).
Length = 152
Score = 201 bits (512), Expect = 6e-51
Identities = 92/135 (68%), Positives = 109/135 (80%), Gaps = 2/135 (1%)
Frame = +2
Query: 56 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 235
T+ KK RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI FDKYHPGYFGKVGMRY+H
Sbjct: 8 TKLKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRYYH 67
Query: 236 KLRNKFYCPAVNIERLWSMV--PTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPPKPIV 409
K +NKF+CP VN+++LWS+V T + + DKAP IDV + GY+KVLGKG LP +P++
Sbjct: 68 KTQNKFFCPTVNLDKLWSLVSDQTREKYASSKDKAPVIDVVRAGYYKVLGKGHLPKQPVI 127
Query: 410 VKAKLISKVAEKKIK 454
VKA+ S+ AE KIK
Sbjct: 128 VKARFFSRSAELKIK 142
>sptr|Q9BKU5|Q9BKU5 Hypothetical 16.2 kDa protein.
Length = 145
Score = 199 bits (505), Expect = 4e-50
Identities = 91/135 (67%), Positives = 105/135 (77%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
M +K RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI DKYHPGYFGKVGMR
Sbjct: 1 MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPPKPIV 409
FH +N+ YCP VN+ERLWS+VP + +A G K+P ID T+ GYFKVLGKG+LP P++
Sbjct: 61 FHLNKNQHYCPTVNVERLWSLVPQEVRDKATGGKSPVIDCTKLGYFKVLGKGLLPETPLI 120
Query: 410 VKAKLISKVAEKKIK 454
VKA+ S AE+KIK
Sbjct: 121 VKARFFSHEAEQKIK 135
>sptr|Q8ICI8|Q8ICI8 60S ribosomal protein L27a, putative.
Length = 148
Score = 198 bits (503), Expect = 6e-50
Identities = 94/138 (68%), Positives = 111/138 (80%), Gaps = 3/138 (2%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
M TRFKKNRKKRGHVSAGHGR+GKHRKHPGGRG AGG+HH RI FDKYHPGYFGKVGMR+
Sbjct: 1 MATRFKKNRKKRGHVSAGHGRVGKHRKHPGGRGKAGGLHHMRINFDKYHPGYFGKVGMRH 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDK--APQIDVTQFGYFKVLGKGVLP-PK 400
+ L+N+ YCP +N+++LW ++P +K E +K AP IDVT+ GYFKVLG G L +
Sbjct: 61 LNLLKNRTYCPTINVDKLWGLLPEEKKKEFSENKDIAPVIDVTRKGYFKVLGNGKLKHNQ 120
Query: 401 PIVVKAKLISKVAEKKIK 454
PIVVKA+ S VAEKKIK
Sbjct: 121 PIVVKARYFSSVAEKKIK 138
>sw|P48160|RL2A_DICDI 60S ribosomal protein L27a.
Length = 148
Score = 197 bits (500), Expect = 1e-49
Identities = 91/138 (65%), Positives = 113/138 (81%), Gaps = 3/138 (2%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
M TRF K+RK RG V AG+GR+GKHRKHPGGRGNAGG+ HHRI FDKYHPGYFGK+GMR+
Sbjct: 1 MPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRH 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTD--KAAEAGGD-KAPQIDVTQFGYFKVLGKGVLPPK 400
FH LRN+++CP V++E++W++VP K+ A D AP +DVTQ G+FKVLG G+LP +
Sbjct: 61 FHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILPTQ 120
Query: 401 PIVVKAKLISKVAEKKIK 454
PI+VKA+ SKVAEKKIK
Sbjct: 121 PIIVKARYFSKVAEKKIK 138
>sw|O01358|RL2A_OSCBR 60S ribosomal protein L27a (Ribosomal protein
RPL-27).
Length = 145
Score = 196 bits (497), Expect = 3e-49
Identities = 88/135 (65%), Positives = 103/135 (76%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
M +K RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI DKYHPGYFGKVGMR
Sbjct: 1 MAHSLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPPKPIV 409
FH +N YCP VN++RLW++VP ++ + +KAP ID + GYFKVLGKG+LP +P++
Sbjct: 61 FHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPKQPLI 120
Query: 410 VKAKLISKVAEKKIK 454
VKAK S AE KIK
Sbjct: 121 VKAKFFSHEAENKIK 135
>sptrnew|EAA22942|EAA22942 Ribosomal protein L27a.
