BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192679.2.1
(1274 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q9FY12|Q9FY12 Replication protein A2. 377 e-103
sptr|Q9AVM2|Q9AVM2 Replication protein A 30kDa. 372 e-102
sptrnew|AAP58374|AAP58374 RPA 32kDa. 175 1e-42
sptr|Q9ZQ19|Q9ZQ19 Putative replication protein A1. 173 4e-42
sptr|Q8LFJ8|Q8LFJ8 Putative replication factor A. 148 2e-34
sptr|Q9M8T4|Q9M8T4 Putative replication factor A. 145 1e-33
sw|Q62193|RFA2_MOUSE Replication protein A 32 kDa subunit (RP-A)... 97 5e-19
sptr|Q99KL9|Q99KL9 Similar to replication protein A2. 96 1e-18
sw|Q63528|RFA2_RAT Replication protein A 32 kDa subunit (RP-A) (... 94 4e-18
sw|P15927|RFA2_HUMAN Replication protein A 32 kDa subunit (RP-A)... 89 1e-16
sw|Q92373|RFA2_SCHPO Replication factor-A protein 2 (Single-stra... 86 1e-15
sptr|Q8SXG3|Q8SXG3 RH07841p. 84 3e-15
sptr|Q9VIH1|Q9VIH1 CG9273 protein (GM04951p). 84 4e-15
sptr|Q9DDG4|Q9DDG4 Replication protein A. 80 8e-14
sptr|Q8NJM1|Q8NJM1 Possible replication factor-a protein. 78 3e-13
sptrnew|EAA32731|EAA32731 Hypothetical protein. 77 7e-13
sw|P26754|RFA2_YEAST Replication factor-A protein 2 (RF-A) (DNA ... 73 1e-11
sptr|Q8SRS2|Q8SRS2 Replication factor A protein 2 (32KDA subunit). 70 9e-11
sptrnew|EAA43853|EAA43853 ENSANGP00000023457 (Fragment). 69 2e-10
sptrnew|EAA12428|EAA12428 ENSANGP00000018307. 69 2e-10
sw|Q13156|RFA4_HUMAN Replication protein A 30 kDa subunit (RP-A)... 56 1e-06
sw|Q23697|RFA2_CRIFA Replication protein A 28 kDa subunit (RP-A)... 42 0.019
sptr|Q95Y97|Q95Y97 Hypothetical 32.0 kDa protein. 42 0.019
sptr|Q9LMK5|Q9LMK5 F10K1.17 (Hypothetical protein). 36 1.0
sptrnew|AAP37459|AAP37459 Replication protein A2. 35 2.3
sptr|Q9HP56|Q9HP56 Vng1794c. 35 2.3
sptr|Q9H668|Q9H668 Hypothetical protein FLJ22559. 34 5.2
sptr|O01505|O01505 Hypothetical 135.4 kDa protein. 33 6.8
sptr|Q8VB53|Q8VB53 Wsv143. 33 8.9
sptr|Q91LF6|Q91LF6 ORF84. 33 8.9
>sptr|Q9FY12|Q9FY12 Replication protein A2.
Length = 279
Score = 377 bits (968), Expect = e-103
Identities = 193/276 (69%), Positives = 226/276 (81%), Gaps = 4/276 (1%)
Frame = +2
Query: 80 MMPLSQTD-FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSG-TGDKGAP 253
MM SQ D FSPSQFTSSQNAAADSTTPSK RGASSTMPLTVKQ+ +AQQSG TG+KGAP
Sbjct: 1 MMSFSQPDAFSPSQFTSSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSGITGEKGAP 60
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGM 433
F+V+GVE AN+RLVG+V+ K ER TDV+FT+DDGTGRLDFIRWVND +DS ETAA+QNGM
Sbjct: 61 FVVDGVETANVRLVGLVSGKTERNTDVSFTIDDGTGRLDFIRWVNDGADSAETAAVQNGM 120
Query: 434 YIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSM 613
Y++VIGSLKGLQERKRATAF+IRP+TD+NEVTLHFIQCVRMH+EN + + GSPA+ S+M
Sbjct: 121 YVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHFIQCVRMHLENTKSQIGSPAKTYSAM 180
Query: 614 GVSFSNGFXXXXXXXXXXXXXAPVTS--GSSDTDLHTQVLNFFNEPANLESEHGVHVDEV 787
G S SNGF APV S S TDL+T+VLN F EPAN+ESEHGVH+DE+
Sbjct: 181 GSSSSNGFSEMTTPTSVKSNPAPVLSVTNGSKTDLNTEVLNVFREPANVESEHGVHIDEI 240
Query: 788 LKRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKA 895
+KRF+ LP+ +I AIDY D G +YSTIDE HYK+
Sbjct: 241 VKRFR-LPEAKIKVAIDYLADIGHIYSTIDESHYKS 275
>sptr|Q9AVM2|Q9AVM2 Replication protein A 30kDa.
