BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.645
(1154 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sw|P49397|RS3A_ORYSA 40S ribosomal protein S3a (CYC07 protein). 438 e-122
sptr|O65108|O65108 S-phase-specific ribosomal protein (Ribosomal... 436 e-121
sptr|Q9MBB3|Q9MBB3 Cyc07 (Ribosomal protein S3A). 411 e-113
sptr|Q8GTE3|Q8GTE3 Ribosomal protein S3a. 405 e-112
sw|P33444|RS3A_CATRO 40S ribosomal protein S3a (CYC07 protein). 400 e-110
sw|P49198|RS3A_HELAN 40S ribosomal protein S3a. 399 e-110
sw|Q42262|RS3A_ARATH 40S ribosomal protein S3a. 394 e-108
sptrnew|AAL32578|AAL32578 Putative S-phase-specific ribosomal pr... 394 e-108
sptr|Q9CAV0|Q9CAV0 Putative 40S ribosomal protein S3A (S phase s... 394 e-108
sw|P49396|RS3A_BRARA 40S ribosomal protein S3a (S phase specific... 385 e-106
sptr|P93765|P93765 Cyc07 protein (Ribosomal protein S3A). 384 e-105
sptrnew|AAP80855|AAP80855 Cyc07. 362 6e-99
sw|Q9XEG7|RS3A_TORRU 40S ribosomal protein S3a. 319 4e-86
sw|P49241|RS3A_HUMAN 40S ribosomal protein S3a. 315 8e-85
sw|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transformati... 315 1e-84
sw|P97351|RS3A_MOUSE 40S ribosomal protein S3a. 315 1e-84
sptrnew|AAH39659|AAH39659 Ribosomal protein S3a. 315 1e-84
sptrnew|BAC40152|BAC40152 2 days neonate thymus thymic cells cDN... 315 1e-84
sptrnew|BAC34341|BAC34341 2 days neonate thymus thymic cells cDN... 315 1e-84
sptrnew|BAB28176|BAB28176 11 days embryo whole body cDNA, RIKEN ... 315 1e-84
sptrnew|BAB27055|BAB27055 ES cells cDNA, RIKEN full-length enric... 315 1e-84
sptr|Q9D1S3|Q9D1S3 Rps3a protein (Ribosomal protein S3A). 314 2e-84
sw|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos transforma... 313 2e-84
sw|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a). 313 4e-84
sptr|Q98TX2|Q98TX2 Ribosomal protein S3a. 312 5e-84
sptr|Q801S3|Q801S3 Similar to ribosomal protein S3a. 312 7e-84
sptr|Q90YS1|Q90YS1 40S ribosomal protein S3a (Fragment). 311 1e-83
sptr|Q871N9|Q871N9 Probable ribosomal protein 10, cytosolic. 306 3e-82
sw|P40910|RS3A_CANAL 40S ribosomal protein S3aE (S1). 301 9e-81
sptrnew|EAA26738|EAA26738 Hypothetical protein. 301 1e-80
>sw|P49397|RS3A_ORYSA 40S ribosomal protein S3a (CYC07 protein).
Length = 261
Score = 438 bits (1126), Expect = e-122
Identities = 223/244 (91%), Positives = 234/244 (95%), Gaps = 3/244 (1%)
Frame = -3
Query: 996 TVDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQ 817
TVDPF+KKDWYDIKAPSVF+VRNIGKTLVSRTQGT+IAS+GLKHRVFEV LADLQ DEDQ
Sbjct: 19 TVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ 78
Query: 816 AYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC 637
AYRKIRLRAEDVQG+NVLTNFWGM+FTTDKLRSLVKKWQTLIEAHVDVKTTD YMLRLFC
Sbjct: 79 AYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFC 138
Query: 636 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEK 457
IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIM NQAS+CDLKELVSKFIPEVIGKEIEK
Sbjct: 139 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEK 198
Query: 456 STSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLERPVEGDEAM--QEV 286
+TSSIFPLQNVF+RKVKILKAPKFDLGKLMEVHGDY KED+G KL+RP E DEAM QEV
Sbjct: 199 ATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAE-DEAMAGQEV 257
Query: 285 AAAE 274
AAAE
Sbjct: 258 AAAE 261
>sptr|O65108|O65108 S-phase-specific ribosomal protein (Ribosomal
protein S3A).