Length = 148
Score = 194 bits (494), Expect = 7e-49
Identities = 94/138 (68%), Positives = 110/138 (79%), Gaps = 3/138 (2%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
M TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRG AGGMHH RI FDKYHPGYFGKVGMR+
Sbjct: 1 MATRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGKAGGMHHMRINFDKYHPGYFGKVGMRH 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDK--APQIDVTQFGYFKVLGKGVLP-PK 400
+ L+N+ YC +NI++LW ++P +K E ++ AP IDVT+ GYFKVLG G L +
Sbjct: 61 LNLLKNRKYCRTINIDKLWGLLPEEKKQEFAKNENIAPVIDVTRVGYFKVLGNGNLEHNQ 120
Query: 401 PIVVKAKLISKVAEKKIK 454
PIVVKA+ S +AEKKIK
Sbjct: 121 PIVVKARYFSSIAEKKIK 138
>sptr|Q9CQ16|Q9CQ16 Ribosomal protein L27a (Ribosmal protein L27a).
Length = 148
Score = 194 bits (492), Expect = 1e-48
Identities = 89/138 (64%), Positives = 108/138 (78%), Gaps = 3/138 (2%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAGGDK---APQIDVTQFGYFKVLGKGVLPPK 400
+H RN+ +CP VN+++LW++V A +K AP IDV + GY+KVLGKG LP +
Sbjct: 61 YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPKQ 120
Query: 401 PIVVKAKLISKVAEKKIK 454
P++VKAK S+ AE+KIK
Sbjct: 121 PVIVKAKFFSRRAEEKIK 138
>sw|P18445|RL2A_RAT 60S ribosomal protein L27a.
Length = 147
Score = 192 bits (488), Expect = 3e-48
Identities = 88/136 (64%), Positives = 107/136 (78%), Gaps = 3/136 (2%)
Frame = +2
Query: 56 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 235
+R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR++H
Sbjct: 2 SRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYH 61
Query: 236 KLRNKFYCPAVNIERLWSMVPTDKAAEAGGDK---APQIDVTQFGYFKVLGKGVLPPKPI 406
RN+ +CP VN+++LW++V A +K AP IDV + GY+KVLGKG LP +P+
Sbjct: 62 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPKQPV 121
Query: 407 VVKAKLISKVAEKKIK 454
+VKAK S+ AE+KIK
Sbjct: 122 IVKAKFFSRRAEEKIK 137
>sptr|Q90YU0|Q90YU0 Ribosomal protein L27a.
Length = 148
Score = 191 bits (485), Expect = 8e-48
Identities = 88/138 (63%), Positives = 105/138 (76%), Gaps = 3/138 (2%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
M TR K RK RGHVS GHGR+GKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1 MPTRTSKTRKLRGHVSHGHGRVGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTD---KAAEAGGDKAPQIDVTQFGYFKVLGKGVLPPK 400
+H RN +CP +N+++LW++V A+ AP IDV + GYFKVLGKG LP +
Sbjct: 61 YHLKRNTIFCPTINLDKLWTLVSEQTRLNHAQKPDGPAPIIDVVRAGYFKVLGKGKLPKQ 120
Query: 401 PIVVKAKLISKVAEKKIK 454
P++VKAK S+ AE+KIK
Sbjct: 121 PVIVKAKFFSRRAEEKIK 138
>sw|P46776|RL2A_HUMAN 60S ribosomal protein L27a.
Length = 147
Score = 190 bits (482), Expect = 2e-47
Identities = 86/136 (63%), Positives = 107/136 (78%), Gaps = 3/136 (2%)
Frame = +2
Query: 56 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 235
+R +K RK RGHVS GHGRIGKHRKHPGGRGNAGG+HHHRI FDKYHPGYFGKVGM+++H
Sbjct: 2 SRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYH 61
Query: 236 KLRNKFYCPAVNIERLWSMVPTDKAAEAGGDK---APQIDVTQFGYFKVLGKGVLPPKPI 406
RN+ +CP VN+++LW++V A +K AP IDV + GY+KVLGKG LP +P+
Sbjct: 62 LKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPV 121
Query: 407 VVKAKLISKVAEKKIK 454
+VKAK S+ AE+KIK
Sbjct: 122 IVKAKFFSRRAEEKIK 137
>sw|P14115|RL2A_MOUSE 60S ribosomal protein L27a (L29).
