BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.536
(819 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q8S0P2|Q8S0P2 Ribosomal protein L28-like. 252 5e-66
sptr|O82204|O82204 Putative ribosomal protein L28. 202 3e-51
sptr|Q9M0E2|Q9M0E2 Hypothetical protein (Putative ribosomal prot... 200 2e-50
sptrnew|EAA33690|EAA33690 Predicted protein. 90 3e-17
sptr|Q8MZI5|Q8MZI5 GH04183p. 87 2e-16
sw|Q9VZS5|RL28_DROME 60S ribosomal protein L28. 84 3e-15
sw|Q962T2|RL28_SPOFR 60S ribosomal protein L28. 83 4e-15
sw|O14069|YFF6_SCHPO Probable 60S ribosomal protein C1687.06c. 83 4e-15
sptrnew|EAA10888|EAA10888 ENSANGP00000014265 (Fragment). 82 7e-15
sw|P46779|RL28_HUMAN 60S ribosomal protein L28. 80 2e-14
sptrnew|AAH24395|AAH24395 Ribosomal protein L28. 80 3e-14
sptrnew|BAC36209|BAC36209 10, 11 days embryo whole body cDNA, RI... 80 3e-14
sptrnew|BAB31362|BAB31362 Adult male kidney cDNA, RIKEN full-len... 80 3e-14
sptrnew|BAB28192|BAB28192 11 days embryo whole body cDNA, RIKEN ... 80 3e-14
sw|P41105|RL28_MOUSE 60S ribosomal protein L28. 80 3e-14
sw|Q9GS21|RL28_DICDI 60S ribosomal protein L28. 76 6e-13
sptrnew|AAH55584|AAH55584 Hypothetical protein. 75 1e-12
sptr|Q90YT9|Q90YT9 Ribosomal protein L28. 75 1e-12
sptrnew|AAH53798|AAH53798 Hypothetical protein. 74 2e-12
sw|P17702|RL28_RAT 60S ribosomal protein L28. 73 4e-12
sptr|Q9VZS4|Q9VZS4 CG12740 protein. 72 1e-11
sw|Q21930|RL28_CAEEL 60S ribosomal protein L28. 62 1e-08
sw|O00822|RL28_TRYCR 60S ribosomal protein L28. 40 0.029
sw|Q58058|PGK_METJA Phosphoglycerate kinase (EC 2.7.2.3). 38 0.14
sptrnew|EAA30963|EAA30963 Hypothetical protein. 37 0.24
sptr|Q8IHU0|Q8IHU0 Hypothetical protein. 37 0.32
sptr|O16511|O16511 C03A7.14 protein. 33 4.6
sptrnew|EAA34859|EAA34859 Predicted protein. 33 4.6
sptr|Q27383|Q27383 Hypothetical 40.7 kDa protein R09F10.2 in chr... 33 4.6
sptr|O16500|O16500 C03A7.4 protein. 33 4.6
>sptr|Q8S0P2|Q8S0P2 Ribosomal protein L28-like.
Length = 145
Score = 252 bits (643), Expect = 5e-66
Identities = 122/143 (85%), Positives = 135/143 (94%)
Frame = -2
Query: 731 MATVPGDLIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQ 552
MAT+P L+W++V+KNNSFLVKQFGNGNAKVQF+KEPNNLYNVHSYK+SGLANKKTVT+Q
Sbjct: 1 MATIPDSLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTVTVQ 60
Query: 551 PAAGKDSAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSAL 372
PA+GK++AVVLSTTKT+KQN PA L HKSVMRKEFRKMAKAVKNQV DNYYRPDLTK AL
Sbjct: 61 PASGKETAVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPAL 120
Query: 371 GRLSSVYRSLQVAKSGVKKKNRQ 303
RLS+VYRSLQVAKSGVKKKNRQ
Sbjct: 121 ARLSAVYRSLQVAKSGVKKKNRQ 143
>sptr|O82204|O82204 Putative ribosomal protein L28.
