BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.458
(708 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q8W1C9|Q8W1C9 Ribosomal protein L35A. 220 2e-56
sptr|Q9ATW9|Q9ATW9 Ribosomal protein L35A. 219 2e-56
sptr|Q9ATF4|Q9ATF4 Ribosomal protein L33. 203 2e-51
sptr|Q9LMK0|Q9LMK0 F10K1.22 protein (Ribosomal protein, putative... 200 1e-50
sptr|Q9C912|Q9C912 Putative ribosomal protein. 200 1e-50
sw|P51422|R35A_ARATH 60S ribosomal protein L35a. 195 4e-49
sptr|Q9FZH0|Q9FZH0 Putative ribosomal protein (At1g41880). 195 5e-49
sptr|Q8IHT9|Q8IHT9 Ribosomal protein, putative. 127 2e-28
sptr|Q962S9|Q962S9 Ribosomal protein L35A. 121 8e-27
sptrnew|EAA17804|EAA17804 Ribosomal protein L35Ae, putative. 120 2e-26
sw|P05744|R33A_YEAST 60S ribosomal protein L33-A (L37A) (YL37) (... 118 8e-26
sw|P49180|R35A_CAEEL 60S ribosomal protein L35a. 117 1e-25
sw|P41056|R33B_YEAST 60S ribosomal protein L33-B (L37B) (YL37) (... 116 2e-25
sptr|Q86E43|Q86E43 Clone ZZZ247 mRNA sequence. 116 3e-25
sptrnew|AAH53771|AAH53771 Hypothetical protein. 113 3e-24
sw|P02434|R35A_XENLA 60S ribosomal protein L35a (L32). 113 3e-24
sw|Q9USX4|R33A_SCHPO 60S ribosomal protein L33-A (L37A). 112 6e-24
sptr|Q9DC85|Q9DC85 2810431L15Rik protein. 111 1e-23
sw|Q90YT3|R35A_ICTPU 60S ribosomal protein L35a. 111 1e-23
sptrnew|AAH27223|AAH27223 Rpl35a protein. 110 1e-23
sptrnew|BAC25818|BAC25818 10, 11 days embryo whole body cDNA, RI... 110 1e-23
sptrnew|BAB27124|BAB27124 ES cells cDNA, RIKEN full-length enric... 110 1e-23
sptrnew|CAA76215|CAA76215 Ribosomal protein L35a. 110 1e-23
sw|P04646|R35A_RAT 60S ribosomal protein L35a. 110 1e-23
sptrnew|BAC21647|BAC21647 Ribosomal protein L35a. 110 2e-23
sw|P18077|R35A_HUMAN 60S ribosomal protein L35a. 110 2e-23
sw|O55142|R35A_MOUSE 60S ribosomal protein L35a. 109 4e-23
sptr|Q8BQV7|Q8BQV7 Ribosomal protein L35a. 108 5e-23
sw|Q9USG6|R33B_SCHPO 60S ribosomal protein L33-B (L37B). 108 7e-23
sptr|Q9VNB9|Q9VNB9 CG2099 protein (RH44960p) (RE17737p). 105 4e-22
>sptr|Q8W1C9|Q8W1C9 Ribosomal protein L35A.
Length = 112
Score = 220 bits (560), Expect = 2e-56
Identities = 106/112 (94%), Positives = 108/112 (96%)
Frame = +1
Query: 97 MVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKA 276
MVKGRTGQRVRLYVRGT+LGYKRSKSNQYETTSLVQIEGVNTKEDVAWY GKRMAYIYKA
Sbjct: 1 MVKGRTGQRVRLYVRGTILGYKRSKSNQYETTSLVQIEGVNTKEDVAWYAGKRMAYIYKA 60
Query: 277 KTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
KTKSS T YRCIWGKV RPHGNSGVVRAKF+SNLPPESMGRKVRVFMYPSSI
Sbjct: 61 KTKSSETRYRCIWGKVTRPHGNSGVVRAKFKSNLPPESMGRKVRVFMYPSSI 112
>sptr|Q9ATW9|Q9ATW9 Ribosomal protein L35A.