Length = 147
Score = 189 bits (481), Expect = 2e-47
Identities = 87/136 (63%), Positives = 106/136 (77%), Gaps = 3/136 (2%)
Frame = +2
Query: 56 TRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFH 235
+R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR++H
Sbjct: 2 SRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYH 61
Query: 236 KLRNKFYCPAVNIERLWSMVPTDKAAEAGGDK---APQIDVTQFGYFKVLGKGVLPPKPI 406
RN+ +CP VN+++ W++V A +K AP IDV + GY+KVLGKG LP +P+
Sbjct: 62 LKRNQSFCPTVNLDKPWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPKQPV 121
Query: 407 VVKAKLISKVAEKKIK 454
+VKAK S+ AE+KIK
Sbjct: 122 IVKAKFFSRRAEEKIK 137
>sptr|Q86D70|Q86D70 Ribosomal protein L27a.
Length = 147
Score = 187 bits (475), Expect = 1e-46
Identities = 88/137 (64%), Positives = 105/137 (76%), Gaps = 2/137 (1%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
MT + KK RK RGHVS G GRIGKHRKHPGGRGNAGG HHHRI FDKYHPGYFGKVGMR+
Sbjct: 1 MTAKLKKTRKLRGHVSHGKGRIGKHRKHPGGRGNAGGQHHHRINFDKYHPGYFGKVGMRH 60
Query: 230 FHKLRNKFYCPAVNIERLWSMV--PTDKAAEAGGDKAPQIDVTQFGYFKVLGKGVLPPKP 403
H RN+ +CPAVN+++LW++V T D AP IDV + GY+KV+GKG LP +P
Sbjct: 61 LHMKRNQKHCPAVNLDKLWTLVSDQTRDVYAKKTDVAPVIDVVRAGYYKVIGKGRLPKQP 120
Query: 404 IVVKAKLISKVAEKKIK 454
++VKAK S+ AE+KIK
Sbjct: 121 VIVKAKFFSRRAEEKIK 137
>sw|P41092|RL2A_DROME 60S ribosomal protein L27a.
Length = 149
Score = 187 bits (475), Expect = 1e-46
Identities = 88/133 (66%), Positives = 104/133 (78%), Gaps = 3/133 (2%)
Frame = +2
Query: 65 KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLR 244
KK RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR FH R
Sbjct: 7 KKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRNFHLRR 66
Query: 245 NKFYCPAVNIERLWSMVPTDKAAEAGGD---KAPQIDVTQFGYFKVLGKGVLPPKPIVVK 415
+ P +N+++LWS+V +K AE + KAP ID+ +FGY+K+LG+G LP +P++VK
Sbjct: 67 QHKFRPEINLDKLWSLVGAEKFAELEKEKSTKAPVIDLVKFGYYKLLGRGHLPARPVIVK 126
Query: 416 AKLISKVAEKKIK 454
AK SK AE KIK
Sbjct: 127 AKYFSKKAEDKIK 139
>sptrnew|EAA00079|EAA00079 ENSANGP00000017987 (Fragment).
Length = 231
Score = 187 bits (474), Expect = 1e-46
Identities = 91/147 (61%), Positives = 105/147 (71%), Gaps = 4/147 (2%)
Frame = +2
Query: 26 CPGKSAAAMTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGY 205
CP + R K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGY
Sbjct: 77 CPSTMMSLKVRR--KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGY 134
Query: 206 FGKVGMRYFHKLRNKFYCPAVNIERLWSMVPTDKAAEA--GGDKAPQIDVTQFGYFKVLG 379
FGKVGMR FH RN +CP +N+ LWS+VP EA +K P +D+ QFGYFK+LG
Sbjct: 135 FGKVGMRNFHLNRNHKFCPTINLSHLWSLVPEKVREEAKKNPEKVPVVDLVQFGYFKLLG 194
Query: 380 KGVLPPK--PIVVKAKLISKVAEKKIK 454
G LP PI+VKAK S++AE++IK
Sbjct: 195 SGGLPKTCGPIIVKAKFFSRLAEERIK 221
>sptr|Q8JJ03|Q8JJ03 Ribosomal protein L27a.