Length = 143
Score = 202 bits (515), Expect = 3e-51
Identities = 102/143 (71%), Positives = 121/143 (84%)
Frame = -2
Query: 731 MATVPGDLIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQ 552
MATVPG LIW+IV+ NN FLVKQFG GN+KVQF+KE NNL NVHSYK+SGLANKKTVTIQ
Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60
Query: 551 PAAGKDSAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSAL 372
AA KD AVVL+TTKTKKQN P +KS+++KEF +M+KAV NQV DNYYRPDL K+AL
Sbjct: 61 -AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAAL 119
Query: 371 GRLSSVYRSLQVAKSGVKKKNRQ 303
RLS++ + L+VAKSG K++NRQ
Sbjct: 120 ARLSAISKGLRVAKSGAKQRNRQ 142
>sptr|Q9M0E2|Q9M0E2 Hypothetical protein (Putative ribosomal protein
L28).
Length = 143
Score = 200 bits (508), Expect = 2e-50
Identities = 99/143 (69%), Positives = 120/143 (83%)
Frame = -2
Query: 731 MATVPGDLIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQ 552
MATVPG LIW+IV++NN FLVKQFG GNAKVQF+KE NNL N++SYK+SGLANKKTVTIQ
Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60
Query: 551 PAAGKDSAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSAL 372
AAGKD VVL TTKTK+QN P +KS+++KEF +M+K V NQV DNYYRPDL K+AL
Sbjct: 61 -AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAAL 119
Query: 371 GRLSSVYRSLQVAKSGVKKKNRQ 303
RLS++ + L+VAKSG K++NRQ
Sbjct: 120 ARLSAISKGLRVAKSGPKRRNRQ 142
>sptrnew|EAA33690|EAA33690 Predicted protein.
Length = 150
Score = 90.1 bits (222), Expect = 3e-17
Identities = 58/143 (40%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Frame = -2
Query: 731 MATVPGDLIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQ 552
++ V DLIW+I R +NSFLVK+ G VQF+++P NL N HS KY+G N K V +
Sbjct: 3 LSNVSADLIWEITRSHNSFLVKRKSGGG--VQFSRDPLNLTNKHSRKYAGFVNDKAVGVV 60
Query: 551 PAAGKDSAVVLSTTKTKKQNTP-AKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSA 375
P G+ VV++T K N P A+ + K RK KA+ QV YR DL K+A
Sbjct: 61 P--GEKGGVVVTTKKAGSINKPAARYTVAFGANKTARKTYKAIARQVAG--YRSDLLKAA 116
Query: 374 LGRLSSVYRSLQVAKSGVKKKNR 306
+ R S++ RS + K +K R
Sbjct: 117 VARASAIRRSQRAVKPEPAQKLR 139
>sptr|Q8MZI5|Q8MZI5 GH04183p.
Length = 236
Score = 87.4 bits (215), Expect = 2e-16
Identities = 58/141 (41%), Positives = 82/141 (58%)
Frame = -2
Query: 737 REMATVPGDLIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVT 558
REMAT L W I+R NN+FL+K+ + K F+ EPNNL +V SY+YSG+ +KKT+
Sbjct: 91 REMAT-SSHLNWLIIRNNNAFLLKK---RDVKKPFSTEPNNLASVSSYRYSGIVHKKTLG 146
Query: 557 IQPAAGKDSAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKS 378
+ PAA K + K K PAK + + + R+ K +KN + + YR DLT++
Sbjct: 147 VVPAADKKGFTAV-LKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQA 205
Query: 377 ALGRLSSVYRSLQVAKSGVKK 315
AL R S+V RS + A KK
Sbjct: 206 ALRRASAVLRSQKPAPVKGKK 226
>sw|Q9VZS5|RL28_DROME 60S ribosomal protein L28.
Length = 144
Score = 83.6 bits (205), Expect = 3e-15
Identities = 53/132 (40%), Positives = 77/132 (58%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAAGKDS 531
L W I+R NN+FL+K+ + K F+ EPNNL +V SY+YSG+ +KKT+ + PAA K
Sbjct: 7 LNWLIIRNNNAFLLKK---RDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 530 AVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSALGRLSSVY 351
+ K K PAK + + + R+ K +KN + + YR DLT++AL R S+V
Sbjct: 64 FTAV-LKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVL 122
Query: 350 RSLQVAKSGVKK 315
RS + A KK
Sbjct: 123 RSQKPAPVKGKK 134
>sw|Q962T2|RL28_SPOFR 60S ribosomal protein L28.