Length = 279
Score = 372 bits (956), Expect = e-102
Identities = 191/276 (69%), Positives = 224/276 (81%), Gaps = 4/276 (1%)
Frame = +2
Query: 80 MMPLSQTD-FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSG-TGDKGAP 253
MM SQ D FSPSQFTSSQNAAADSTTPSK RGASSTMPLTVKQ+ +AQQSG TG+KGAP
Sbjct: 1 MMSFSQPDAFSPSQFTSSQNAAADSTTPSKSRGASSTMPLTVKQISEAQQSGITGEKGAP 60
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGM 433
F+V+GVE AN+RLVG+V+ K ER TDV+F +DDGTGRLDFIRWVND +DS ETAA+QNGM
Sbjct: 61 FVVDGVETANVRLVGLVSGKTERNTDVSFMIDDGTGRLDFIRWVNDGADSAETAAVQNGM 120
Query: 434 YIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSM 613
Y++VIGSLKGLQERKRATAF+IRP+TD+NEVTLHFIQCVRMH+EN + + GSPA+ S+M
Sbjct: 121 YVSVIGSLKGLQERKRATAFAIRPVTDYNEVTLHFIQCVRMHLENTKSQIGSPAKTYSAM 180
Query: 614 GVSFSNGFXXXXXXXXXXXXXAPVTS--GSSDTDLHTQVLNFFNEPANLESEHGVHVDEV 787
G S SNGF APV S S TDL+T+VLN F EPAN+ESEHGVH+DE+
Sbjct: 181 GSSSSNGFSEMTTPTSVKSNPAPVLSVTNGSKTDLNTEVLNVFREPANVESEHGVHIDEI 240
Query: 788 LKRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKA 895
+KR + LP+ +I AIDY D G +YSTIDE HYK+
Sbjct: 241 VKRLR-LPEAKIKVAIDYLADIGHIYSTIDESHYKS 275
>sptrnew|AAP58374|AAP58374 RPA 32kDa.
Length = 273
Score = 175 bits (443), Expect = 1e-42
Identities = 104/273 (38%), Positives = 149/273 (54%), Gaps = 6/273 (2%)
Frame = +2
Query: 92 SQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGV 271
S FS FTSSQ S P+K R + +P+TVKQ+ +A QSG D+ + F +NGV
Sbjct: 9 SSNAFSGGGFTSSQ-LNESSPAPTKSRDSQGLVPVTVKQISEASQSG--DEKSNFAINGV 65
Query: 272 EMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIG 451
++ N+ LVGMV K ER TDV F LDDGTGR+ RWVN+ DS E + N MY+ V G
Sbjct: 66 DLTNVTLVGMVYEKTERNTDVNFVLDDGTGRIKCRRWVNETFDSKEMEEVSNDMYVRVYG 125
Query: 452 SLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSN 631
+LK Q K+ AFS+RP+T+F+E+ HFI C+ H+ G+P+ +N
Sbjct: 126 NLKSFQGVKQLGAFSVRPVTNFDEIPFHFIDCIHSHLLAKVKLEGTPSTYPP------TN 179
Query: 632 GFXXXXXXXXXXXXXAPVTSG----SSD--TDLHTQVLNFFNEPANLESEHGVHVDEVLK 793
AP G S+D D V+++ + +++ E G+HV+E+ +
Sbjct: 180 SSINTPVKSALNGSQAPSNPGYTQYSTDGLEDCDKLVIDYLQQHSSMLDERGIHVEELAR 239
Query: 794 RFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYK 892
K LP +I ++ D G +YSTID+ HYK
Sbjct: 240 ELK-LPLDRIRLSVKALEDDGLVYSTIDDSHYK 271
>sptr|Q9ZQ19|Q9ZQ19 Putative replication protein A1.
Length = 279
Score = 173 bits (439), Expect = 4e-42
Identities = 91/266 (34%), Positives = 152/266 (57%), Gaps = 3/266 (1%)
Frame = +2
Query: 104 FSPSQFTSSQNAAA--DSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEM 277
FS F SSQ + A S++ +K R +P+TVKQ+ + QS +G+K ++NG+ +
Sbjct: 13 FSGGGFMSSQPSQAYESSSSTAKNRDFQGLVPVTVKQITECFQS-SGEKSG-LVINGISL 70
Query: 278 ANIRLVGMVNAKVE-RTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGS 454
N+ LVG+V K E + T+V FTLDDGTGR+D RWV++ D+ E ++++G Y+ + G
Sbjct: 71 TNVSLVGLVCDKDESKVTEVRFTLDDGTGRIDCKRWVSETFDAREMESVRDGTYVRLSGH 130
Query: 455 LKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNG 634
LK Q + + FS+RPI DFNEVT H+I+C+ + +N E + ++ S+ +F G
Sbjct: 131 LKTFQGKTQLLVFSVRPIMDFNEVTFHYIECIHFYSQNSESQRQQVGDVTQSVNTTFQGG 190
Query: 635 FXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPK 814
+ G+ +L +L++ +PA + G+H+DE+ ++ K +PK
Sbjct: 191 SNTNQATLLNPVVSSQNNDGNGRKNLDDMILDYLKQPACTARQQGIHIDEIAQQLK-IPK 249
Query: 815 KQITDAIDYNMDSGRLYSTIDEFHYK 892
++ + G +YSTIDE+H+K
Sbjct: 250 NKLEGVVQSLEGDGLIYSTIDEYHFK 275
>sptr|Q8LFJ8|Q8LFJ8 Putative replication factor A.