Length = 261
Score = 436 bits (1122), Expect = e-121
Identities = 219/242 (90%), Positives = 231/242 (95%), Gaps = 1/242 (0%)
Frame = -3
Query: 996 TVDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQ 817
TVDPFSKKDWYDIKAP+VFSVRNIGKTLVSRTQGT+IAS+GLKHRVFEV LADL+ DEDQ
Sbjct: 20 TVDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLRNDEDQ 79
Query: 816 AYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC 637
AYRK+RLRAEDVQGRNVLTNFWGM+FTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC
Sbjct: 80 AYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC 139
Query: 636 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEK 457
IGFTKRRPNQVKRTCYAQ ++ + RRKMVEIM NQASTCDLKELVSKFIPEVIGKEIEK
Sbjct: 140 IGFTKRRPNQVKRTCYAQVARSGRSRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEK 199
Query: 456 STSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLERPVEGDEAMQ-EVAA 280
STSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDVG+KL+RP E DEA+ EVAA
Sbjct: 200 STSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDVGMKLDRPAETDEAVAGEVAA 259
Query: 279 AE 274
AE
Sbjct: 260 AE 261
>sptr|Q9MBB3|Q9MBB3 Cyc07 (Ribosomal protein S3A).
Length = 261
Score = 411 bits (1056), Expect = e-113
Identities = 199/227 (87%), Positives = 219/227 (96%)
Frame = -3
Query: 990 DPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQAY 811
DPF+KKDWYDIKAP+VF +N+GKTLVSRTQGT+IAS+GLKHRVFEVCLADLQGDEDQAY
Sbjct: 22 DPFAKKDWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEGLKHRVFEVCLADLQGDEDQAY 81
Query: 810 RKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIG 631
RKIRLRAEDVQG+NVLTNF+GM+FTTDKLRSLV+KWQTLIEAHVDVKTTD+Y LR+FCIG
Sbjct: 82 RKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIG 141
Query: 630 FTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKST 451
FTK+R NQ KRTCYAQ+SQIRQIRRKMVEIM NQAS+CDLKELV+KFIPE IG+EIEK+T
Sbjct: 142 FTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKAT 201
Query: 450 SSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLERPVE 310
SSIFPLQNVFIRKVKILKAPKFD+GKLMEVHGDY EDVGVKLERP+E
Sbjct: 202 SSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLERPIE 248
>sptr|Q8GTE3|Q8GTE3 Ribosomal protein S3a.
Length = 261
Score = 405 bits (1040), Expect = e-112
Identities = 195/227 (85%), Positives = 216/227 (95%)
Frame = -3
Query: 990 DPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQAY 811
DPFSKKDWYDIKAPSVF V+N+GKTLVSRTQGT+IAS+GLKHRVFE+ LADLQGDED A+
Sbjct: 22 DPFSKKDWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQGDEDNAF 81
Query: 810 RKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIG 631
RKIRLRAEDVQG+NVLTNF+GM+FTTDKLRSLV+KWQTLIEAHVDVKTTDNY LR+FCIG
Sbjct: 82 RKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIG 141
Query: 630 FTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKST 451
FTKRR NQVKRTCYAQ+SQIRQIRRKM EIM+NQA++CDLKELV KFIPE+IGKEIEK+T
Sbjct: 142 FTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKAT 201
Query: 450 SSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLERPVE 310
SSI+PLQNVFIRKVKILK+PKFDLGKLMEVHGDY EDVG K+E P +
Sbjct: 202 SSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVGTKVESPAD 248
>sw|P33444|RS3A_CATRO 40S ribosomal protein S3a (CYC07 protein).
Length = 259
Score = 400 bits (1027), Expect = e-110
Identities = 192/234 (82%), Positives = 219/234 (93%)
Frame = -3
Query: 990 DPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQAY 811
DPF+KKDWYDIKAPSVFSVRN+GKTLV+RTQGT+IAS+GL+HRVFE+ LADLQGDED ++
Sbjct: 21 DPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLEHRVFEISLADLQGDEDHSF 80
Query: 810 RKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIG 631
RKIRLRAED+QG+NVLTNFWGM+FTTDKLRSLV+KWQ+LIEAHVDVKTTD+Y LR+FCIG
Sbjct: 81 RKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFCIG 140
Query: 630 FTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKST 451
FTK+R NQ KRTCYAQ+SQIRQIRRKM EIM+NQA +CDLK+LV KFIPE IG+EIEK+T
Sbjct: 141 FTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKAT 200
Query: 450 SSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLERPVEGDEAMQE 289
SSI+PLQNVFIRKVKILKAPKFDLGKLMEVHGDY ED+G KL+RP E EA+ E
Sbjct: 201 SSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAE--EAVAE 252
>sw|P49198|RS3A_HELAN 40S ribosomal protein S3a.