Length = 139
Score = 83.2 bits (204), Expect = 4e-15
Identities = 49/128 (38%), Positives = 73/128 (57%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAAGKDS 531
L W I+R NN+FLVK+ N K F+KEPNN+ N++SY+Y+GL KK V + +
Sbjct: 5 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 61
Query: 530 AVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSALGRLSSVY 351
V+ K K N PAK + + + R+ VK + N+YR DL+K+ L R S++
Sbjct: 62 FTVV-YKKAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAIL 120
Query: 350 RSLQVAKS 327
RS + K+
Sbjct: 121 RSQRPIKA 128
>sw|O14069|YFF6_SCHPO Probable 60S ribosomal protein C1687.06c.
Length = 134
Score = 83.2 bits (204), Expect = 4e-15
Identities = 50/136 (36%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Frame = -2
Query: 725 TVPGDLIWQIVRKNNSFLVK--QFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQ 552
+V DLIWQ++R NN FLVK +FG +QF +EP N+ ++ ++SGL N K V +Q
Sbjct: 2 SVSNDLIWQVIRDNNRFLVKRPEFGG----IQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 57
Query: 551 PAAGKDSAVVLSTTKTKKQNTPAKLSHKSVM-RKEFRKMAKAVKNQVGDNYYRPDLTKSA 375
A V+++ T K PAKL K V+ RK K++ ++G YR DL K +
Sbjct: 58 -ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVS 116
Query: 374 LGRLSSVYRSLQVAKS 327
+ R S++ S + K+
Sbjct: 117 VARASAILSSQRPKKT 132
>sptrnew|EAA10888|EAA10888 ENSANGP00000014265 (Fragment).
Length = 162
Score = 82.4 bits (202), Expect = 7e-15
Identities = 52/145 (35%), Positives = 78/145 (53%)
Frame = -2
Query: 734 EMATVPGDLIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTI 555
E+ L W IVR +N+FL+K+ + + F+ EP NL N+ S++YSGL + KT+TI
Sbjct: 3 EIIMASSHLNWLIVRDHNAFLLKR---RDIRKPFSTEPGNLTNLSSFRYSGLVHHKTITI 59
Query: 554 QPAAGKDSAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSA 375
PA K V + + K N PAK K +++ R+ K + N + N YR DL +A
Sbjct: 60 TPAEKKGVNFVYN--RKKVLNKPAKAPVKVTLKEGPRRTLKKIANMMKANRYRADLRGAA 117
Query: 374 LGRLSSVYRSLQVAKSGVKKKNRQP 300
L R S++ RS + K+ K P
Sbjct: 118 LRRASAILRSQRPTKTRKGKAGAAP 142
>sw|P46779|RL28_HUMAN 60S ribosomal protein L28.
Length = 136
Score = 80.5 bits (197), Expect = 2e-14
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAA-GKD 534
L W +VR +SFL+K+ K ++ EPNNL +S++Y+GL ++KTV ++PAA GK
Sbjct: 4 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 58
Query: 533 SAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSALGRLSSV 354
VV+ + Q PA ++ + K R ++++ + N YRPDL +A+ R S++
Sbjct: 59 VVVVIK--RRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI 116
Query: 353 YRSLQVAKSGVKKKNRQPT 297
RS + VK+K +PT
Sbjct: 117 LRSQKPVM--VKRKRTRPT 133
>sptrnew|AAH24395|AAH24395 Ribosomal protein L28.
Length = 137
Score = 80.1 bits (196), Expect = 3e-14
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAA-GKD 534
L W +VR +SFL+K+ K ++ EPNNL +S++Y+GL ++KTV ++PAA GK
Sbjct: 5 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 533 SAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSALGRLSSV 354
VV+ + Q PA ++ + K R ++++ + N YRPDL +A+ R S++
Sbjct: 60 VVVVMK--RRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI 117
Query: 353 YRSLQVAKSGVKKKNRQPT 297
RS + VK+K +PT
Sbjct: 118 LRSQKPVV--VKRKRTRPT 134
>sptrnew|BAC36209|BAC36209 10, 11 days embryo whole body cDNA, RIKEN
full-length enriched library, clone:2810473M21
product:ribosomal protein L28, full insert sequence.