Length = 278
Score = 148 bits (373), Expect = 2e-34
Identities = 84/267 (31%), Positives = 147/267 (55%), Gaps = 2/267 (0%)
Frame = +2
Query: 104 FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMAN 283
F PSQ T+ A +S++ K R + +PLT+KQ+ A +G + F ++GV++
Sbjct: 17 FMPSQATTQ---AHESSSSLKNRDVRTLLPLTLKQLSSASTTGESN----FSIDGVDIKT 69
Query: 284 IRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+ +VG ++ R T V F +DDGTG +D +RW + ++ E A++ GMY+ + G LK
Sbjct: 70 VVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRLHGHLKI 129
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSS--MGVSFSNGF 637
Q ++ FS+RP+TDFNE+ HF +C+ +H+ N +L+ GS + +++ + +S
Sbjct: 130 FQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTATPRPQMPYSTMP 189
Query: 638 XXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKK 817
P S + VLN+ N+P ++ SE GVH D + + + +P
Sbjct: 190 TPAKPYQTGPSNQFPNQFNDSMHGVKQTVLNYLNQPMHIVSEAGVHCDIIARELR-IPLL 248
Query: 818 QITDAIDYNMDSGRLYSTIDEFHYKAT 898
Q+ +A++ + G +YST+DE +K+T
Sbjct: 249 QVKEALEQLSNDGCIYSTLDETCFKST 275
>sptr|Q9M8T4|Q9M8T4 Putative replication factor A.
Length = 282
Score = 145 bits (366), Expect = 1e-33
Identities = 85/279 (30%), Positives = 148/279 (53%), Gaps = 14/279 (5%)
Frame = +2
Query: 104 FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMAN 283
F PSQ T+ A +S++ K R + +PLT+KQ+ A +G + F ++GV++
Sbjct: 17 FMPSQATTQ---AHESSSSLKNRDVRTLLPLTLKQLSSASTTGESN----FSIDGVDIKT 69
Query: 284 IRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+ +VG ++ R T V F +DDGTG +D +RW + ++ E A++ GMY+ + G LK
Sbjct: 70 VVIVGRISRMENRITQVDFVVDDGTGWVDCVRWCHARQETEEMEAVKLGMYVRLHGHLKI 129
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXX 643
Q ++ FS+RP+TDFNE+ HF +C+ +H+ N +L+ GS + +++
Sbjct: 130 FQGKRSVNVFSVRPVTDFNEIVHHFTECMYVHMYNTKLRGGSITQDTATPRPQMP----- 184
Query: 644 XXXXXXXXXXXAPVTSGSSDTDL--------------HTQVLNFFNEPANLESEHGVHVD 781
P +G S+ +L VLN+ N+P ++ SE GVH D
Sbjct: 185 ---YSTMPTPAKPYQTGPSNQNLFQFPNQFNDSMHGVKQTVLNYLNQPMHIVSEAGVHCD 241
Query: 782 EVLKRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+ + + +P Q+ +A++ + G +YST+DE +K+T
Sbjct: 242 IIARELR-IPLLQVKEALEQLSNDGCIYSTLDETCFKST 279
>sw|Q62193|RFA2_MOUSE Replication protein A 32 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 2).
Length = 270
Score = 97.1 bits (240), Expect = 5e-19
Identities = 72/272 (26%), Positives = 125/272 (45%), Gaps = 8/272 (2%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ S++R A +P T+ Q++ A + F + VE++ +
Sbjct: 23 SPGGFGSPTPSQAEKK--SRVR-AQHIVPCTISQLLSATLTDE-----VFRIGDVEISQV 74
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E A + Y+ V G L+
Sbjct: 75 TIVGIIRHAEKAPTNIVYKIDDMTAPPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRS 134
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFS- 628
Q +K AF I P+ D NE T H ++ V H+ N + AG P+ + M SF+
Sbjct: 135 FQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHMMLSKPNSQASAGRPSMSNPGMSESFNF 194
Query: 629 --NGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFK 802
N F + T + QVLN E G++ ++ + +
Sbjct: 195 SGNNF----------------MPANRLTVVQNQVLNLIKACPRPE---GLNFQDLRSQLQ 235
Query: 803 LLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+P I A+D+ + G +YST+D+ H+K+T
Sbjct: 236 HMPVPSIKQAVDFLCNEGHIYSTVDDDHFKST 267
>sptr|Q99KL9|Q99KL9 Similar to replication protein A2.
Length = 270
Score = 95.5 bits (236), Expect = 1e-18
Identities = 71/269 (26%), Positives = 124/269 (46%), Gaps = 5/269 (1%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ S++R A +P T+ Q++ A + F + VE++ +
Sbjct: 23 SPGGFGSPTPSQAEKK--SRVR-AQHIVPCTISQLLSATLTDE-----VFRIGDVEISQV 74
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E A + Y+ V G L+
Sbjct: 75 TIVGIIRHAEKAPTNIVYKIDDMTAPPMDVRQWVDTDDASGENAVVPPETYVKVAGHLRS 134
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFSN 631
Q +K AF I P+ D NE T H ++ V H+ N + AG P+ S+ G+S
Sbjct: 135 FQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHMMLSKSNSQASAGRPS--MSNPGMSEPG 192
Query: 632 GFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLP 811
F + T + QVLN E G++ ++ + + +P
Sbjct: 193 NFSGNN-----------FMPANGLTVVQNQVLNLIKACPRPE---GLNFQDLRSQLQHMP 238
Query: 812 KKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
I A+D+ + G +YST+D+ H+K+T
Sbjct: 239 VPSIKQAVDFLCNEGHIYSTVDDDHFKST 267
>sw|Q63528|RFA2_RAT Replication protein A 32 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 2) (Fragment).
