BLASTX 2.2.6 [Apr-09-2003]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.160
(878 letters)
Database: /db/trembl-ebi/tmp/swall
1,272,877 sequences; 406,886,216 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sptr|Q8H2H9|Q8H2H9 P0676F10.14 protein. 260 2e-68
sptr|Q9FP19|Q9FP19 P0038C05.4 protein. 260 2e-68
sptr|Q9LEY9|Q9LEY9 Nhp2-like protein (AT5g08180/T22D6_120). 211 1e-53
sw|P32495|NHP2_YEAST High mobility group-like nuclear protein 2. 147 2e-34
sw|Q9P7H0|NHP2_SCHPO High mobility group-like nuclear protein 2 ... 138 1e-31
sptr|Q8I7X7|Q8I7X7 Nucleolar protein family A member 2. 122 5e-27
sptr|Q95UQ5|Q95UQ5 Nucleolar protein family A member 2 (Fragment). 120 2e-26
sptr|Q9CRB2|Q9CRB2 2410130M07Rik protein (RIKEN cDNA 2410130M07 ... 118 1e-25
sptr|Q9XXD4|Q9XXD4 Y48A6B.3 protein. 114 2e-24
sptr|Q9NX24|Q9NX24 NHP2 protein (Nucleolar protein family A, mem... 112 7e-24
sptrnew|EAA42961|EAA42961 GLP_170_82204_82719. 108 1e-22
sptr|Q9V3U2|Q9V3U2 CG5258 protein. 108 1e-22
sptrnew|EAA00120|EAA00120 EbiP9119 (Fragment). 100 4e-20
sptrnew|EAA31439|EAA31439 Hypothetical protein. 94 2e-18
sptr|Q871J2|Q871J2 Related to high mobility group-like protein N... 94 2e-18
sptr|Q9GTN8|Q9GTN8 NHP2/RS6-like protein. 91 2e-17
sptr|Q9P095|Q9P095 HSPC286 (Fragment). 91 3e-17
sptr|Q9GP37|Q9GP37 Putative high mobility group-like nuclear pro... 81 2e-14
sptr|O74690|O74690 RS6/L7A ribosomal protein homolog. 81 2e-14
sptr|Q7ZV23|Q7ZV23 Similar to NHP2 non-histone chromosome protei... 80 4e-14
sptr|Q8IIC4|Q8IIC4 High mobility group-like protein NHP2, putative. 80 4e-14
sw|Q21568|NHPX_CAEEL NHP2/L7aE family protein YEL026W homolog. 80 5e-14
sptr|Q7ZU93|Q7ZU93 Similar to NHP2 non-histone chromosome protei... 79 8e-14
sptr|Q7ZWY8|Q7ZWY8 Similar to NHP2 non-histone chromosome protei... 79 8e-14
sptrnew|AAH54450|AAH54450 Hypothetical protein. 78 2e-13
sptr|Q9D0T1|Q9D0T1 NHP2-like protein 1 (High mobility group-like... 78 2e-13
sw|P55769|NHPX_HUMAN NHP2-like protein 1 (High mobility group-li... 78 2e-13
sw|Q971C9|RL7A_SULTO 50S ribosomal protein L7Ae. 78 2e-13
sw|P39990|NHPX_YEAST NHP2/L7aE family protein YEL026W. 78 2e-13
sptrnew|EAA32181|EAA32181 Probable 13 kD U4/U6.U5 snRNP associat... 77 2e-13
>sptr|Q8H2H9|Q8H2H9 P0676F10.14 protein.
Length = 150
Score = 260 bits (664), Expect = 2e-68
Identities = 131/150 (87%), Positives = 140/150 (93%), Gaps = 1/150 (0%)
Frame = -3
Query: 828 MGSDTETEKKAS-VALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGN 652
MGSDTE EKK + VAL IAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRG
Sbjct: 1 MGSDTEAEKKKTPVALAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGQ 60
Query: 651 KGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNK 472
KGLC+IAGNISPIDVITHVPILCEEAN+PYVYVPSKEDLATAGTTKRPTCCVLVLTKP K
Sbjct: 61 KGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTKPAK 120
Query: 471 GELSGEVKDKLKSDYDQVVTEVAEATSAMF 382
GEL +VK+KLK+DYDQV++EVAE TS+MF
Sbjct: 121 GELEEDVKEKLKTDYDQVMSEVAEVTSSMF 150
>sptr|Q9FP19|Q9FP19 P0038C05.4 protein.
