BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.76
(854 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q9AR09|Q9AR09 Ubiquitin fused to ribosomal protein L40. 258 7e-68
sptr|Q9BX98|Q9BX98 Ubiquitin A-52 residue ribosomal protein fusi... 239 3e-62
sptrnew|AAH54413|AAH54413 Uba52 protein. 239 3e-62
sptr|O42388|O42388 Ubiquitin-ribosomal protein fusion protein. 239 3e-62
sptr|Q9DF54|Q9DF54 Ubiquitin fusion protein. 239 3e-62
sptr|Q9Z0H9|Q9Z0H9 Ubiquitin/60S ribosomal fusion protein (Ubiqu... 239 3e-62
sptr|Q95260|Q95260 Ubiquitin/ribosomal fusion protein. 239 3e-62
sptr|Q9UPK7|Q9UPK7 Ubiquitin-52 amino acid fusion protein. 239 3e-62
sptr|Q9PT09|Q9PT09 Ubiquitin. 239 3e-62
sptrnew|EAA12215|EAA12215 AgCP11398 (Fragment). 238 1e-61
sptr|Q95NR0|Q95NR0 Anopheles stephensi ubiquitin (Ubiquitin-52-a... 238 1e-61
sptr|Q962Y0|Q962Y0 Ubiquitin. 238 1e-61
sptr|Q9XSV1|Q9XSV1 Ubiquitin-ribosomal protein L40 fusion protein. 237 1e-61
sptr|Q93116|Q93116 Ub52. 237 2e-61
sptr|Q90YS8|Q90YS8 Ribosomal protein L40. 236 3e-61
sptr|Q8S5Y3|Q8S5Y3 Putative ubiquitin / ribosomal protein CEP52. 236 4e-61
sptr|O13697|O13697 Ubiquitin. 236 4e-61
sptr|O59962|O59962 Ubiquitin fusion protein. 234 9e-61
sptr|Q966Q8|Q966Q8 Ubiquitin 1 (Ubiquitin/fusion protein). 234 1e-60
sptr|Q962S3|Q962S3 Ribosomal protein L40. 234 1e-60
sptr|Q9Y854|Q9Y854 Ubiquitin fusion protein. 234 1e-60
sptr|Q9XXZ4|Q9XXZ4 Ubiquitin/53AA fusion protein. 233 2e-60
sptr|Q8IS65|Q8IS65 Ubiquitin-53aa extension protein. 232 6e-60
sptr|Q9BH32|Q9BH32 Ubiquitin. 231 7e-60
sptrnew|EAA32676|EAA32676 Hypothetical protein ( (AF056623) ubiq... 230 2e-59
sptr|Q8ID50|Q8ID50 Ubiquitin/ribosomal fusion protein uba52 homo... 227 1e-58
sptrnew|AAP34636|AAP34636 Ubiquitin/ribosomal protein L40 fusion. 226 2e-58
sptrnew|AAP34635|AAP34635 Ubiquitin/ribosomal protein L40 fusion. 226 2e-58
sptr|O96462|O96462 Ubiquitin/ribosomal fusion protein. 226 3e-58
sptr|Q8T6A1|Q8T6A1 Ubiquitin/ribosomal L40 fusion protein (Fragm... 222 4e-57
>sptr|Q9AR09|Q9AR09 Ubiquitin fused to ribosomal protein L40.
Length = 129
Score = 258 bits (659), Expect = 7e-68
Identities = 128/129 (99%), Positives = 128/129 (99%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
Query: 379 LRAKKKIKN 353
LR KKKIKN
Sbjct: 121 LRPKKKIKN 129
>sptr|Q9BX98|Q9BX98 Ubiquitin A-52 residue ribosomal protein fusion
product 1 (Fragment).
Length = 141
Score = 239 bits (611), Expect = 3e-62
Identities = 117/128 (91%), Positives = 123/128 (96%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 14 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 73
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N
Sbjct: 74 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 133
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 134 LRPKKKVK 141
>sptrnew|AAH54413|AAH54413 Uba52 protein.
Length = 128
Score = 239 bits (611), Expect = 3e-62
Identities = 117/128 (91%), Positives = 123/128 (96%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKVK 128
>sptr|O42388|O42388 Ubiquitin-ribosomal protein fusion protein.