Length = 266
Score = 94.0 bits (232), Expect = 4e-18
Identities = 69/272 (25%), Positives = 123/272 (45%), Gaps = 8/272 (2%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ + ++ A +P T+ Q++ A + F + VE++ +
Sbjct: 19 SPGGFGSPTPSQAEKKSRAR---AQHIVPCTISQLLSATLTDE-----VFKIGDVEISQV 70
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 71 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSGENTVVPPETYVKVAGHLRS 130
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGV--SF 625
Q +K AF I P+ D NE T H ++ V H+ N + G P+ + MG +F
Sbjct: 131 FQNKKSLVAFKIIPLEDMNEFTAHILEVVNSHLMLSKANSQASVGRPSMSNPGMGEPGNF 190
Query: 626 S-NGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFK 802
S N F + T + QVLN E G++ ++ + +
Sbjct: 191 SGNNF----------------MPANGLTVVQNQVLNLIKACPRPE---GLNFQDLRSQLQ 231
Query: 803 LLPKKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
+P I A+D+ + G +YST+D+ H+K+T
Sbjct: 232 HMPVASIKQAVDFLCNEGHIYSTVDDDHFKST 263
>sw|P15927|RFA2_HUMAN Replication protein A 32 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 2).
Length = 270
Score = 89.0 bits (219), Expect = 1e-16
Identities = 66/269 (24%), Positives = 117/269 (43%), Gaps = 5/269 (1%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SP F S + A+ + ++ A +P T+ Q++ A F + VE++ +
Sbjct: 23 SPGGFGSPAPSQAEKKSRAR---AQHIVPCTISQLLSATLVDE-----VFRIGNVEISQV 74
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
+VG++ + T++ + +DD T +D +WV+ S E + Y+ V G L+
Sbjct: 75 TIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRS 134
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI----ENIELKAGSPARISSSMGVSFSN 631
Q +K AF I P+ D NE T H ++ + H+ N + AG S+ G+S +
Sbjct: 135 FQNKKSLVAFKIMPLEDMNEFTTHILEVINAHMVLSKANSQPSAGRAP--ISNPGMSEAG 192
Query: 632 GFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLP 811
F A QVLN E G++ ++ + K +
Sbjct: 193 NFGGNSFMPANGLTVA-----------QNQVLNLIKACPRPE---GLNFQDLKNQLKHMS 238
Query: 812 KKQITDAIDYNMDSGRLYSTIDEFHYKAT 898
I A+D+ + G +YST+D+ H+K+T
Sbjct: 239 VSSIKQAVDFLSNEGHIYSTVDDDHFKST 267
>sw|Q92373|RFA2_SCHPO Replication factor-A protein 2
(Single-stranded DNA-binding protein P30 subunit).
Length = 279
Score = 85.9 bits (211), Expect = 1e-15
Identities = 66/258 (25%), Positives = 118/258 (45%), Gaps = 4/258 (1%)
Frame = +2
Query: 134 NAAADSTTPS--KMRGASSTM-PLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMV 304
N S+ PS + +GA + + P+T+KQ+++A Q A F ++GVE+ + VG++
Sbjct: 30 NEYDQSSQPSVDRQQGAGNKLRPVTIKQILNASQVHAD---AEFKIDGVEVGQVTFVGVL 86
Query: 305 NAKVERTTDVTFTLDDGTGRLDFIRWVN-DASDSFETAAIQNGMYIAVIGSLKGLQERKR 481
+TT+ T+ ++DGTG ++ W + DA T Y+ V G++K +
Sbjct: 87 RNIHAQTTNTTYQIEDGTGMIEVRHWEHIDALSELAT-----DTYVRVYGNIKIFSGKIY 141
Query: 482 ATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGFXXXXXXXX 661
+ IR I D NEV HF++ + +H+ + + G S + G+
Sbjct: 142 IASQYIRTIKDHNEVHFHFLEAIAVHLHFTQKANAVNGANAPGYGTSNALGYNNISSNGA 201
Query: 662 XXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDY 841
+ S T + + P E+ GVHV ++ + + P +T D+
Sbjct: 202 ANSLEQKLAEYSLTPAQMTVMQAIHSAP---ETNEGVHVRQLAQ--SVGPGIDLTAVTDF 256
Query: 842 NMDSGRLYSTIDEFHYKA 895
G +Y+TIDE H+K+
Sbjct: 257 LQQEGIIYTTIDENHFKS 274
>sptr|Q8SXG3|Q8SXG3 RH07841p.
Length = 246
Score = 84.3 bits (207), Expect = 3e-15
Identities = 65/262 (24%), Positives = 116/262 (44%), Gaps = 2/262 (0%)
Frame = +2
Query: 119 FTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVG 298
F ++Q A + + K G +PL VKQ+VDA + + G++ A +V
Sbjct: 8 FNATQTAPTGAASNQKGEGI---VPLVVKQIVDAPEGNIE-------LFGMQYAMACVVA 57
Query: 299 MVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERK 478
+V +T +T+TL+D +GR+D W+ + D+ + + Y+ V G+ + K
Sbjct: 58 IVRNVETSSTKITYTLEDHSGRIDAHYWLEE-GDALKAPEVMVNNYVKVYGTTRSQGGSK 116
Query: 479 RATAFSIRPITDFNEVTLHFIQCV--RMHIENIELKAGSPARISSSMGVSFSNGFXXXXX 652
F + PI D NEV H ++ + R E+ + K G+ A +S G F
Sbjct: 117 TLMIFKLLPILDPNEVCTHLLEVLNARYRAEDCQSKGGAGAGAGASSGSGSIADF----- 171
Query: 653 XXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDA 832
+ + SG L + F + SE G+ E+ +F + ++T+
Sbjct: 172 ---TASQSSAIVSG-----LEPKQQAVFQAIKSNVSEEGISRKELKAKFSHISDSELTNI 223
Query: 833 IDYNMDSGRLYSTIDEFHYKAT 898
+D+ + G +YS+ID H+ T
Sbjct: 224 LDFMISEGHIYSSIDADHFICT 245
>sptr|Q9VIH1|Q9VIH1 CG9273 protein (GM04951p).