Length = 259
Score = 399 bits (1025), Expect = e-110
Identities = 195/239 (81%), Positives = 217/239 (90%), Gaps = 2/239 (0%)
Frame = -3
Query: 990 DPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQAY 811
DPFSKKDWYDIKAPS+F RN+GKTLV+RTQGT+IAS+GLKHRVFEV LADLQ DED +Y
Sbjct: 21 DPFSKKDWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDHSY 80
Query: 810 RKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIG 631
RKIRLRAEDVQG+NVLTNFWGM+ TTDKLRSLVKKWQ+LIEAHVDVKTTDN+ LR+FCIG
Sbjct: 81 RKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIG 140
Query: 630 FTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKST 451
FTK+R NQVKRTCYAQ+SQI+QIRRKM EIM+ QA TCDLKELV KFIPE IG+EIEK+T
Sbjct: 141 FTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKAT 200
Query: 450 SSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLERPVE--GDEAMQEVAA 280
SSI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDY EDVGVKL+RP E EA + + A
Sbjct: 201 SSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPAEEAAPEATEVIGA 259
>sw|Q42262|RS3A_ARATH 40S ribosomal protein S3a.
Length = 261
Score = 394 bits (1012), Expect = e-108
Identities = 196/236 (83%), Positives = 213/236 (90%), Gaps = 1/236 (0%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP F+ RN+GKTLVSRTQGT+IAS+GLKHRVFEV LADLQ DED A
Sbjct: 20 VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNA 79
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
YRKIRLRAEDVQGRNVLT FWGM+FTTDKLRSLVKKWQTLIEAHVDVKTTD Y LR+FCI
Sbjct: 80 YRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCI 139
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
FTKRR NQVKRTCYAQ+SQIRQIRRKM EIM+ +AS+CDLKELV+KFIPE IG+EIEK+
Sbjct: 140 AFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKA 199
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLERPVEGDEAMQE 289
T I+PLQNVFIRKVKILKAPKFDLGKLMEVHGDY EDVGVK++RP DE M E
Sbjct: 200 TQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRP--ADETMVE 253
>sptrnew|AAL32578|AAL32578 Putative S-phase-specific ribosomal
protein.
Length = 262
Score = 394 bits (1012), Expect = e-108
Identities = 196/236 (83%), Positives = 213/236 (90%), Gaps = 1/236 (0%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP F+ RN+GKTLVSRTQGT+IAS+GLKHRVFEV LADLQ DED A
Sbjct: 21 VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNA 80
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
YRKIRLRAEDVQGRNVLT FWGM+FTTDKLRSLVKKWQTLIEAHVDVKTTD Y LR+FCI
Sbjct: 81 YRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCI 140
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
FTKRR NQVKRTCYAQ+SQIRQIRRKM EIM+ +AS+CDLKELV+KFIPE IG+EIEK+
Sbjct: 141 AFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKA 200
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLERPVEGDEAMQE 289
T I+PLQNVFIRKVKILKAPKFDLGKLMEVHGDY EDVGVK++RP DE M E
Sbjct: 201 TQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRP--ADETMVE 254
>sptr|Q9CAV0|Q9CAV0 Putative 40S ribosomal protein S3A (S phase
specific).
Length = 262
Score = 394 bits (1011), Expect = e-108
Identities = 191/229 (83%), Positives = 213/229 (93%), Gaps = 1/229 (0%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAPS+F+ RN+GKTLVSRTQGT+IAS+GLKHRVFEV LADLQGDED A
Sbjct: 21 VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNA 80
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
YRKIRLRAEDVQGRNVL FWGM+FTTDKLRSLVKKWQTLIEAHVDVKTTD+Y LRLFCI
Sbjct: 81 YRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCI 140
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
FTKRR NQVKRTCYAQ+SQIRQIRRKM +IM+ +AS+CDLK+LV+KFIPE IG+EIEK+
Sbjct: 141 AFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKA 200
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYK-EDVGVKLERPVE 310
T I+PLQNVFIRKVKILKAPKFDLGKLM+VHGDY EDVGVK++RP +
Sbjct: 201 TQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPAD 249
>sw|P49396|RS3A_BRARA 40S ribosomal protein S3a (S phase specific
protein BIS289).