Length = 112
Score = 219 bits (559), Expect = 2e-56
Identities = 105/112 (93%), Positives = 108/112 (96%)
Frame = +1
Query: 97 MVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKA 276
MVKGRTGQRVRLYVRGT+LGYKRSKSNQYETTSLVQIEGVNTKEDVAWY GKRMAYIYKA
Sbjct: 1 MVKGRTGQRVRLYVRGTILGYKRSKSNQYETTSLVQIEGVNTKEDVAWYAGKRMAYIYKA 60
Query: 277 KTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
KTKSS T YRCIWGK+ RPHGNSGVVRAKF+SNLPPESMGRKVRVFMYPSSI
Sbjct: 61 KTKSSETRYRCIWGKITRPHGNSGVVRAKFKSNLPPESMGRKVRVFMYPSSI 112
>sptr|Q9ATF4|Q9ATF4 Ribosomal protein L33.
Length = 112
Score = 203 bits (517), Expect = 2e-51
Identities = 93/112 (83%), Positives = 103/112 (91%)
Frame = +1
Query: 97 MVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKA 276
MVKGR G+RVRLYVRGT+LGYKRSKSNQY TSL+QIEGVNTKE+V WY GKRMAY+YKA
Sbjct: 1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVGWYAGKRMAYVYKA 60
Query: 277 KTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
K K G+HYRCIWGKVARPHGNSGVVRAKF+SNLPP+SMG +VRVFMYPS+I
Sbjct: 61 KVKKDGSHYRCIWGKVARPHGNSGVVRAKFKSNLPPKSMGARVRVFMYPSNI 112
>sptr|Q9LMK0|Q9LMK0 F10K1.22 protein (Ribosomal protein, putative)
(Hypothetical protein) (At1g07070).
Length = 112
Score = 200 bits (509), Expect = 1e-50
Identities = 93/112 (83%), Positives = 103/112 (91%)
Frame = +1
Query: 97 MVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKA 276
MVKGR G+RVRLYVRGT+LGYKRSKSNQY TSLVQ+EGVNT E+V+WY GKRMAYIYKA
Sbjct: 1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60
Query: 277 KTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
KTK +G+HYRCIWGKV RPHGNSGVVRAKF SNLPP+SMG +VRVFMYPS+I
Sbjct: 61 KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>sptr|Q9C912|Q9C912 Putative ribosomal protein.
Length = 112
Score = 200 bits (509), Expect = 1e-50
Identities = 94/112 (83%), Positives = 103/112 (91%)
Frame = +1
Query: 97 MVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKA 276
MVKGR G+RVRLYVRGT+LGYKRSKSNQY TSLVQIEGVNT+E+V WY GKRMAYIYKA
Sbjct: 1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60
Query: 277 KTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
KTK +G+HYRCIWGKV RPHGNSGVVRAKF SNLPP+SMG +VRVFMYPS+I
Sbjct: 61 KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>sw|P51422|R35A_ARATH 60S ribosomal protein L35a.
Length = 111
Score = 195 bits (496), Expect = 4e-49
Identities = 91/111 (81%), Positives = 102/111 (91%)
Frame = +1
Query: 100 VKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAK 279
+KGR G+RVRLYVRGTVLGYKRSKSNQY TSLVQIEGVNT+E+V WY GKR+AYIYKAK
Sbjct: 1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60
Query: 280 TKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
TK +G+HYRCIWGKV RPHGNSGVVR+KF SNLPP+SMG +VRVFMYPS+I
Sbjct: 61 TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>sptr|Q9FZH0|Q9FZH0 Putative ribosomal protein (At1g41880).
Length = 111
Score = 195 bits (495), Expect = 5e-49
Identities = 90/111 (81%), Positives = 102/111 (91%)
Frame = +1
Query: 100 VKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAK 279
+KGR G+RVRLYVRGTVLGYKRSKSNQY TSL+QIEGVNT+E+V WY GKR+AYIYKAK
Sbjct: 1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60
Query: 280 TKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
TK +G+HYRCIWGKV RPHGNSGVVR+KF SNLPP+SMG +VRVFMYPS+I
Sbjct: 61 TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>sptr|Q8IHT9|Q8IHT9 Ribosomal protein, putative.
Length = 140
Score = 127 bits (318), Expect = 2e-28
Identities = 55/105 (52%), Positives = 77/105 (73%)
Frame = +1
Query: 118 QRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKSSGT 297
Q VRLY +G +LGYKRS+ NQ +L+ I+ VNTK+ +Y GKR+AY+Y+ G
Sbjct: 36 QAVRLYEKGVILGYKRSQRNQDPNFTLISIKNVNTKKHAQFYVGKRVAYVYRTTKHHDGV 95
Query: 298 HYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
+CIWGKV R HGNSGV+RAKF++++PP++ G +VR+ MYPS+I
Sbjct: 96 KIKCIWGKVCRTHGNSGVIRAKFKTHIPPKAFGDRVRILMYPSNI 140
>sptr|Q962S9|Q962S9 Ribosomal protein L35A.