Length = 246
Score = 84.0 bits (206), Expect = 4e-15
Identities = 64/262 (24%), Positives = 116/262 (44%), Gaps = 2/262 (0%)
Frame = +2
Query: 119 FTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVG 298
F ++Q A + + K G +PL VKQ+VDA + + G++ A +V
Sbjct: 8 FNATQTAPTGAASNQKGEGI---VPLVVKQIVDAPEGNIE-------LFGMQYAMACVVA 57
Query: 299 MVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERK 478
+V +T +T+TL+D +GR+D W+ + D+ + + Y+ V G+ + K
Sbjct: 58 IVRNVETSSTKITYTLEDHSGRIDAHYWLEE-GDALKAPEVMVNNYVKVYGTTRSQGGSK 116
Query: 479 RATAFSIRPITDFNEVTLHFIQCV--RMHIENIELKAGSPARISSSMGVSFSNGFXXXXX 652
F + P+ D NEV H ++ + R E+ + K G+ A +S G F
Sbjct: 117 TLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQSKGGAGAGAGASSGSGSIADF----- 171
Query: 653 XXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDA 832
+ + SG L + F + SE G+ E+ +F + ++T+
Sbjct: 172 ---TASQSSAIVSG-----LEPKQQAVFQAIKSNVSEEGISRKELKAKFSHISDSELTNI 223
Query: 833 IDYNMDSGRLYSTIDEFHYKAT 898
+D+ + G +YS+ID H+ T
Sbjct: 224 LDFMISEGHIYSSIDADHFICT 245
>sptr|Q9DDG4|Q9DDG4 Replication protein A.
Length = 272
Score = 79.7 bits (195), Expect = 8e-14
Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 1/265 (0%)
Frame = +2
Query: 74 GKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAP 253
GK S ++ S AA+ A +P TV Q++ A Q+
Sbjct: 5 GKYGEASMAGYTQSPGGFGSPAASQGGDKKGRTRAQQIVPCTVSQLLSAVQAED-----V 59
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNG 430
F V VE+A + +VG++ + + T ++ + +DD T +D +W++ + + I G
Sbjct: 60 FKVGEVEIAQVTIVGVIRSTDKSTINIQYKVDDMTAAPMDVKQWIDTEDMGVDNSVIPPG 119
Query: 431 MYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSS 610
Y+ V G+L+ Q + AFS+R + D NEVT H ++ V H++ + K +
Sbjct: 120 SYVKVSGNLRSFQNNRSLVAFSVRVLEDMNEVTSHMLEVVNAHLQ--QSKPQNMGGDERM 177
Query: 611 MGVSFSNGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVL 790
M VS N + +G S T QVL+ L+ G+ + E+
Sbjct: 178 MPVS-HNSMNSMGTTGGYSGANMMLVNGLSAT--QNQVLSLIKSCQELQ---GISMHELK 231
Query: 791 KRFKLLPKKQITDAIDYNMDSGRLY 865
++ + I +D+ + G Y
Sbjct: 232 QKLNSMSANVIRQTVDFLSNEGHQY 256
>sptr|Q8NJM1|Q8NJM1 Possible replication factor-a protein.
Length = 274
Score = 77.8 bits (190), Expect = 3e-13
Identities = 63/262 (24%), Positives = 115/262 (43%), Gaps = 3/262 (1%)
Frame = +2
Query: 104 FSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMAN 283
F P + S D+ ++ P+TVKQ +DA Q A F ++G + A+
Sbjct: 24 FMPGEMNSPAGGKGDNNN-------ATLRPITVKQALDASQPYPE---AAFQIDGADAAS 73
Query: 284 IRLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVN-DASDSFETAAIQNGM-YIAVIGSL 457
+ +G V ++T+VT+ +DDGTG ++ +W++ +D+ ET + G V G +
Sbjct: 74 VCFIGQVRNISSQSTNVTYKIDDGTGEIEVKQWIDTQTADTMETDDGKAGTGKNQVFGKI 133
Query: 458 KGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMGVSFSNGF 637
K ++ A +RP T+ NEV H ++ +H+ G A +S + ++
Sbjct: 134 KSFGNKRYVGAHCVRPTTNLNEVHCHLLEAAAIHLFFTRGPPGGGAAGGASGAGANADAA 193
Query: 638 XXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFF-NEPANLESEHGVHVDEVLKRFKLLPK 814
P S ++ +V N EP +S G+H + + LP
Sbjct: 194 MGGANDYGTGNSNLPAMSPAA-----RRVYNLLKTEP---QSNEGLHAQLIAAKLN-LPM 244
Query: 815 KQITDAIDYNMDSGRLYSTIDE 880
+ A + + +G ++ST+DE
Sbjct: 245 PDVARAGEELLTAGVIFSTVDE 266
>sptrnew|EAA32731|EAA32731 Hypothetical protein.
Length = 284
Score = 76.6 bits (187), Expect = 7e-13
Identities = 41/132 (31%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
Frame = +2
Query: 182 STMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTG 361
S P+T+KQ++D +++ G A ++G + + +VG V + + T++T+ +DDGTG
Sbjct: 35 SLRPVTIKQLLDWEETFPG---AELAIDGHPVTQVTIVGQVRSVKPQPTNITYRIDDGTG 91
Query: 362 RLDFIRWVNDASDSFE-----TAAIQNGMYIAVIGSLKGLQERKRATAFSIRPITDFNEV 526
+D +WV+ + E I ++ V G LK L +K +A IR I DFNEV
Sbjct: 92 AIDVKKWVDSEAQGGEDGGSGAGTIAPDAFVRVWGRLKSLGGKKHVSANFIRQIEDFNEV 151
Query: 527 TLHFIQCVRMHI 562
H ++ +H+
Sbjct: 152 NYHLLEATYVHL 163
>sw|P26754|RFA2_YEAST Replication factor-A protein 2 (RF-A) (DNA
binding protein BUF1) (Replication protein A 36 kDa
subunit).