Length = 261
Score = 385 bits (989), Expect = e-106
Identities = 196/237 (82%), Positives = 214/237 (90%), Gaps = 2/237 (0%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPF+KKDWYDIKAPS F+ RN+GKTLVSRTQGT+IAS+GLKHRVFEV LADL DEDQA
Sbjct: 20 VDPFAKKDWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLNKDEDQA 79
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
YRKIRLRAEDVQGRNVLT FWGM+FTTDKLRSLVKKWQTLIE+HVDVKTTDNY LRLFCI
Sbjct: 80 YRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCI 139
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMI-NQASTCDLKELVSKFIPEVIGKEIEK 457
FTKRR NQVKRTCYAQ+SQIRQIR KM EIMI +AS+CDLKELV+KFIPE IGK+IEK
Sbjct: 140 AFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEK 199
Query: 456 STSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLERPVEGDEAMQE 289
+T I+PLQNVFIRKVKILKAPKFDL KLMEVHGDY EDVGVK++RP DE ++E
Sbjct: 200 ATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP--ADEVVEE 254
>sptr|P93765|P93765 Cyc07 protein (Ribosomal protein S3A).
Length = 245
Score = 384 bits (987), Expect = e-105
Identities = 183/217 (84%), Positives = 206/217 (94%)
Frame = -3
Query: 990 DPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQAY 811
DPF+KKDWYDIKAPSVFSVRN+GKTLV+RTQGT+IAS+GLKHRVFE+ LADLQGDED ++
Sbjct: 22 DPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLKHRVFEISLADLQGDEDHSF 81
Query: 810 RKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIG 631
RKIRLRAED+QG+NVLTNFWGM+FTTDKLRSLV+KWQ+LIEAHVDVKTTD+Y LR+FCIG
Sbjct: 82 RKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFCIG 141
Query: 630 FTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKST 451
FTK+R NQ KRTCYAQ+SQIRQIRRKM EIM+NQA +CDLK+LV KFIPE IG+EIEK+T
Sbjct: 142 FTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAPSCDLKDLVQKFIPESIGREIEKAT 201
Query: 450 SSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKED 340
SI+PLQNVFIRKVKILKAPKFDLGKLMEVHGDY ED
Sbjct: 202 PSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNED 238
>sptrnew|AAP80855|AAP80855 Cyc07.
Length = 242
Score = 362 bits (929), Expect = 6e-99
Identities = 178/216 (82%), Positives = 196/216 (90%), Gaps = 1/216 (0%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPF+KK WYDIKAP +F+ RN+GKTLVSRTQGT+IAS+GLKHRVFEV LADLQ DEDQA
Sbjct: 21 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 80
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
YRKIRLRAEDVQG NVLTNFWGM+FTTDKLRSLV+KWQTLIEAHVDVKTTDNYMLR+F I
Sbjct: 81 YRKIRLRAEDVQGMNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYMLRMFAI 140
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIM+NQA++CDL ELV+KFIPEVIGKEIE +
Sbjct: 141 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLXELVNKFIPEVIGKEIEXA 200
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDL-GKLMEVHGDY 349
TS I PLQNV++RKVKI + P+ G EVHGDY
Sbjct: 201 TSGIXPLQNVYVRKVKIPEGPQVSTWGSFXEVHGDY 236
>sw|Q9XEG7|RS3A_TORRU 40S ribosomal protein S3a.
Length = 247
Score = 319 bits (818), Expect = 4e-86
Identities = 164/224 (73%), Positives = 187/224 (83%), Gaps = 1/224 (0%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYDIKAP G+ RT GT+IASDGL RVFEV LADLQ DEDQA
Sbjct: 20 VDPFSKKDWYDIKAPPRSRRARSGRRC-HRTAGTKIASDGLNFRVFEVSLADLQNDEDQA 78
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RKI+LRAEDVQG+NVLTNFWGM+FTTDKLRSLV+KWQ+LI+AHVDVKTTDNY +R+FCI
Sbjct: 79 FRKIKLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIQAHVDVKTTDNYQIRIFCI 138
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEK- 457
FTK+RPN R YAQ+SQI IRRKM EIM+ +A TCDLKELV+KFIPEVIGKEI++
Sbjct: 139 AFTKKRPNHT-RNFYAQSSQI-AIRRKMREIMVKEAQTCDLKELVAKFIPEVIGKEIDEW 196
Query: 456 STSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 325
+ I+PLQ+ FIRKVKILKAPKFDL KLMEVHGDY E+VG K+
Sbjct: 197 RSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>sw|P49241|RS3A_HUMAN 40S ribosomal protein S3a.