Length = 159
Score = 121 bits (304), Expect = 8e-27
Identities = 62/134 (46%), Positives = 83/134 (61%), Gaps = 8/134 (5%)
Frame = +1
Query: 55 PASPDSRGRSCSVEMVKGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDV 234
PA+P ++ K R G RLY + GYKR NQ+E T+L++IEG ++ED
Sbjct: 29 PAAPAEPPKAVRKVSSKPRHG---RLYAKAVFTGYKRGLRNQHENTALLKIEGAKSREDA 85
Query: 235 AWYCGKRMAYIYKAKTKS--------SGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPES 390
+Y GKR Y+Y+AK ++ T R IWGKV RPHGNSG VRA+FRSNLP ++
Sbjct: 86 DFYAGKRCVYVYRAKKRTPIAGGPRGKKTKLRAIWGKVTRPHGNSGGVRARFRSNLPAQA 145
Query: 391 MGRKVRVFMYPSSI 432
MG ++RV +YPS I
Sbjct: 146 MGHRIRVMLYPSRI 159
>sptrnew|EAA17804|EAA17804 Ribosomal protein L35Ae, putative.
Length = 143
Score = 120 bits (300), Expect = 2e-26
Identities = 54/122 (44%), Positives = 80/122 (65%), Gaps = 4/122 (3%)
Frame = +1
Query: 79 RSCSVEMVKGRTGQRV----RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYC 246
+S ++K + G + RLY +G +LGYKRS+ NQ +L+ I VNT++ Y
Sbjct: 22 KSIKKVLIKNKKGNKKMKAPRLYEKGVILGYKRSQRNQDPNFTLLSIRNVNTRKHAQLYV 81
Query: 247 GKRMAYIYKAKTKSSGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPS 426
GKR+AY+Y+ G +CIWGKV R HGNSGVVRA+F +++PP++ G +VR+ +YPS
Sbjct: 82 GKRVAYVYRTNKHHDGVKIKCIWGKVCRTHGNSGVVRARFATHIPPQAFGNRVRILLYPS 141
Query: 427 SI 432
+I
Sbjct: 142 NI 143
>sw|P05744|R33A_YEAST 60S ribosomal protein L33-A (L37A) (YL37)
(RP47).
Length = 106
Score = 118 bits (295), Expect = 8e-26
Identities = 55/102 (53%), Positives = 73/102 (71%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKSSGTHYR 306
RLYV+G L Y+RSK SL++IEGV T +D +Y GKR+AY+Y+A + G+ R
Sbjct: 5 RLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIR 64
Query: 307 CIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
+WGKV R HGNSGVVRA FR+NLP ++ G VR+F+YPS+I
Sbjct: 65 VMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 106
>sw|P49180|R35A_CAEEL 60S ribosomal protein L35a.
Length = 124
Score = 117 bits (294), Expect = 1e-25
Identities = 56/108 (51%), Positives = 75/108 (69%), Gaps = 6/108 (5%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKA--KTKSSG-- 294
RLYV+ G+KR Q E TSL+++EGV KED +Y GKR+ Y+YKA KT +G
Sbjct: 17 RLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHT 76
Query: 295 --THYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
T R IWGK+ RPHGN+G VRAKF N+PP ++G+++RV +YPS+I
Sbjct: 77 VATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124
>sw|P41056|R33B_YEAST 60S ribosomal protein L33-B (L37B) (YL37)
(RP47).
Length = 106
Score = 116 bits (291), Expect = 2e-25
Identities = 54/102 (52%), Positives = 73/102 (71%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKSSGTHYR 306
RLYV+G L Y+RSK SL++IEGV T ++ +Y GKR+AY+Y+A + G+ R
Sbjct: 5 RLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGSKIR 64
Query: 307 CIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
+WGKV R HGNSGVVRA FR+NLP ++ G VR+F+YPS+I
Sbjct: 65 VMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 106
>sptr|Q86E43|Q86E43 Clone ZZZ247 mRNA sequence.
Length = 128
Score = 116 bits (290), Expect = 3e-25
Identities = 53/116 (45%), Positives = 78/116 (67%), Gaps = 6/116 (5%)
Frame = +1
Query: 103 KGRTGQRVRLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKT 282
K R + RLYV+ T GY+R NQ+E+T+L++I+GV ++ +Y GKR Y+Y+A+
Sbjct: 13 KQRLKRPGRLYVKATFTGYRRGLRNQHESTALLRIDGVTERKSTEFYLGKRCVYVYRAEK 72
Query: 283 KS------SGTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
K T R IWGK+ RPHGNSG+VRA+F+ NLP +MG+++RV +YPS +
Sbjct: 73 KKVFPRRQKPTKIRVIWGKIMRPHGNSGIVRARFKHNLPASAMGKRIRVMLYPSRV 128
>sptrnew|AAH53771|AAH53771 Hypothetical protein.