Length = 150
Score = 260 bits (664), Expect = 2e-68
Identities = 131/150 (87%), Positives = 140/150 (93%), Gaps = 1/150 (0%)
Frame = -3
Query: 828 MGSDTETEKKAS-VALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGN 652
MGSDTE EKK + VAL IAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRG
Sbjct: 1 MGSDTEAEKKKTPVALAPIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGQ 60
Query: 651 KGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNK 472
KGLC+IAGNISPIDVITHVPILCEEAN+PYVYVPSKEDLATAGTTKRPTCCVLVLTKP K
Sbjct: 61 KGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTKPAK 120
Query: 471 GELSGEVKDKLKSDYDQVVTEVAEATSAMF 382
GEL +VK+KLK+DYDQV++EVAE TS+MF
Sbjct: 121 GELEEDVKEKLKTDYDQVMSEVAEVTSSMF 150
>sptr|Q9LEY9|Q9LEY9 Nhp2-like protein (AT5g08180/T22D6_120).
Length = 156
Score = 211 bits (536), Expect = 1e-53
Identities = 107/155 (69%), Positives = 124/155 (80%), Gaps = 7/155 (4%)
Frame = -3
Query: 828 MGSDTETEK-------KASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVK 670
MGSDTE EK K ++ L IAKPLAGKKL KRT KL+++A+ KCLKRGVKEVVK
Sbjct: 1 MGSDTEAEKSIQKEKKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVK 60
Query: 669 SIRRGNKGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLV 490
SIRRG KGLCVIAGNISPIDVITH+PILCEEA VPYVYVPSKEDLA AG TKRPTCCVLV
Sbjct: 61 SIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLV 120
Query: 489 LTKPNKGELSGEVKDKLKSDYDQVVTEVAEATSAM 385
+ KP KG+L+ E KLK+DY+QV ++ E +++
Sbjct: 121 MLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155
>sw|P32495|NHP2_YEAST High mobility group-like nuclear protein 2.
Length = 173
Score = 147 bits (370), Expect = 2e-34
Identities = 74/157 (47%), Positives = 107/157 (68%), Gaps = 12/157 (7%)
Frame = -3
Query: 840 AAAAMGSDTETEKKASV------------ALMSIAKPLAGKKLCKRTLKLVRRASEAKCL 697
+A MG D + K++ A++ AKPLA KKL K+ LK V++AS+AK +
Sbjct: 14 SAVKMGKDNKEHKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNV 73
Query: 696 KRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTT 517
KRGVKEVVK++R+G KGL VIAG+ISP DVI+H+P+LCE+ +VPY+++PSK+DL AG T
Sbjct: 74 KRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGAT 133
Query: 516 KRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQVVTEV 406
KRPT V ++ NK + +++ K +++VV EV
Sbjct: 134 KRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEV 170
>sw|Q9P7H0|NHP2_SCHPO High mobility group-like nuclear protein 2
(P17-nhp2).
Length = 154
Score = 138 bits (347), Expect = 1e-31
Identities = 67/128 (52%), Positives = 96/128 (75%)
Frame = -3
Query: 789 ALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPID 610
ALM IAKPLA KKL K+ +K V++AS+ K + RGVKEVVK++R+G KGL ++AG+ISP+D
Sbjct: 24 ALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMD 83
Query: 609 VITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSD 430
VI+H+P+LCE+ NVPY+Y SKE L A TKRPT CV+++ K ++S ++ K
Sbjct: 84 VISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMS--KVEEYKES 141
Query: 429 YDQVVTEV 406
Y++++ EV
Sbjct: 142 YEEIIKEV 149
>sptr|Q8I7X7|Q8I7X7 Nucleolar protein family A member 2.