Length = 128
Score = 239 bits (611), Expect = 3e-62
Identities = 117/128 (91%), Positives = 123/128 (96%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE +DTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPNDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKVK 128
>sptr|Q9DF54|Q9DF54 Ubiquitin fusion protein.
Length = 128
Score = 239 bits (611), Expect = 3e-62
Identities = 117/128 (91%), Positives = 123/128 (96%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKVK 128
>sptr|Q9Z0H9|Q9Z0H9 Ubiquitin/60S ribosomal fusion protein
(Ubiquitin A-52 residue ribosomal protein fusion product
1).
Length = 128
Score = 239 bits (611), Expect = 3e-62
Identities = 117/128 (91%), Positives = 123/128 (96%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKVK 128
>sptr|Q95260|Q95260 Ubiquitin/ribosomal fusion protein.
Length = 128
Score = 239 bits (611), Expect = 3e-62
Identities = 117/128 (91%), Positives = 123/128 (96%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKVK 128
>sptr|Q9UPK7|Q9UPK7 Ubiquitin-52 amino acid fusion protein.
Length = 128
Score = 239 bits (611), Expect = 3e-62
Identities = 117/128 (91%), Positives = 123/128 (96%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKVK 128
>sptr|Q9PT09|Q9PT09 Ubiquitin.
Length = 128
Score = 239 bits (610), Expect = 3e-62
Identities = 117/128 (91%), Positives = 123/128 (96%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKLK 128
>sptrnew|EAA12215|EAA12215 AgCP11398 (Fragment).
Length = 139
Score = 238 bits (606), Expect = 1e-61
Identities = 116/128 (90%), Positives = 122/128 (95%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 71
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA+KYN DKMICRKCYARLHPRA NCRKKKCGH+N
Sbjct: 72 IQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNN 131
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 132 LRPKKKLK 139
>sptr|Q95NR0|Q95NR0 Anopheles stephensi ubiquitin
(Ubiquitin-52-amino-acid fusion protein) (RE10554p).
Length = 128
Score = 238 bits (606), Expect = 1e-61
Identities = 116/128 (90%), Positives = 122/128 (95%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA+KYN DKMICRKCYARLHPRA NCRKKKCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNN 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKLK 128
>sptr|Q962Y0|Q962Y0 Ubiquitin.
Length = 128
Score = 238 bits (606), Expect = 1e-61
Identities = 116/128 (90%), Positives = 122/128 (95%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA+KYN DKMICRKCYARLHPRA NCRKKKCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRMLAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTNN 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKLK 128
>sptr|Q9XSV1|Q9XSV1 Ubiquitin-ribosomal protein L40 fusion protein.
Length = 128
Score = 237 bits (605), Expect = 1e-61
Identities = 116/128 (90%), Positives = 122/128 (95%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA+KYN DKMICR CYARLHPRAVNCRKKKCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRXCYARLHPRAVNCRKKKCGHTNN 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKVK 128
>sptr|Q93116|Q93116 Ub52.
Length = 129
Score = 237 bits (604), Expect = 2e-61
Identities = 115/128 (89%), Positives = 122/128 (95%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SD+I+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDSIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGG+IEPSL+ LA+KYN DKMICRKCYARLHPRAVNCRKKKCGHSN
Sbjct: 61 IQKESTLHLVLRLRGGVIEPSLRLLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHSNN 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKLK 128
>sptr|Q90YS8|Q90YS8 Ribosomal protein L40.
Length = 128
Score = 236 bits (602), Expect = 3e-61
Identities = 115/128 (89%), Positives = 122/128 (95%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKVKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA+KYN +KMICRKCYARLHPRAVNCRKKKCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCEKMICRKCYARLHPRAVNCRKKKCGHTNN 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKLK 128
>sptr|Q8S5Y3|Q8S5Y3 Putative ubiquitin / ribosomal protein CEP52.
Length = 171
Score = 236 bits (601), Expect = 4e-61
Identities = 127/171 (74%), Positives = 127/171 (74%), Gaps = 42/171 (24%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICR----------------------- 449
IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICR
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRNFKDKSLRSPLSGPEAFFSEEMQ 120
Query: 448 -------------------KCYARLHPRAVNCRKKKCGHSNQLRAKKKIKN 353
CYARLHPRAVNCRKKKCGHSNQLR KKKIKN
Sbjct: 121 DKLWGPLDMRLLPVDSRIFSCYARLHPRAVNCRKKKCGHSNQLRPKKKIKN 171
>sptr|O13697|O13697 Ubiquitin.