Length = 137
Score = 80.1 bits (196), Expect = 3e-14
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAA-GKD 534
L W +VR +SFL+K+ K ++ EPNNL +S++Y+GL ++KTV ++PAA GK
Sbjct: 5 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 533 SAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSALGRLSSV 354
VV+ + Q PA ++ + K R ++++ + N YRPDL +A+ R S++
Sbjct: 60 VVVVMK--RRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI 117
Query: 353 YRSLQVAKSGVKKKNRQPT 297
RS + VK+K +PT
Sbjct: 118 LRSQKPVV--VKRKRTRPT 134
>sptrnew|BAB31362|BAB31362 Adult male kidney cDNA, RIKEN full-length
enriched library, clone:0610007G19 product:ribosomal
protein L28, full insert sequence.
Length = 137
Score = 80.1 bits (196), Expect = 3e-14
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAA-GKD 534
L W +VR +SFL+K+ K ++ EPNNL +S++Y+GL ++KTV ++PAA GK
Sbjct: 5 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 533 SAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSALGRLSSV 354
VV+ + Q PA ++ + K R ++++ + N YRPDL +A+ R S++
Sbjct: 60 VVVVMK--RRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI 117
Query: 353 YRSLQVAKSGVKKKNRQPT 297
RS + VK+K +PT
Sbjct: 118 LRSQKPVV--VKRKRTRPT 134
>sptrnew|BAB28192|BAB28192 11 days embryo whole body cDNA, RIKEN
full-length enriched library, clone:2700043M16
product:ribosomal protein L28, full insert sequence.
Length = 137
Score = 80.1 bits (196), Expect = 3e-14
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAA-GKD 534
L W +VR +SFL+K+ K ++ EPNNL +S++Y+GL ++KTV ++PAA GK
Sbjct: 5 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 59
Query: 533 SAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSALGRLSSV 354
VV+ + Q PA ++ + K R ++++ + N YRPDL +A+ R S++
Sbjct: 60 VVVVMK--RRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI 117
Query: 353 YRSLQVAKSGVKKKNRQPT 297
RS + VK+K +PT
Sbjct: 118 LRSQKPVV--VKRKRTRPT 134
>sw|P41105|RL28_MOUSE 60S ribosomal protein L28.
Length = 136
Score = 80.1 bits (196), Expect = 3e-14
Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 1/139 (0%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAA-GKD 534
L W +VR +SFL+K+ K ++ EPNNL +S++Y+GL ++KTV ++PAA GK
Sbjct: 4 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 58
Query: 533 SAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSALGRLSSV 354
VV+ + Q PA ++ + K R ++++ + N YRPDL +A+ R S++
Sbjct: 59 VVVVMK--RRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI 116
Query: 353 YRSLQVAKSGVKKKNRQPT 297
RS + VK+K +PT
Sbjct: 117 LRSQKPVV--VKRKRTRPT 133
>sw|Q9GS21|RL28_DICDI 60S ribosomal protein L28.
Length = 132
Score = 75.9 bits (185), Expect = 6e-13
Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 1/138 (0%)
Frame = -2
Query: 713 DLIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAAGKD 534
DL+W I++KNN+FL G + + EP NL N +S KYSGLA + T+ + GK
Sbjct: 4 DLVWSIIKKNNAFLKSSHG-----LTLSAEPGNLRNKNSLKYSGLARRTTIDVAAVNGK- 57
Query: 533 SAVVLSTTKTKKQNTPAKLSHKSVMRK-EFRKMAKAVKNQVGDNYYRPDLTKSALGRLSS 357
VV+S+ KK PA+ + RK A+ VK Y P+L +ALGRL
Sbjct: 58 --VVVSSKIVKKAAFPAQSKKTTTFSTVNTRKTARFVKTLA--TQYAPELRAAALGRLHR 113
Query: 356 VYRSLQVAKSGVKKKNRQ 303
V +L+ AK +K ++
Sbjct: 114 VQSALRSAKKAAARKAKK 131
>sptrnew|AAH55584|AAH55584 Hypothetical protein.