Length = 159
Score = 122 bits (307), Expect = 5e-27
Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 4/158 (2%)
Frame = -3
Query: 867 KRPRSHRSKAAAAMGSDTETEKKASVALMS----IAKPLAGKKLCKRTLKLVRRASEAKC 700
K+ ++ + G + E ++A L + IA PLA +KL KR K V++AS+ K
Sbjct: 6 KKDKTEEKEEHEESGGNKEDRERAYEVLATRVNPIASPLAARKLTKRLYKTVKKASKEKN 65
Query: 699 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGT 520
+++G+++V K I++G +G+ +IAG+ +PI+V H+P++CE+A +PY YVP+K+DL A
Sbjct: 66 IRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAG 125
Query: 519 TKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQVVTEV 406
+KRPTCCVL+ KPN + +S YD+ +T+V
Sbjct: 126 SKRPTCCVLL--KPN---------ESYQSSYDECLTDV 152
>sptr|Q95UQ5|Q95UQ5 Nucleolar protein family A member 2 (Fragment).
Length = 126
Score = 120 bits (301), Expect = 2e-26
Identities = 56/124 (45%), Positives = 88/124 (70%)
Frame = -3
Query: 777 IAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITH 598
IA PLA +KL KR K V++AS+ K +++G+++V K I++G +G+ +IAG+ +PI+V H
Sbjct: 7 IASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCH 66
Query: 597 VPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQV 418
+P++CE+A +PY YVP+K+DL A +KRPTCCVL+ KPN + +S YD+
Sbjct: 67 LPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLL--KPN---------ESYQSSYDEC 115
Query: 417 VTEV 406
+T+V
Sbjct: 116 LTDV 119
>sptr|Q9CRB2|Q9CRB2 2410130M07Rik protein (RIKEN cDNA 2410130M07
gene).
Length = 153
Score = 118 bits (295), Expect = 1e-25
Identities = 61/147 (41%), Positives = 95/147 (64%)
Frame = -3
Query: 846 SKAAAAMGSDTETEKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKS 667
S+A A S+ T K+ V L IA+PLA ++L ++ K +++A + K ++RGVKEV K
Sbjct: 11 SEAQAEGCSEERTYKELLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKF 70
Query: 666 IRRGNKGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVL 487
+ +G KG+ V+AG+ PI+V H+P+LCE+ N+PYVY+PSK DL A +KRPTC ++V
Sbjct: 71 VNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMV- 129
Query: 486 TKPNKGELSGEVKDKLKSDYDQVVTEV 406
KP+ ++ + YD+ + EV
Sbjct: 130 -KPH---------EEYQETYDKCLEEV 146
>sptr|Q9XXD4|Q9XXD4 Y48A6B.3 protein.
Length = 163
Score = 114 bits (285), Expect = 2e-24
Identities = 62/146 (42%), Positives = 90/146 (61%), Gaps = 7/146 (4%)
Frame = -3
Query: 852 HRSKAAAAMGSDTE--TEKKASVALMS----IAKPLAGKKLCKRTLKLVRRASEA-KCLK 694
+ S + A G T TEK AL IA+PLA +KL K+ KL+++AS K L+
Sbjct: 11 NESTVSEANGDATAPTTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLR 70
Query: 693 RGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTK 514
G+K+V K +RR KG+C++AGN+SPIDV +H+P +CEE +PYVY+PS+E L A +
Sbjct: 71 EGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHR 130
Query: 513 RPTCCVLVLTKPNKGELSGEVKDKLK 436
RP+ + V + EL EV + L+
Sbjct: 131 RPSILIFVKPSGDFKELYDEVAEALR 156
>sptr|Q9NX24|Q9NX24 NHP2 protein (Nucleolar protein family A, member
2) (H/ACA small nucleolar RNPs) (Likely homolog of yeast
Nhp2, component of the H/ACA snoRNP, hypothetical
protein FLJ20479) (Small nucleolar RNA binding- like
protein NHP2).
Length = 153
Score = 112 bits (280), Expect = 7e-24
Identities = 57/146 (39%), Positives = 92/146 (63%)
Frame = -3
Query: 843 KAAAAMGSDTETEKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSI 664
+A A S T ++ V IA+PLA ++L ++ K +++A + K ++RGVKEV K +
Sbjct: 12 EAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFV 71
Query: 663 RRGNKGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLT 484
+G KG+ V+AG+ PI+V H+P++CE+ N+PYVY+PSK DL A +KRPTC ++V
Sbjct: 72 NKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV-- 129
Query: 483 KPNKGELSGEVKDKLKSDYDQVVTEV 406
KP+ ++ + YD+ + EV
Sbjct: 130 KPH---------EEYQEAYDECLEEV 146
>sptrnew|EAA42961|EAA42961 GLP_170_82204_82719.