Length = 128
Score = 236 bits (601), Expect = 4e-61
Identities = 116/128 (90%), Positives = 122/128 (95%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ALA KYN +K ICRKCYARL PRA NCRKKKCGH+NQ
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKLK 128
>sptr|O59962|O59962 Ubiquitin fusion protein.
Length = 128
Score = 234 bits (598), Expect = 9e-61
Identities = 115/128 (89%), Positives = 122/128 (95%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ALA K+N DK ICRKCYARL PRA NCRK+KCGH+NQ
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKFNCDKQICRKCYARLPPRATNCRKRKCGHTNQ 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKLK 128
>sptr|Q966Q8|Q966Q8 Ubiquitin 1 (Ubiquitin/fusion protein).
Length = 128
Score = 234 bits (597), Expect = 1e-60
Identities = 114/128 (89%), Positives = 122/128 (95%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVESSDTI++VK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIESVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSLQ LA+KYN +KMICRKCYARLHPRA NCRKKKCGHS+
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLQVLAKKYNCEKMICRKCYARLHPRAKNCRKKKCGHSSN 120
Query: 379 LRAKKKIK 356
+R KKK+K
Sbjct: 121 VRPKKKLK 128
>sptr|Q962S3|Q962S3 Ribosomal protein L40.
Length = 129
Score = 234 bits (596), Expect = 1e-60
Identities = 114/129 (88%), Positives = 121/129 (93%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGG IEPSL+ LA KYN DKMICRKCYARLHPRA NCRK KCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCDKMICRKCYARLHPRATNCRKTKCGHTNN 120
Query: 379 LRAKKKIKN 353
LR KKK+K+
Sbjct: 121 LRPKKKLKD 129
>sptr|Q9Y854|Q9Y854 Ubiquitin fusion protein.
Length = 128
Score = 234 bits (596), Expect = 1e-60
Identities = 114/128 (89%), Positives = 122/128 (95%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ALA KYN +K +CRKCYARL PRA NCRK+KCGH+NQ
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKSVCRKCYARLPPRATNCRKRKCGHTNQ 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKLK 128
>sptr|Q9XXZ4|Q9XXZ4 Ubiquitin/53AA fusion protein.
Length = 129
Score = 233 bits (594), Expect = 2e-60
Identities = 114/129 (88%), Positives = 121/129 (93%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGG IEPSL+ LA KYN +KMICRKCYARLHPRA NCRK KCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 120
Query: 379 LRAKKKIKN 353
LR KKKIK+
Sbjct: 121 LRPKKKIKD 129
>sptr|Q8IS65|Q8IS65 Ubiquitin-53aa extension protein.
Length = 129
Score = 232 bits (591), Expect = 6e-60
Identities = 113/129 (87%), Positives = 120/129 (93%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGK ITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKAITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGG IEPSL+ LA KYN DKMICRKCYARLHPRA NCRK KCGH+N
Sbjct: 61 IQKESTLHLVLRLRGGTIEPSLRILAMKYNCDKMICRKCYARLHPRATNCRKTKCGHTNN 120
Query: 379 LRAKKKIKN 353
LR KKK+K+
Sbjct: 121 LRPKKKLKD 129
>sptr|Q9BH32|Q9BH32 Ubiquitin.
Length = 128
Score = 231 bits (590), Expect = 7e-60
Identities = 112/128 (87%), Positives = 121/128 (94%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEPSL+ LA K+N DKMICRKCYARLHPRA NCRK+KCGH++
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLRILASKFNCDKMICRKCYARLHPRATNCRKRKCGHTSN 120
Query: 379 LRAKKKIK 356
+R KKK+K
Sbjct: 121 IRPKKKLK 128
>sptrnew|EAA32676|EAA32676 Hypothetical protein ( (AF056623)
ubiquitin fusion protein.