Length = 263
Score = 315 bits (807), Expect = 8e-85
Identities = 155/242 (64%), Positives = 196/242 (80%), Gaps = 7/242 (2%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RNIGKTLV+RTQGT+IASDGLK RVFEV LADLQ DE A
Sbjct: 21 VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK +L EDVQG+N LTNF GM+ T DK+ S+VKKWQT+IEAHVDVKTTD Y+LRLFC+
Sbjct: 80 FRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV 139
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQ+++T YAQ Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEK+
Sbjct: 140 GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKA 199
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYK-------EDVGVKLERPVEGDEAM 295
SI+PL +VF+RKVK+LK PKF+LGKLME+HG+ ++ G K+ER + +
Sbjct: 200 CQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPV 259
Query: 294 QE 289
QE
Sbjct: 260 QE 261
>sw|P49242|RS3A_RAT 40S ribosomal protein S3a (V-fos transformation
effector protein).
Length = 263
Score = 315 bits (806), Expect = 1e-84
Identities = 155/242 (64%), Positives = 196/242 (80%), Gaps = 7/242 (2%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RNIGKTLV+RTQGT+IASDGLK RVFEV LADLQ DE A
Sbjct: 21 VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK +L EDVQG+N LTNF GM+ T DK+ S+VKKWQT+IEAHVDVKTTD Y+LRLFC+
Sbjct: 80 FRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV 139
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQ+++T YAQ Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEK+
Sbjct: 140 GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKA 199
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLERPVEGDEAM 295
SI+PL +VF+RKVK+LK PKF+LGKLME+HG+ ++ G K+ER + +
Sbjct: 200 CQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGYEPPV 259
Query: 294 QE 289
QE
Sbjct: 260 QE 261
>sw|P97351|RS3A_MOUSE 40S ribosomal protein S3a.
Length = 263
Score = 315 bits (806), Expect = 1e-84
Identities = 155/242 (64%), Positives = 196/242 (80%), Gaps = 7/242 (2%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RNIGKTLV+RTQGT+IASDGLK RVFEV LADLQ DE A
Sbjct: 21 VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK +L EDVQG+N LTNF GM+ T DK+ S+VKKWQT+IEAHVDVKTTD Y+LRLFC+
Sbjct: 80 FRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV 139
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQ+++T YAQ Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEK+
Sbjct: 140 GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKA 199
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLERPVEGDEAM 295
SI+PL +VF+RKVK+LK PKF+LGKLME+HG+ ++ G K+ER + +
Sbjct: 200 CQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYEPPV 259
Query: 294 QE 289
QE
Sbjct: 260 QE 261
>sptrnew|AAH39659|AAH39659 Ribosomal protein S3a.
Length = 264
Score = 315 bits (806), Expect = 1e-84
Identities = 155/242 (64%), Positives = 196/242 (80%), Gaps = 7/242 (2%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RNIGKTLV+RTQGT+IASDGLK RVFEV LADLQ DE A
Sbjct: 22 VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 80
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK +L EDVQG+N LTNF GM+ T DK+ S+VKKWQT+IEAHVDVKTTD Y+LRLFC+
Sbjct: 81 FRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV 140
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQ+++T YAQ Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEK+
Sbjct: 141 GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKA 200
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLERPVEGDEAM 295
SI+PL +VF+RKVK+LK PKF+LGKLME+HG+ ++ G K+ER + +
Sbjct: 201 CQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYEPPV 260
Query: 294 QE 289
QE
Sbjct: 261 QE 262
>sptrnew|BAC40152|BAC40152 2 days neonate thymus thymic cells cDNA,
RIKEN full-length enriched library, clone:E430004H05
product:ribosomal protein S3a, full insert sequence.
Length = 264
Score = 315 bits (806), Expect = 1e-84
Identities = 155/242 (64%), Positives = 196/242 (80%), Gaps = 7/242 (2%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RNIGKTLV+RTQGT+IASDGLK RVFEV LADLQ DE A
Sbjct: 22 VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 80
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK +L EDVQG+N LTNF GM+ T DK+ S+VKKWQT+IEAHVDVKTTD Y+LRLFC+
Sbjct: 81 FRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV 140
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQ+++T YAQ Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEK+
Sbjct: 141 GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKA 200
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLERPVEGDEAM 295
SI+PL +VF+RKVK+LK PKF+LGKLME+HG+ ++ G K+ER + +
Sbjct: 201 CQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYEPPV 260
Query: 294 QE 289
QE
Sbjct: 261 QE 262
>sptrnew|BAC34341|BAC34341 2 days neonate thymus thymic cells cDNA,
RIKEN full-length enriched library, clone:C920016J02
product:ribosomal protein S3a, full insert sequence.