Length = 138
Score = 75.1 bits (183), Expect = 1e-12
Identities = 50/138 (36%), Positives = 78/138 (56%), Gaps = 1/138 (0%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAA-GKD 534
L W ++R ++SFL+K+ K ++ EPNNL ++++++GL ++KT+ I+PAA GK
Sbjct: 6 LQWMVIRNSSSFLIKR-----NKQTYSTEPNNLKARNAFRFNGLIHRKTIGIEPAADGKG 60
Query: 533 SAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSALGRLSSV 354
VVL K Q PA K + K R +V+N + N YR DL +AL R+S++
Sbjct: 61 VVVVLK--KRSGQRKPATSYGKITINKNSRATLASVRNIIRKNKYRRDLRMAALRRVSAI 118
Query: 353 YRSLQVAKSGVKKKNRQP 300
S Q KK++R P
Sbjct: 119 LSS-QKPVVVRKKRSRAP 135
>sptr|Q90YT9|Q90YT9 Ribosomal protein L28.
Length = 137
Score = 74.7 bits (182), Expect = 1e-12
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 1/139 (0%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAA-GKD 534
L W ++R N+SFL+K+ G ++ EPNNL ++++++GL ++KTV ++ AA GK
Sbjct: 5 LQWMVIRNNSSFLIKRNGQ-----TYSTEPNNLKARNAFRFNGLIHRKTVGVEQAADGKG 59
Query: 533 SAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSALGRLSSV 354
++L K PAK K + K R ++N + N YR DL +AL R S++
Sbjct: 60 VVIILK--KRAGHRKPAKAYEKITINKNSRTTLNRLRNIIRKNKYRKDLRMAALRRASAI 117
Query: 353 YRSLQVAKSGVKKKNRQPT 297
+S + VKKK + T
Sbjct: 118 LKSQKPVV--VKKKRSRAT 134
>sptrnew|AAH53798|AAH53798 Hypothetical protein.
Length = 137
Score = 73.9 bits (180), Expect = 2e-12
Identities = 54/136 (39%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAA-GKD 534
L W IVR +SF+VK+ N +V F+ EPNNL +S++Y+G +KKTV ++PAA GK
Sbjct: 5 LQWMIVRNCSSFIVKR----NHQV-FSTEPNNLKARNSFRYNGPIHKKTVGVEPAADGKG 59
Query: 533 SAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSALGRLSSV 354
VV+ K Q PA K + K R +V++ + N YR DL +AL R S++
Sbjct: 60 VIVVMK--KRAGQRKPATSYEKITINKNSRSTLSSVRHIIRKNNYRKDLRMAALRRASAI 117
Query: 353 YRSLQVAKSGVKKKNR 306
+S K V KK R
Sbjct: 118 LKS---QKPVVVKKKR 130
>sw|P17702|RL28_RAT 60S ribosomal protein L28.
Length = 136
Score = 73.2 bits (178), Expect = 4e-12
Identities = 45/138 (32%), Positives = 76/138 (55%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAAGKDS 531
L W +VR +SFL+K+ K ++ EPNNL +S++Y+GL ++KTV ++ A
Sbjct: 4 LQWMVVRNCSSFLIKR-----NKQTYSTEPNNLKARNSFRYNGLIHRKTVGVE-AWPDGK 57
Query: 530 AVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSALGRLSSVY 351
VV+ + Q PA ++ + K R ++++ + N YRPDL +A+ R S++
Sbjct: 58 GVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAIL 117
Query: 350 RSLQVAKSGVKKKNRQPT 297
RS + VK+K +PT
Sbjct: 118 RSQKPVV--VKRKRTRPT 133
>sptr|Q9VZS4|Q9VZS4 CG12740 protein.
Length = 165
Score = 71.6 bits (174), Expect = 1e-11
Identities = 43/110 (39%), Positives = 64/110 (58%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAAGKDS 531
L W I+R NN+FL+K+ + K F+ EPNNL +V SY+YSG+ +KKT+ + PAA K
Sbjct: 7 LNWLIIRNNNAFLLKK---RDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 530 AVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTK 381
+ K K PAK + + + R+ K +KN + + YR DLT+
Sbjct: 64 FTAV-LKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQ 112
>sw|Q21930|RL28_CAEEL 60S ribosomal protein L28.