Length = 148
Score = 186 bits (471), Expect = 3e-46
Identities = 86/138 (62%), Positives = 103/138 (74%), Gaps = 3/138 (2%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
M T+ K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1 MPTKKTKTRKVRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTDKAAEAG---GDKAPQIDVTQFGYFKVLGKGVLPPK 400
+H RN +CP +N+++LW++V G AP ID + GY+KVLGKG LP +
Sbjct: 61 YHLKRNTAHCPTINLDKLWTLVSEQTRLNYGKKPDGPAPIIDAVRAGYYKVLGKGKLPKQ 120
Query: 401 PIVVKAKLISKVAEKKIK 454
P++VKAK S+ AE+KIK
Sbjct: 121 PVIVKAKFFSRRAEEKIK 138
>sptrnew|AAH53769|AAH53769 Hypothetical protein.
Length = 148
Score = 184 bits (468), Expect = 7e-46
Identities = 84/138 (60%), Positives = 105/138 (76%), Gaps = 3/138 (2%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
M ++ +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1 MPSKLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTD---KAAEAGGDKAPQIDVTQFGYFKVLGKGVLPPK 400
+H +N+ +CP +N+++LW++V A+ AP ID GY+KVLGKG LP +
Sbjct: 61 YHLKKNQSFCPTINLDKLWTLVSEQTRLNHAKNLEGPAPIIDAVHAGYYKVLGKGKLPKQ 120
Query: 401 PIVVKAKLISKVAEKKIK 454
P++VKAK S+ AE+KIK
Sbjct: 121 PVIVKAKFFSRKAEEKIK 138
>sptr|Q90YG8|Q90YG8 Putative ribosomal protein L27A protein
(Fragment).
Length = 144
Score = 184 bits (467), Expect = 9e-46
Identities = 86/132 (65%), Positives = 101/132 (76%), Gaps = 3/132 (2%)
Frame = +2
Query: 68 KNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRN 247
K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR++H RN
Sbjct: 3 KTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRN 62
Query: 248 KFYCPAVNIERLWSMVPTD---KAAEAGGDKAPQIDVTQFGYFKVLGKGVLPPKPIVVKA 418
+CP VN+++LW++V A+ AP ID + GYFKVLGKG LP +P++VKA
Sbjct: 63 TVHCPTVNLDKLWTLVSEQTRLNYAKKPEGPAPIIDAVRAGYFKVLGKGKLPKQPVIVKA 122
Query: 419 KLISKVAEKKIK 454
K S+ AE+KIK
Sbjct: 123 KFFSRRAEEKIK 134
>sptr|Q962T8|Q962T8 Ribosomal protein L27A.
Length = 148
Score = 183 bits (465), Expect = 2e-45
Identities = 85/138 (61%), Positives = 104/138 (75%), Gaps = 3/138 (2%)
Frame = +2
Query: 50 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 229
M T KK RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI DKYHPGYFGK+GMR
Sbjct: 1 MATSKKKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGEHHHRINMDKYHPGYFGKLGMRN 60
Query: 230 FHKLRNKFYCPAVNIERLWSMVPTD---KAAEAGGDKAPQIDVTQFGYFKVLGKGVLPPK 400
+H+ +NK + P +N+++LW++V K A A K P I++ + GY+K+LGKG LP +
Sbjct: 61 YHERKNKLFNPVLNLDKLWTLVSEQARLKYATATDGKVPVINIVKAGYYKLLGKGKLPKQ 120
Query: 401 PIVVKAKLISKVAEKKIK 454
P++VKAK SK AEKKIK
Sbjct: 121 PVIVKAKFFSKTAEKKIK 138
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,317,138
Number of Sequences: 1272877
Number of extensions: 8480625
Number of successful extensions: 27373
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27094
length of database: 406,886,216
effective HSP length: 119
effective length of database: 255,413,853
effective search space used: 28861765389
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)