Length = 264
Score = 315 bits (806), Expect = 1e-84
Identities = 155/242 (64%), Positives = 196/242 (80%), Gaps = 7/242 (2%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RNIGKTLV+RTQGT+IASDGLK RVFEV LADLQ DE A
Sbjct: 22 VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 80
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK +L EDVQG+N LTNF GM+ T DK+ S+VKKWQT+IEAHVDVKTTD Y+LRLFC+
Sbjct: 81 FRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV 140
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQ+++T YAQ Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEK+
Sbjct: 141 GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKA 200
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLERPVEGDEAM 295
SI+PL +VF+RKVK+LK PKF+LGKLME+HG+ ++ G K+ER + +
Sbjct: 201 CQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYEPPV 260
Query: 294 QE 289
QE
Sbjct: 261 QE 262
>sptrnew|BAB28176|BAB28176 11 days embryo whole body cDNA, RIKEN
full-length enriched library, clone:2700038N16
product:ribosomal protein S3a, full insert sequence.
Length = 264
Score = 315 bits (806), Expect = 1e-84
Identities = 155/242 (64%), Positives = 196/242 (80%), Gaps = 7/242 (2%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RNIGKTLV+RTQGT+IASDGLK RVFEV LADLQ DE A
Sbjct: 22 VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 80
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK +L EDVQG+N LTNF GM+ T DK+ S+VKKWQT+IEAHVDVKTTD Y+LRLFC+
Sbjct: 81 FRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV 140
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQ+++T YAQ Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEK+
Sbjct: 141 GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKA 200
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLERPVEGDEAM 295
SI+PL +VF+RKVK+LK PKF+LGKLME+HG+ ++ G K+ER + +
Sbjct: 201 CQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYEPPV 260
Query: 294 QE 289
QE
Sbjct: 261 QE 262
>sptrnew|BAB27055|BAB27055 ES cells cDNA, RIKEN full-length enriched
library, clone:2410029J05 product:ribosomal protein S3a,
full insert sequence.
Length = 264
Score = 315 bits (806), Expect = 1e-84
Identities = 155/242 (64%), Positives = 196/242 (80%), Gaps = 7/242 (2%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RNIGKTLV+RTQGT+IASDGLK RVFEV LADLQ DE A
Sbjct: 22 VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 80
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK +L EDVQG+N LTNF GM+ T DK+ S+VKKWQT+IEAHVDVKTTD Y+LRLFC+
Sbjct: 81 FRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV 140
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQ+++T YAQ Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEK+
Sbjct: 141 GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKA 200
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLERPVEGDEAM 295
SI+PL +VF+RKVK+LK PKF+LGKLME+HG+ ++ G K+ER + +
Sbjct: 201 CQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYEPPV 260
Query: 294 QE 289
QE
Sbjct: 261 QE 262
>sptr|Q9D1S3|Q9D1S3 Rps3a protein (Ribosomal protein S3A).
Length = 264
Score = 314 bits (804), Expect = 2e-84
Identities = 155/242 (64%), Positives = 195/242 (80%), Gaps = 7/242 (2%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RNIGKTLV+RTQGT+IASDGLK RVFEV LADLQ DE A
Sbjct: 22 VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 80
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK L EDVQG+N LTNF GM+ T DK+ S+VKKWQT+IEAHVDVKTTD Y+LRLFC+
Sbjct: 81 FRKFELITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV 140
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQ+++T YAQ Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEK+
Sbjct: 141 GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKA 200
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLERPVEGDEAM 295
SI+PL +VF+RKVK+LK PKF+LGKLME+HG+ ++ G K+ER + +
Sbjct: 201 CQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGAKVERADGYEPPV 260
Query: 294 QE 289
QE
Sbjct: 261 QE 262
>sw|O73813|RS3A_ORYLA 40S ribosomal protein S3a (V-fos
transformation effector protein).
Length = 265
Score = 313 bits (803), Expect = 2e-84
Identities = 154/244 (63%), Positives = 196/244 (80%), Gaps = 9/244 (3%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RN+GKTLV+RTQGT+IASDGLK RVFEV LADLQ DE A
Sbjct: 21 VDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK +L EDVQG+N LTNF GM+ T DK+ S+VKKWQT+IEAHVDVKTTD Y+LRLFC+
Sbjct: 80 FRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV 139
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQV++T YAQ Q+RQIR+KM+EIM + T DLKE+V+K IP+ +GK+IEK+
Sbjct: 140 GFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKA 199
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD---------YKEDVGVKLERPVEGDE 301
SI+PL +V++RKVK+LK PKF+LGKLME+HG+ +D G K+ER +
Sbjct: 200 CQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDTGAKVERADGYEP 259
Query: 300 AMQE 289
+QE
Sbjct: 260 PIQE 263
>sw|O43999|RS3A_EIMTE 40S ribosomal protein S3a (EtS3a).