Length = 126
Score = 61.6 bits (148), Expect = 1e-08
Identities = 48/132 (36%), Positives = 68/132 (51%)
Frame = -2
Query: 710 LIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAAGKDS 531
L+WQ++R N++FL Q G G +F+ E NL V+S KYSGLANK + + AA
Sbjct: 5 LVWQVIRNNSAFLRTQRGIGK---RFSTEKFNLKKVNSPKYSGLANKHAIDVSAAA---K 58
Query: 530 AVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVKNQVGDNYYRPDLTKSALGRLSSVY 351
VV+ST K PAK S + K + + G N + K A R +++
Sbjct: 59 GVVVSTKNEK--GRPAKAVTTSTLSKTPVASVRRLAKNAGFNKF----NKLAQRRAAAIV 112
Query: 350 RSLQVAKSGVKK 315
RS QV K+ V+K
Sbjct: 113 RS-QVKKAKVQK 123
>sw|O00822|RL28_TRYCR 60S ribosomal protein L28.
Length = 146
Score = 40.4 bits (93), Expect = 0.029
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
Frame = -2
Query: 713 DLIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGLANKKTVTIQPAAGKD 534
DL W +VR+N+ FL K+ G ++ + +P N + +++G N K ++ K
Sbjct: 6 DLQWLLVRQNSKFLQKRNG-----IRLSSDPFNNNANWTKRHAGFLNTKAAVVKT---KG 57
Query: 533 SAVVLSTTKTKKQNTPAKLSHKSVMRK--EFRKMAKAVKNQVGDNYYRPDLTKSALGRLS 360
++++T K N P + K+VM E ++KAV RPDL A R
Sbjct: 58 DRILVTTKDGKAGNKPKSMYKKAVMDAGVEASVVSKAVA------AVRPDLASIASRRAR 111
Query: 359 SVYRSLQVAK 330
+ +L+ K
Sbjct: 112 KMASTLEHMK 121
>sw|Q58058|PGK_METJA Phosphoglycerate kinase (EC 2.7.2.3).
Length = 417
Score = 38.1 bits (87), Expect = 0.14
Identities = 30/104 (28%), Positives = 51/104 (49%)
Frame = +3
Query: 234 WRHWINIS*DYGHQRQNTGLVRRLPVLLLDTRLGNLEAAVHRAQPTKGRLGQIRPVIVVA 413
W+ W NI+ ++ T L++RL L D + + AA HRAQP+ P+I
Sbjct: 129 WKKWENIT---PKKQAETNLIKRLAPLF-DYFVNDAFAAAHRAQPSLVGFSYYMPMI-AG 183
Query: 414 NLVFHSLGHLAELLAHYRLVAELRGCVLLLGLGSREDHSRVLSS 545
L+ +G L+++L + + CV +LG +D RV+ +
Sbjct: 184 RLMEREVGVLSKVLENPE-----KPCVYVLGGAKADDSIRVMKN 222
>sptrnew|EAA30963|EAA30963 Hypothetical protein.
Length = 815
Score = 37.4 bits (85), Expect = 0.24
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 2/195 (1%)
Frame = -2
Query: 776 TERGDAEAPHLRRREMATVPGDLIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHS 597
+ER A+ L E+ + ++++ FL ++ + +V T++ L + H
Sbjct: 382 SERPAADEADLELVELGGIEQVYHASCCKRSSRFLTEKLDSRLRRV--TEDTKRLRDEHE 439
Query: 596 YKYSGLAN--KKTVTIQPAAGKDSAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKMAKAVK 423
LA K T + ++A V K K + +L ++S RK R A ++
Sbjct: 440 KIIKRLAELEAKDATYEARIRNETAHVAERYKQKCEQLEKRLENESEERK--RLEASLIE 497
Query: 422 NQVGDNYYRPDLTKSALGRLSSVYRSLQVAKSGVKKKNRQPTH*ACVLSLVPIVSAYIYP 243
Q G Y P ++ SSV A SG+K +R PTH +P +S+ P
Sbjct: 498 LQTGKRYGVPTASRRTTTS-SSVSTKTIPAPSGLKMPSRPPTH------PLPTISS-SNP 549
Query: 242 MSPTVLRLVRTRANR 198
+ PT++++ A+R
Sbjct: 550 ILPTLVKMPTPIADR 564
>sptr|Q8IHU0|Q8IHU0 Hypothetical protein.