Length = 273
Score = 72.8 bits (177), Expect = 1e-11
Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 14/160 (8%)
Frame = +2
Query: 122 TSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGM 301
+ S+ + +S T +++ ++ P+T+KQ+++++Q + PF+ + E+ ++ VG+
Sbjct: 21 SESRPGSGESETNTRV---NTLTPVTIKQILESKQD---IQDGPFVSHNQELHHVCFVGV 74
Query: 302 VNAKVERTTDVTFTLDDGTGRLDFIRWVNDASD--------------SFETAAIQNGMYI 439
V + T ++ T++DGTG+++ +W DA+D S + G Y+
Sbjct: 75 VRNITDHTANIFLTIEDGTGQIEVRKWSEDANDLAAGNDDSSGKGYGSQVAQQFEIGGYV 134
Query: 440 AVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMH 559
V G+LK +K I+PI FNEV H ++ ++ H
Sbjct: 135 KVFGALKEFGGKKNIQYAVIKPIDSFNEVLTHHLEVIKCH 174
>sptr|Q8SRS2|Q8SRS2 Replication factor A protein 2 (32KDA subunit).
Length = 274
Score = 69.7 bits (169), Expect = 9e-11
Identities = 36/152 (23%), Positives = 72/152 (47%)
Frame = +2
Query: 107 SPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
+P+ S+ S+ ++ G + LT+KQ+ T + +V+ E+ N+
Sbjct: 45 NPTPMDRSEGGYIQSSPKRELLGVKTLRALTIKQIGSCDFDETS---STHLVDSAEVTNV 101
Query: 287 RLVGMVNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGL 466
+++G V + T F L+DGTG +D W ++ + + ++ + V GSL+
Sbjct: 102 QIIGWVVSSKTSATGSMFVLEDGTGSVDCTFWPGNSYEEEQCKVLEEQNLLKVNGSLRTF 161
Query: 467 QERKRATAFSIRPITDFNEVTLHFIQCVRMHI 562
++ +A + + D N VT HF+ C+ H+
Sbjct: 162 NGKRSVSASHLSAVEDSNFVTYHFLSCIYQHL 193
>sptrnew|EAA43853|EAA43853 ENSANGP00000023457 (Fragment).
Length = 254
Score = 68.6 bits (166), Expect = 2e-10
Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 1/253 (0%)
Frame = +2
Query: 134 NAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAK 313
NA A A +PL ++QV+++ G + G + A I LV ++
Sbjct: 18 NATAGGGGAGNENKAEGVLPLVIEQVLESSDGGIS-------LFGHQYAMITLVAIIRNV 70
Query: 314 VERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAF 493
+T VT+ L+D TGR+D W+ D + T +I Y V+GS++ K F
Sbjct: 71 DYSSTKVTYQLEDHTGRIDAHLWIEDDGVT-STPSIVPQSYARVVGSVRNQGGSKSIMIF 129
Query: 494 SIRPITDFNEVTLHFIQCVRMHIENIE-LKAGSPARISSSMGVSFSNGFXXXXXXXXXXX 670
I I NEVT H ++ + + E K ++ + + GF
Sbjct: 130 KIDQINSPNEVTTHLLEVLHARYKGEENSKRKVEGGFDTNANATSNGGFMES-------- 181
Query: 671 XXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMD 850
S + L+ + L + + S+ G+ E+ +F + ++ ID+
Sbjct: 182 -----DSVGASLGLNGKQLAVYKAIKSHVSDIGISRKELQAKFSHISPSEMQSIIDHMGQ 236
Query: 851 SGRLYSTIDEFHY 889
G +Y+T+D H+
Sbjct: 237 EGMIYTTVDTDHF 249
>sptrnew|EAA12428|EAA12428 ENSANGP00000018307.
Length = 247
Score = 68.6 bits (166), Expect = 2e-10
Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 1/253 (0%)
Frame = +2
Query: 134 NAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAK 313
NA A A +PL ++QV+++ G + G + A I LV ++
Sbjct: 11 NATAGGGGAGNENKAEGVLPLVIEQVLESSDGGIS-------LFGHQYAMITLVAIIRNV 63
Query: 314 VERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQERKRATAF 493
+T VT+ L+D TGR+D W+ D + T +I Y V+GS++ K F
Sbjct: 64 DYSSTKVTYQLEDHTGRIDAHLWIEDDGVT-STPSIVPQSYARVVGSVRNQGGSKSIMIF 122
Query: 494 SIRPITDFNEVTLHFIQCVRMHIENIE-LKAGSPARISSSMGVSFSNGFXXXXXXXXXXX 670
I I NEVT H ++ + + E K ++ + + GF
Sbjct: 123 KIDQINSPNEVTTHLLEVLHARYKGEENSKRKVEGGFDTNANATSNGGFMES-------- 174
Query: 671 XXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVLKRFKLLPKKQITDAIDYNMD 850
S + L+ + L + + S+ G+ E+ +F + ++ ID+
Sbjct: 175 -----DSVGASLGLNGKQLAVYKAIKSHVSDIGISRKELQAKFSHISPSEMQSIIDHMGQ 229
Query: 851 SGRLYSTIDEFHY 889
G +Y+T+D H+
Sbjct: 230 EGMIYTTVDTDHF 242
>sw|Q13156|RFA4_HUMAN Replication protein A 30 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 4).