Length = 263
Score = 313 bits (801), Expect = 4e-84
Identities = 154/242 (63%), Positives = 196/242 (80%), Gaps = 7/242 (2%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RNIGKTLV+RTQGT+IASDGLK RVFEV LADLQ DE A
Sbjct: 21 VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK +L EDVQG+N LTNF GM+ T DK+ S+VKKWQT+IEAHVDVKTTD Y+LRLFC+
Sbjct: 80 FRKFKLITEDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHVDVKTTDGYLLRLFCV 139
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQ+++T YAQ Q+RQIR+KM+EIM + T DLKE+V+K IP+ IGK+IEK+
Sbjct: 140 GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKLIPDSIGKDIEKA 199
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLERPVEGDEAM 295
SI+PL +V++RKVK+LK PKF+LGKLME+HG+ ++ G K+ER + +
Sbjct: 200 CQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGAKVERADGYEPPV 259
Query: 294 QE 289
QE
Sbjct: 260 QE 261
>sptr|Q98TX2|Q98TX2 Ribosomal protein S3a.
Length = 264
Score = 312 bits (800), Expect = 5e-84
Identities = 153/242 (63%), Positives = 195/242 (80%), Gaps = 7/242 (2%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RNIGKTLV+RTQGT+IASDGLK RVFEV LADLQ DE A
Sbjct: 22 VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 80
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK +L EDVQG+N L NF GM+ T DK+ S+VKKWQT+IEAH+DVKTTD Y+LRLFC+
Sbjct: 81 FRKFKLITEDVQGKNCLINFHGMDLTRDKMCSMVKKWQTMIEAHIDVKTTDGYLLRLFCV 140
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQ+++T YAQ Q+RQIR+KMVEIM + T DLKE+V+K IP+ IGK+IEK+
Sbjct: 141 GFTKKRTNQIRKTSYAQHQQVRQIRKKMVEIMTREVQTNDLKEVVNKLIPDSIGKDIEKA 200
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLERPVEGDEAM 295
SI+PL +V++RKVK+LK PKF+LGKLME+HG+ ++ G K+ER + +
Sbjct: 201 CQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGAKVERADGYEPPV 260
Query: 294 QE 289
QE
Sbjct: 261 QE 262
>sptr|Q801S3|Q801S3 Similar to ribosomal protein S3a.
Length = 264
Score = 312 bits (799), Expect = 7e-84
Identities = 153/242 (63%), Positives = 195/242 (80%), Gaps = 7/242 (2%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RN+GKTLV+RTQGT+IASDGLK RVFEV LADLQ DE A
Sbjct: 22 VDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 80
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK +L EDVQG+N LTNF GM+ T DK+ S+VKKWQT+IEAHVDVKTTD Y+LRLFC+
Sbjct: 81 FRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV 140
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQ+++T YAQ Q+RQIR+KM EIM + T DLKE+V+K IP+ IGK+IEK+
Sbjct: 141 GFTKKRNNQIRKTSYAQHQQVRQIRKKMFEIMTREVQTNDLKEVVNKLIPDSIGKDIEKA 200
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD-------YKEDVGVKLERPVEGDEAM 295
SI+PL +V++RKVK+LK PKF+LGKLME+HG+ ++ G K+ER + +
Sbjct: 201 CQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGAKVERADGYEPPV 260
Query: 294 QE 289
QE
Sbjct: 261 QE 262
>sptr|Q90YS1|Q90YS1 40S ribosomal protein S3a (Fragment).
Length = 264
Score = 311 bits (797), Expect = 1e-83
Identities = 150/230 (65%), Positives = 189/230 (82%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPFSKKDWYD+KAP++F++RN+GKTLV+RTQGTRIASDGLK RVFEV LADLQ DE
Sbjct: 20 VDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVFEVSLADLQNDE-VP 78
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
+RK +L EDVQG+N LTNF GM+ T DK+ S+VKKWQT+IEAHVDVKTTD Y+LRLFC+
Sbjct: 79 FRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV 138
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
GFTK+R NQ+++T YAQ Q+RQIR+KM+EIM + T DLKE+V+K IP+ +GK+IEK+
Sbjct: 139 GFTKKRSNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSVGKDIEKA 198
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLERPVEGD 304
SI+PL +V++RKVK+LK PKF+LGKLME+HG+ K P EG+
Sbjct: 199 CQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSSSSAK---PAEGE 245
>sptr|Q871N9|Q871N9 Probable ribosomal protein 10, cytosolic.