Length = 110
Score = 113 bits (282), Expect = 3e-24
Identities = 55/107 (51%), Positives = 73/107 (68%), Gaps = 5/107 (4%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKS-----S 291
RL+ + T GYKR NQ E T+L++IEGV +++ +Y GKR AY+YKAK +
Sbjct: 4 RLWCKATFAGYKRGLRNQTEHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGK 63
Query: 292 GTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
R IWGKV R HGNSG+VRAKFRSNLP +++G ++RV +YPS I
Sbjct: 64 PNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sw|P02434|R35A_XENLA 60S ribosomal protein L35a (L32).
Length = 110
Score = 113 bits (282), Expect = 3e-24
Identities = 55/107 (51%), Positives = 73/107 (68%), Gaps = 5/107 (4%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKS-----S 291
RL+ + T GYKR NQ E T+L++IEGV +++ +Y GKR AY+YKAK +
Sbjct: 4 RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGK 63
Query: 292 GTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
R IWGKV R HGNSG+VRAKFRSNLP +++G ++RV +YPS I
Sbjct: 64 PNRTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sw|Q9USX4|R33A_SCHPO 60S ribosomal protein L33-A (L37A).
Length = 108
Score = 112 bits (279), Expect = 6e-24
Identities = 51/102 (50%), Positives = 73/102 (71%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKSSGTHYR 306
RLYV+ L ++RSK + TSLV+IEG ++KE+ +Y GKR+ ++YK+ G+ R
Sbjct: 7 RLYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIR 66
Query: 307 CIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
IWG V+RPHGNSGVVRA+F NLPP++ G +RV +YPS++
Sbjct: 67 VIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108
>sptr|Q9DC85|Q9DC85 2810431L15Rik protein.
Length = 110
Score = 111 bits (277), Expect = 1e-23
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 5/107 (4%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKS-----S 291
RL+ + GYKR NQ E T+L++IEGV +++ +Y GKR AY+YKAK +
Sbjct: 4 RLWCKAIFAGYKRGLRNQRERTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 292 GTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
R IWGKV R HGNSG+VRAKFRSNLP +++G ++RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sw|Q90YT3|R35A_ICTPU 60S ribosomal protein L35a.
Length = 110
Score = 111 bits (277), Expect = 1e-23
Identities = 55/107 (51%), Positives = 75/107 (70%), Gaps = 5/107 (4%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAK--TKSSG-- 294
RL+ + GYKR NQ E T+L+++EGV ++ +V +Y GKR AY+YKAK T + G
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAKKTTVTPGGK 63
Query: 295 -THYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
R IWGKV R HGNSG+VRAKF SNLPP+++G ++RV +YPS +
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110
>sptrnew|AAH27223|AAH27223 Rpl35a protein.
Length = 110
Score = 110 bits (276), Expect = 1e-23
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 5/107 (4%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKS-----S 291
RL+ + GYKR NQ E T+L++IEGV +++ +Y GKR AY+YKAK +
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 292 GTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
R IWGKV R HGNSG+VRAKFRSNLP +++G ++RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sptrnew|BAC25818|BAC25818 10, 11 days embryo whole body cDNA, RIKEN
full-length enriched library, clone:2810006P03
product:ribosomal protein L35a, full insert sequence.
Length = 110
Score = 110 bits (276), Expect = 1e-23
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 5/107 (4%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKS-----S 291
RL+ + GYKR NQ E T+L++IEGV +++ +Y GKR AY+YKAK +
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 292 GTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
R IWGKV R HGNSG+VRAKFRSNLP +++G ++RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sptrnew|BAB27124|BAB27124 ES cells cDNA, RIKEN full-length enriched
library, clone:2410046L21 product:ribosomal protein
L35a, full insert sequence.
Length = 110
Score = 110 bits (276), Expect = 1e-23
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 5/107 (4%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKS-----S 291
RL+ + GYKR NQ E T+L++IEGV +++ +Y GKR AY+YKAK +
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 292 GTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
R IWGKV R HGNSG+VRAKFRSNLP +++G ++RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sptrnew|CAA76215|CAA76215 Ribosomal protein L35a.