Length = 261
Score = 56.2 bits (134), Expect = 1e-06
Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 1/215 (0%)
Frame = +2
Query: 254 FIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGR-LDFIRWVNDASDSFETAAIQNG 430
F V G+ ++ + +VG++ + + + + +DD T + ++ +W + + G
Sbjct: 64 FKVRGIIVSQVSIVGVIRGAEKASNHICYKIDDMTAKPIEARQWFGREKVK-QVTPLSVG 122
Query: 431 MYIAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSS 610
+Y+ V G LK K I + D NE T+H ++ V H+ + + + S
Sbjct: 123 VYVKVFGILKCPTGTKSLEVLKIHVLEDMNEFTVHILETVNAHMMLDKARRDTTV---ES 179
Query: 611 MGVSFSNGFXXXXXXXXXXXXXAPVTSGSSDTDLHTQVLNFFNEPANLESEHGVHVDEVL 790
+ VS S A S + +VL +E + E G + E+
Sbjct: 180 VPVSPSE------------VNDAGDNDESHRNFIQDEVLRLIHECPHQE---GKSIHELR 224
Query: 791 KRFKLLPKKQITDAIDYNMDSGRLYSTIDEFHYKA 895
+ L K I +AIDY G +Y T+D H+K+
Sbjct: 225 AQLCDLSVKAIKEAIDYLTVEGHIYPTVDREHFKS 259
>sw|Q23697|RFA2_CRIFA Replication protein A 28 kDa subunit (RP-A)
(RF-A) (Replication factor-A protein 2).
Length = 258
Score = 42.0 bits (97), Expect = 0.019
Identities = 44/184 (23%), Positives = 77/184 (41%), Gaps = 12/184 (6%)
Frame = +2
Query: 113 SQFTSSQNAAADST--TPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANI 286
SQ S+ +AAA S + R PLT+KQ+++AQ G G +V+G E+
Sbjct: 4 SQAGSNFSAAASSNGGQQQQQRRQHPIRPLTIKQMLEAQSVG----GGVMVVDGREVTQA 59
Query: 287 ----RLVGMVNAKVE------RTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMY 436
R+VG NA + + + D TG + +W+ DA + E + +
Sbjct: 60 TVVGRVVGYENANMASGGGAITAKHFGYRITDNTGMIVVRQWI-DADRAQEPIPLNT--H 116
Query: 437 IAVIGSLKGLQERKRATAFSIRPITDFNEVTLHFIQCVRMHIENIELKAGSPARISSSMG 616
+ G++ Q+ T ++ + D NE+ H + + H+ + + I S
Sbjct: 117 VRASGTVNVWQQSPIVTG-TVVSMADSNEMNYHMLDAILTHLRLTQGNKRAAGNIGSGAS 175
Query: 617 VSFS 628
V S
Sbjct: 176 VQNS 179
>sptr|Q95Y97|Q95Y97 Hypothetical 32.0 kDa protein.
Length = 288
Score = 42.0 bits (97), Expect = 0.019
Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 16/272 (5%)
Frame = +2
Query: 113 SQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRL 292
S F + + + +TT G +P+T+ +++ S DK ++V A +
Sbjct: 20 SSFMTDRKPDSKATT----LGERLPVPVTISNLIE-HFSAQDDK---YVVGTFRFATVLT 71
Query: 293 VGMVNAKVERTTDVTFTL-DDGTGRLDF--IRWVNDASDSFETAAIQNGMYIAVIGSLKG 463
VG+V + T T+ L D +++ +++ N+ S +F+ ++I G + IG LKG
Sbjct: 72 VGIVKDISQDGTTYTYDLCDPNNTEMEYRTLKYDNEGS-TFDHSSIVEGTRVRAIGKLKG 130
Query: 464 LQERKRATAFSIRPITDFNEVTLHFIQCVRMHI---ENIELKA---------GSPARISS 607
F+I P+ D + T+ ++ + +N+ K G A S
Sbjct: 131 FDGNNTIMLFNITPVEDDKDFTIFELEAEAARLFFQKNVSEKLKSVDSDGFQGMLAPPKS 190
Query: 608 SMGVSFSNGFXXXXXXXXXXXXXAPVTSGSSDTD-LHTQVLNFFNEPANLESEHGVHVDE 784
M + V +G++ D L ++ + G HV
Sbjct: 191 RMSQTSHQSSQGSDTKERLYAQPQKVMTGANQGDVLRERITAVLMAVPEGSRDEGRHVSW 250
Query: 785 VLKRFKLLPKKQITDAIDYNMDSGRLYSTIDE 880
+ ++ + + + +++G +Y+T+DE
Sbjct: 251 IAEQIQETNISIVRKCVGEMVENGLVYTTVDE 282
>sptr|Q9LMK5|Q9LMK5 F10K1.17 (Hypothetical protein).