Length = 171
Score = 108 bits (270), Expect = 1e-22
Identities = 66/147 (44%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Frame = -3
Query: 855 SHRSKAAAAMG-SDTETEKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKE 679
SH A AAM S T +E K+SV S+ P+A +K+ + KL+ RA EAK L RG KE
Sbjct: 15 SHFKIALAAMSHSVTSSEMKSSV---SVTFPMAEEKVEHKASKLIVRAREAKTLARGTKE 71
Query: 678 VVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLA-TAGTTKRPTC 502
V K IRRG KG+C+IA + PI V H+P+LCE+ +PY ++ SK+ LA AGTT T
Sbjct: 72 VAKYIRRGRKGICIIAADTHPIYVFAHLPVLCEQNGIPYFFIKSKKALAEAAGTT--GTA 129
Query: 501 CVLVLTKPNKGELSGEVKDKLKSDYDQ 421
V++L +P+K GE + K Y +
Sbjct: 130 SVVLLQEPSKDASDGEDRKTYKKIYQK 156
>sptr|Q9V3U2|Q9V3U2 CG5258 protein.
Length = 160
Score = 108 bits (269), Expect = 1e-22
Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 6/151 (3%)
Frame = -3
Query: 867 KRPRSHRSKAAAAMGSDTETEKKAS-----VALMSIAKPLAGKKLCKRTLKLVRRASEAK 703
K RS + + D +++ S + + +IAKP+AGKKL K+ KLV++A + K
Sbjct: 5 KVERSEDADESVVASGDVTIKEEESYDDKLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHK 64
Query: 702 C-LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATA 526
L+ G+K+V +R+G G+C+ AG+++P+D++ H+P +CEE +PY Y PS+ DL A
Sbjct: 65 TFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAA 124
Query: 525 GTTKRPTCCVLVLTKPNKGELSGEVKDKLKS 433
KR T +LV +L EVK++L +
Sbjct: 125 MGVKRGTVALLVRQNEEYKDLYDEVKEELSA 155
>sptrnew|EAA00120|EAA00120 EbiP9119 (Fragment).
Length = 156
Score = 99.8 bits (247), Expect = 4e-20
Identities = 47/117 (40%), Positives = 80/117 (68%), Gaps = 1/117 (0%)
Frame = -3
Query: 780 SIAKPLAGKKLCKRTLKLVRRASEAK-CLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVI 604
+IA+P+A KKL K+ KL+ +AS+ K L+ G+K+V +R+G GL V AG+++PI+++
Sbjct: 36 AIAQPMASKKLTKKVHKLIEKASKQKNFLRNGLKDVQIRLRKGETGLVVFAGDVTPIEIM 95
Query: 603 THVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKS 433
H+P +CEE N+PY Y+PS++DL A KR T +L+ P+ ++ ++K +L +
Sbjct: 96 CHLPAVCEEKNIPYCYMPSRKDLGAAMGVKRGTVAMLIREHPDYQDMYDKLKVELST 152
>sptrnew|EAA31439|EAA31439 Hypothetical protein.
Length = 242
Score = 94.4 bits (233), Expect = 2e-18
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 11/133 (8%)
Frame = -3
Query: 819 DTETEKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRR------ 658
D E K + L+ A PLA K K+ KL+++ ++ K + RGVKE K+I++
Sbjct: 62 DPEDVVKTAEDLVPFALPLADDKTHKKIYKLIKKGAKLKSIHRGVKECEKAIKKCPLRTA 121
Query: 657 -----GNKGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVL 493
GL +IAG+ISP+DVI H PILCEE VPY+Y+ S+ DL A TKR T +
Sbjct: 122 ASPPADAPGLVIIAGDISPMDVIMHFPILCEEHGVPYLYIRSRADLGVAACTKRATS--V 179
Query: 492 VLTKPNKGELSGE 454
V+ KP + SG+
Sbjct: 180 VMLKPEGKKSSGK 192
>sptr|Q871J2|Q871J2 Related to high mobility group-like protein
NHP2.