Length = 110
Score = 110 bits (276), Expect = 1e-23
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 5/107 (4%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKS-----S 291
RL+ + GYKR NQ E T+L++IEGV +++ +Y GKR AY+YKAK +
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 292 GTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
R IWGKV R HGNSG+VRAKFRSNLP +++G ++RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sw|P04646|R35A_RAT 60S ribosomal protein L35a.
Length = 110
Score = 110 bits (276), Expect = 1e-23
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 5/107 (4%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKS-----S 291
RL+ + GYKR NQ E T+L++IEGV +++ +Y GKR AY+YKAK +
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 292 GTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
R IWGKV R HGNSG+VRAKFRSNLP +++G ++RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sptrnew|BAC21647|BAC21647 Ribosomal protein L35a.
Length = 110
Score = 110 bits (275), Expect = 2e-23
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 5/107 (4%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKS-----S 291
RL+ + GYKR NQ E T+L++IEGV +++ +Y GKR AY+YKAK +
Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 292 GTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
R IWGKV R HGNSG+VRAKFRSNLP +++G ++RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sw|P18077|R35A_HUMAN 60S ribosomal protein L35a.
Length = 110
Score = 110 bits (275), Expect = 2e-23
Identities = 54/107 (50%), Positives = 72/107 (67%), Gaps = 5/107 (4%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKS-----S 291
RL+ + GYKR NQ E T+L++IEGV +++ +Y GKR AY+YKAK +
Sbjct: 4 RLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 292 GTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
R IWGKV R HGNSG+VRAKFRSNLP +++G ++RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sw|O55142|R35A_MOUSE 60S ribosomal protein L35a.
Length = 110
Score = 109 bits (272), Expect = 4e-23
Identities = 53/107 (49%), Positives = 71/107 (66%), Gaps = 5/107 (4%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKS-----S 291
RL+ + GYKR NQ E T+L++IEGV +++ +Y GKR AY+YK K +
Sbjct: 4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKGKNNTVTPGGK 63
Query: 292 GTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
R IWGKV R HGNSG+VRAKFRSNLP +++G ++RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sptr|Q8BQV7|Q8BQV7 Ribosomal protein L35a.
Length = 110
Score = 108 bits (271), Expect = 5e-23
Identities = 53/107 (49%), Positives = 71/107 (66%), Gaps = 5/107 (4%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKS-----S 291
RL+ + GYKR N E T+L++IEGV +++ +Y GKR AY+YKAK +
Sbjct: 4 RLWCKAIFAGYKRGLRNHREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGK 63
Query: 292 GTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
R IWGKV R HGNSG+VRAKFRSNLP +++G ++RV +YPS I
Sbjct: 64 PNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sw|Q9USG6|R33B_SCHPO 60S ribosomal protein L33-B (L37B).
Length = 108
Score = 108 bits (270), Expect = 7e-23
Identities = 50/102 (49%), Positives = 71/102 (69%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKSSGTHYR 306
RLYV+ L ++RSK + TS+V+IEG ++KE+ +Y GKR+ Y+YK+ G+ R
Sbjct: 7 RLYVKAKHLSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIR 66
Query: 307 CIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
IWG +ARPHGNSG VRA+F NLP ++ G +RV +YPS+I
Sbjct: 67 VIWGTIARPHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108
>sptr|Q9VNB9|Q9VNB9 CG2099 protein (RH44960p) (RE17737p).
Length = 157
Score = 105 bits (263), Expect = 4e-22
Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 7/109 (6%)
Frame = +1
Query: 127 RLYVRGTVLGYKRSKSNQYETTSLVQIEGVNTKEDVAWYCGKRMAYIYKAKTKSS----- 291
RL+ + GYKR NQ+E ++++IEG KE ++Y GKR Y+YKA+TK
Sbjct: 49 RLFAKAVFTGYKRGLRNQHENQAILKIEGARRKEHGSFYVGKRCVYVYKAETKKCVPQHP 108
Query: 292 --GTHYRCIWGKVARPHGNSGVVRAKFRSNLPPESMGRKVRVFMYPSSI 432
T R +WGKV R HGN+G VRA+F NLP +MG ++R+ +YPS I
Sbjct: 109 ERKTRVRAVWGKVTRIHGNTGAVRARFNRNLPGHAMGHRIRIMLYPSRI 157
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,402,615
Number of Sequences: 1272877
Number of extensions: 9006000
Number of successful extensions: 23906
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23865
length of database: 406,886,216
effective HSP length: 119
effective length of database: 255,413,853
effective search space used: 29628006948
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)