Length = 160
Score = 36.2 bits (82), Expect = 1.0
Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 21/147 (14%)
Frame = +2
Query: 179 SSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGT 358
S+ L + + QS T + + ++ G ++ + +VG + ++ + F +DDGT
Sbjct: 7 STHAKLVARDIQRLTQSPT-ESNSFSLLGGACVSRVEIVGTIVSRDLTPKFLKFGVDDGT 65
Query: 359 GRLDFIRWVNDASDSF------------------ETAAIQNGMYIAV---IGSLKGLQER 475
G + + W+N + S+ + A I+ G V +GS +G+ +
Sbjct: 66 GCVTCVMWLNQLTSSYFSRWDPATILLLASAARKQAAQIRIGAVARVRGRVGSYRGVMQI 125
Query: 476 KRATAFSIRPITDFNEVTLHFIQCVRM 556
A + R D N LH+++C+++
Sbjct: 126 TANVAVAER---DPNAEILHWLECLKL 149
>sptrnew|AAP37459|AAP37459 Replication protein A2.
Length = 362
Score = 35.0 bits (79), Expect = 2.3
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +2
Query: 338 FTLDDGTGRLDFIRWVNDASDSFETA----AIQNGMYIAVIGSLKGLQERKRATAFSIRP 505
F LDDG+G L I W+ D + + +I G ++ + G L + AF +RP
Sbjct: 100 FYLDDGSG-LILIDWLVDNTGTKYKQDLVNSIHEGCFVKIFGELTLMVSEPSVRAFVVRP 158
Query: 506 ITDFNEVTLHFI 541
+ +E++LH I
Sbjct: 159 LVCTDEISLHDI 170
>sptr|Q9HP56|Q9HP56 Vng1794c.
Length = 694
Score = 35.0 bits (79), Expect = 2.3
Identities = 33/120 (27%), Positives = 50/120 (41%)
Frame = +2
Query: 20 DPPICAPASLFAAPPQVTGKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLT 199
DP A AA G ++ +SQ+D+ T+S N AD G +T+
Sbjct: 198 DPFSAAEQDALAAFAADGGLVVLMSQSDYKNYDATASLNDLAD--------GIDTTIRFN 249
Query: 200 VKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGMVNAKVERTTDVTFTLDDGTGRLDFIR 379
QV D Q + GA F + ++ A+ + T DVT T D+ T +D +R
Sbjct: 250 DTQVTDDQHNA----GAAFAPTTATFPSDDYASLLAARTDGTDDVTITADE-TYTVDVVR 304
>sptr|Q9H668|Q9H668 Hypothetical protein FLJ22559.
Length = 368
Score = 33.9 bits (76), Expect = 5.2
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 4/117 (3%)
Frame = +2
Query: 134 NAAADSTTPSKMRGASSTM----PLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLVGM 301
++ + TPS + G L ++ ++D ++S F+ NG + + ++G
Sbjct: 5 SSRCEEETPSLLWGLDPVFLAFAKLYIRDILDMKESR--QVPGVFLYNGHPIKQVDVLGT 62
Query: 302 VNAKVERTTDVTFTLDDGTGRLDFIRWVNDASDSFETAAIQNGMYIAVIGSLKGLQE 472
V ER ++ +DD TG ++ I W ++S +AA +++ LK LQE
Sbjct: 63 VIGVRERDAFYSYGVDDSTGVINCICWKKLNTESV-SAAPSAARELSLTSQLKKLQE 118
>sptr|O01505|O01505 Hypothetical 135.4 kDa protein.
Length = 1239
Score = 33.5 bits (75), Expect = 6.8
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 50 FAAPPQVTGKMMPLSQTDFSPSQFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQ- 226
FA PP +GK+ P Q S + SS + + S TP +G S + P V
Sbjct: 810 FAPPPVSSGKVHPQQQQQGSFHRSDSSASVYSGSHTPFGQQGPSQSEPTAVPPGPQQNNP 869
Query: 227 SGTGDKGAPFIVN 265
G+GD G IV+
Sbjct: 870 GGSGDIGEKAIVD 882
>sptr|Q8VB53|Q8VB53 Wsv143.
Length = 2313
Score = 33.1 bits (74), Expect = 8.9
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Frame = +2
Query: 116 QFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLV 295
Q Q A+A ST P S+T P+T QV + T +K A IV + +AN L
Sbjct: 1253 QQQQQQAASASSTNPPPPSTPSTTPPVTSMQVCELDDQRTLEKAA--IVEAITLANAVLQ 1310
Query: 296 GMVNAKVERTT---DVTFTLDDG---------------TGRLDFIRWVNDASDSFE 409
+A T ++ L++G TG D +W+++++ E
Sbjct: 1311 TTKSASAPSTAAEREIALKLENGKTSIRMEKVDLSSGATGVSDQQKWIDESTSKQE 1366
>sptr|Q91LF6|Q91LF6 ORF84.
Length = 2314
Score = 33.1 bits (74), Expect = 8.9
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 18/116 (15%)
Frame = +2
Query: 116 QFTSSQNAAADSTTPSKMRGASSTMPLTVKQVVDAQQSGTGDKGAPFIVNGVEMANIRLV 295
Q Q A+A ST P S+T P+T QV + T +K A IV + +AN L
Sbjct: 1254 QQQQQQAASASSTNPPPPSTPSTTPPVTSMQVCELDDQRTLEKAA--IVEAITLANAVLQ 1311
Query: 296 GMVNAKVERTT---DVTFTLDDG---------------TGRLDFIRWVNDASDSFE 409
+A T ++ L++G TG D +W+++++ E
Sbjct: 1312 TTKSASAPSTAAEREIALKLENGKTSIRMEKVDLSSGATGVSDQQKWIDESTSKQE 1367
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 839,098,506
Number of Sequences: 1272877
Number of extensions: 16690313
Number of successful extensions: 45382
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45296
length of database: 406,886,216
effective HSP length: 125
effective length of database: 247,776,591
effective search space used: 74085200709
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)