Length = 256
Score = 306 bits (785), Expect = 3e-82
Identities = 148/227 (65%), Positives = 189/227 (83%), Gaps = 1/227 (0%)
Frame = -3
Query: 996 TVDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQ 817
T DPF++KDWY IKAP+ F+VR++GKTLV+RT G + A+D LK R+FEV LADLQ DED
Sbjct: 20 TQDPFARKDWYGIKAPAPFNVRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQKDEDH 79
Query: 816 AYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFC 637
++RK++LR +++QG+N LTNF G++FT+DKLRSLV+KWQTLIEA++ VKTTD+Y+LRLF
Sbjct: 80 SFRKVKLRVDEIQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANITVKTTDDYLLRLFA 139
Query: 636 IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEK 457
I FTKRRPNQVK+T YA +SQIR IRRKM EI+ +AS+C L +L SK IPEVIG+EIEK
Sbjct: 140 IAFTKRRPNQVKKTTYAASSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGREIEK 199
Query: 456 STSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLER 319
+T I+PLQNV IRKVK+LK PKFDLG LM +HG+ ++ G K+ER
Sbjct: 200 ATQGIYPLQNVHIRKVKLLKQPKFDLGALMSLHGESGSDEAGQKVER 246
>sw|P40910|RS3A_CANAL 40S ribosomal protein S3aE (S1).
Length = 255
Score = 301 bits (772), Expect = 9e-81
Identities = 139/214 (64%), Positives = 183/214 (85%)
Frame = -3
Query: 993 VDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGDEDQA 814
VDPF++KDW+DIKAP+ F RN+GKTL++R+ G + A+DGLK RVFEVCLADLQG ED +
Sbjct: 20 VDPFTRKDWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHS 79
Query: 813 YRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCI 634
YRKI+LR ++VQG+N+LTNF G++FT+DKLRSLV+KWQ+L+EA+V VKT+D+Y+LR+F I
Sbjct: 80 YRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAI 139
Query: 633 GFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKEIEKS 454
FTKR+PNQ+K T YAQ+S++R+ R+KM+EI+ + S C L +L SK IPEVIG+EIEKS
Sbjct: 140 AFTKRQPNQIKETTYAQSSKLREARKKMIEIIEREVSNCTLAQLTSKLIPEVIGREIEKS 199
Query: 453 TSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGD 352
T +IFPLQNV IRKVK+LK PKFD G L+ +HG+
Sbjct: 200 TQTIFPLQNVHIRKVKLLKQPKFDWGSLLALHGE 233
>sptrnew|EAA26738|EAA26738 Hypothetical protein.
Length = 337
Score = 301 bits (771), Expect = 1e-80
Identities = 148/230 (64%), Positives = 189/230 (82%), Gaps = 4/230 (1%)
Frame = -3
Query: 996 TVDPFSKKDWYDIKAPSVFSVRN---IGKTLVSRTQGTRIASDGLKHRVFEVCLADLQGD 826
T DPF++KDWY IKAP+ F+VR+ +GKTLV+RT G + A+D LK R+FEV LADLQ D
Sbjct: 98 TQDPFARKDWYGIKAPAPFNVRDLFSVGKTLVNRTTGLKNANDALKGRIFEVSLADLQKD 157
Query: 825 EDQAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLR 646
ED ++RK++LR +++QG+N LTNF G++FT+DKLRSLV+KWQTLIEA++ VKTTD+Y+LR
Sbjct: 158 EDHSFRKVKLRVDEIQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANITVKTTDDYLLR 217
Query: 645 LFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMINQASTCDLKELVSKFIPEVIGKE 466
LF I FTKRRPNQVK+T YA +SQIR IRRKM EI+ +AS+C L +L SK IPEVIG+E
Sbjct: 218 LFAIAFTKRRPNQVKKTTYAASSQIRAIRRKMTEIIQREASSCTLTQLTSKLIPEVIGRE 277
Query: 465 IEKSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLER 319
IEK+T I+PLQNV IRKVK+LK PKFDLG LM +HG+ ++ G K+ER
Sbjct: 278 IEKATQGIYPLQNVHIRKVKLLKQPKFDLGALMSLHGESGSDEAGQKVER 327
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 794,168,914
Number of Sequences: 1272877
Number of extensions: 16313676
Number of successful extensions: 48693
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48589
length of database: 406,886,216
effective HSP length: 124
effective length of database: 249,049,468
effective search space used: 64752861680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)