Length = 127
Score = 37.0 bits (84), Expect = 0.32
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Frame = -2
Query: 731 MATVPGDLIWQIVRKNNSFLVKQFGNGNAKVQFTKEPNNLYNVHSYKYSGL--ANKKTVT 558
M+ V L+W++ RK+N F+ K K F +P N+ ++ SGL +N VT
Sbjct: 1 MSNVSNALVWELTRKSNCFIKK--NKAGKKGVFLCDPLNVNYKNTPSSSGLVKSNSTNVT 58
Query: 557 IQPAAGKDSAVVLSTTKTKKQNTPAKLSHKSVMRKEFRKM 438
+ KD VV S KT K++ K+ K K+
Sbjct: 59 L-----KDGKVVFS-VKTSKESNVVNQHFKAKNMKNVEKL 92
>sptr|O16511|O16511 C03A7.14 protein.
Length = 445
Score = 33.1 bits (74), Expect = 4.6
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = -1
Query: 528 CGPLYYQDQEAEHTREAQPQVCNAQGVPQDGQG----CEKPGWRQLLQA*SDQVGPW*AE 361
CG Q + + Q Q C+ Q P Q C +P Q +Q S Q P
Sbjct: 28 CGCAQPQQSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQQTQQVQVQSTQCAP---- 83
Query: 360 LCVPQPPGCQVWCQEEEQAAYALSLC 283
CQ CQ++ QA+ ++S C
Sbjct: 84 -------ACQQSCQQQCQASPSVSQC 102
>sptrnew|EAA34859|EAA34859 Predicted protein.
Length = 1025
Score = 33.1 bits (74), Expect = 4.6
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -2
Query: 782 PGTERGDAEAPHLRRREMATVPGDLIWQIVRKNNSFLVKQFGNGNA 645
PGT A APH + PG LI QI N L+ Q N ++
Sbjct: 688 PGTPAPSAPAPHFTAAPSPSRPGPLITQIPANTNFLLLSQLSNADS 733
>sptr|Q27383|Q27383 Hypothetical 40.7 kDa protein R09F10.2 in
chromosome X precursor.
Length = 378
Score = 33.1 bits (74), Expect = 4.6
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = -1
Query: 528 CGPLYYQDQEAEHTREAQPQVCNAQGVPQDGQG----CEKPGWRQLLQA*SDQVGPW*AE 361
CG Q + + Q Q C+ Q P Q C +P Q +Q S Q P
Sbjct: 27 CGCAQPQQSQCSCQQVQQTQSCSCQSAPVQQQAPSCSCAQPQQTQTVQVQSTQCAP---- 82
Query: 360 LCVPQPPGCQVWCQEEEQAAYALSLC 283
CQ C+++ Q+A A+S C
Sbjct: 83 -------ACQQSCRQQCQSAPAVSQC 101
>sptr|O16500|O16500 C03A7.4 protein.
Length = 388
Score = 33.1 bits (74), Expect = 4.6
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = -1
Query: 528 CGPLYYQDQEAEHTREAQPQVCNAQGVPQDGQG----CEKPGWRQLLQA*SDQVGPW*AE 361
CG Q + + Q Q C+ Q P Q C +P Q +Q S Q P
Sbjct: 28 CGCAQPQQSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQQTQQVQVQSTQCAP---- 83
Query: 360 LCVPQPPGCQVWCQEEEQAAYALSLC 283
CQ CQ++ QA+ ++S C
Sbjct: 84 -------ACQQSCQQQCQASPSVSQC 102
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 625,863,841
Number of Sequences: 1272877
Number of extensions: 13860450
Number of successful extensions: 40354
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40301
length of database: 406,886,216
effective HSP length: 121
effective length of database: 252,868,099
effective search space used: 38183082949
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)