Length = 129
Score = 230 bits (587), Expect = 2e-59
Identities = 113/125 (90%), Positives = 119/125 (95%)
Frame = -2
Query: 730 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 551
FVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQK
Sbjct: 5 FVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 64
Query: 550 ESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRA 371
ESTLHLVLRLRGGIIEPSL+ALA K+N DKMICRKCYARL PRA NCRK+KCGH+NQLR
Sbjct: 65 ESTLHLVLRLRGGIIEPSLKALASKFNCDKMICRKCYARLPPRATNCRKRKCGHTNQLRP 124
Query: 370 KKKIK 356
KKK+K
Sbjct: 125 KKKLK 129
>sptr|Q8ID50|Q8ID50 Ubiquitin/ribosomal fusion protein uba52
homologue, putative.
Length = 128
Score = 227 bits (579), Expect = 1e-58
Identities = 111/128 (86%), Positives = 118/128 (92%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGG IEPSL LA+KYN K+ICRKCYARLHPRA NCR KKCG +NQ
Sbjct: 61 IQKESTLHLVLRLRGGAIEPSLAQLAQKYNCQKLICRKCYARLHPRATNCRNKKCGRTNQ 120
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 121 LRPKKKLK 128
>sptrnew|AAP34636|AAP34636 Ubiquitin/ribosomal protein L40 fusion.
Length = 130
Score = 226 bits (577), Expect = 2e-58
Identities = 109/128 (85%), Positives = 118/128 (92%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITL+V+SSDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 3 MQIFVKTLTGKTITLDVDSSDTINTVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 62
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGG+IEP+LQ LARKYN K +CRKCY RLHPRA+NCRKKKCG + Q
Sbjct: 63 IQKESTLHLVLRLRGGVIEPALQELARKYNCHKKVCRKCYVRLHPRAINCRKKKCGRTTQ 122
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 123 LRVKKKLK 130
>sptrnew|AAP34635|AAP34635 Ubiquitin/ribosomal protein L40 fusion.
Length = 130
Score = 226 bits (577), Expect = 2e-58
Identities = 109/128 (85%), Positives = 118/128 (92%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITL+V+SSDTI+ VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 3 MQIFVKTLTGKTITLDVDSSDTINTVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 62
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGG+IEP+LQ LARKYN K +CRKCY RLHPRA+NCRKKKCG + Q
Sbjct: 63 IQKESTLHLVLRLRGGVIEPALQELARKYNCHKKVCRKCYVRLHPRAINCRKKKCGRTTQ 122
Query: 379 LRAKKKIK 356
LR KKK+K
Sbjct: 123 LRVKKKLK 130
>sptr|O96462|O96462 Ubiquitin/ribosomal fusion protein.
Length = 128
Score = 226 bits (576), Expect = 3e-58
Identities = 108/128 (84%), Positives = 122/128 (95%)
Frame = -2
Query: 739 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 560
MQIFVKTLTGKTITLEVE +DTI+ VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPADTIEAVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 559 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 380
IQKESTLHLVLRLRGGIIEP+L+ALA+KYN +KMICRKCYARLHP+A NCRK+KCGH++
Sbjct: 61 IQKESTLHLVLRLRGGIIEPTLKALAQKYNCEKMICRKCYARLHPKATNCRKRKCGHTSN 120
Query: 379 LRAKKKIK 356
+R KKK++
Sbjct: 121 VRPKKKLR 128
>sptr|Q8T6A1|Q8T6A1 Ubiquitin/ribosomal L40 fusion protein
(Fragment).
Length = 123
Score = 222 bits (566), Expect = 4e-57
Identities = 107/123 (86%), Positives = 116/123 (94%)
Frame = -2
Query: 724 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 545
KTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKES
Sbjct: 1 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 60
Query: 544 TLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRAKK 365
TLHLVLRLRGGIIEPSL+ LA K+N DKMICRKCYARLHPRA NCRK+KCGH++ +R KK
Sbjct: 61 TLHLVLRLRGGIIEPSLRILASKFNCDKMICRKCYARLHPRATNCRKRKCGHTSNIRPKK 120
Query: 364 KIK 356
K+K
Sbjct: 121 KLK 123
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,327,375
Number of Sequences: 1272877
Number of extensions: 12217799
Number of successful extensions: 35160
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34805
length of database: 406,886,216
effective HSP length: 121
effective length of database: 252,868,099
effective search space used: 41217500137
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)