Length = 242
Score = 94.4 bits (233), Expect = 2e-18
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 11/133 (8%)
Frame = -3
Query: 819 DTETEKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRR------ 658
D E K + L+ A PLA K K+ KL+++ ++ K + RGVKE K+I++
Sbjct: 62 DPEDVVKTAEDLVPFALPLADDKTHKKIYKLIKKGAKLKSIHRGVKECEKAIKKCPLRTA 121
Query: 657 -----GNKGLCVIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVL 493
GL +IAG+ISP+DVI H PILCEE VPY+Y+ S+ DL A TKR T +
Sbjct: 122 ASPPADAPGLVIIAGDISPMDVIMHFPILCEEHGVPYLYIRSRADLGVAACTKRATS--V 179
Query: 492 VLTKPNKGELSGE 454
V+ KP + SG+
Sbjct: 180 VMLKPEGKKSSGK 192
>sptr|Q9GTN8|Q9GTN8 NHP2/RS6-like protein.
Length = 126
Score = 91.3 bits (225), Expect = 2e-17
Identities = 43/100 (43%), Positives = 63/100 (63%)
Frame = -3
Query: 774 AKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHV 595
A PLAG +L + L +V+ AS AK +K+G E K++ RG L V+AG+ +PI+++ H+
Sbjct: 9 AFPLAGDRLTQTILDIVQEASNAKMIKKGANEATKALNRGIADLIVLAGDTNPIEILLHL 68
Query: 594 PILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPN 475
P+LCE+ NVPYV+VPSK L A R + +L N
Sbjct: 69 PLLCEDKNVPYVFVPSKTALGRAAQVSRNAVALAILQMEN 108
>sptr|Q9P095|Q9P095 HSPC286 (Fragment).
Length = 142
Score = 90.5 bits (223), Expect = 3e-17
Identities = 38/86 (44%), Positives = 60/86 (69%)
Frame = -3
Query: 765 LAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPIL 586
LA ++L ++ K +++A + K ++RGVKEV K + +G KG+ V+AG+ PI+V H+P++
Sbjct: 55 LASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVM 114
Query: 585 CEEANVPYVYVPSKEDLATAGTTKRP 508
CE+ N+PYVY+PSK DL A P
Sbjct: 115 CEDRNLPYVYIPSKTDLGAAAVPSAP 140
>sptr|Q9GP37|Q9GP37 Putative high mobility group-like nuclear
protein 2.
Length = 127
Score = 81.3 bits (199), Expect = 2e-14
Identities = 34/95 (35%), Positives = 61/95 (64%)
Frame = -3
Query: 774 AKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHV 595
A PLA +L + ++L+++A+ K LK+G E K++ RG V+A + +PI+++ H+
Sbjct: 9 AYPLASPELTGKIIELLKQAASYKQLKKGANEATKALNRGKAEFVVMAADTNPIEIVLHI 68
Query: 594 PILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLV 490
P++CE+ NVPY+++PS++ L A RP +V
Sbjct: 69 PLVCEDKNVPYIFIPSQQALGRACGVSRPVIAAVV 103
>sptr|O74690|O74690 RS6/L7A ribosomal protein homolog.
Length = 125
Score = 80.9 bits (198), Expect = 2e-14
Identities = 40/97 (41%), Positives = 58/97 (59%)
Frame = -3
Query: 774 AKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHV 595
A PLA L ++ L LV++AS K L++G E K++ RG V+A + PI+++ H+
Sbjct: 7 AFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHL 66
Query: 594 PILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLT 484
P+LCE+ NVPYV+VPSK L A RP + T
Sbjct: 67 PLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITT 103
>sptr|Q7ZV23|Q7ZV23 Similar to NHP2 non-histone chromosome protein
2-like 1 (S. cerevisiae).
Length = 128
Score = 80.1 bits (196), Expect = 4e-14
Identities = 41/98 (41%), Positives = 57/98 (58%)
Frame = -3
Query: 774 AKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHV 595
A PLA L K L LV++AS K L++G E K++ RG V+A + P+++I H+
Sbjct: 10 AYPLADATLSKTILDLVQQASNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHL 69
Query: 594 PILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTK 481
P+LCE+ NVPYV+V SK+ L A RP V K
Sbjct: 70 PLLCEDKNVPYVFVRSKQALGRACGVSRPVIATSVTIK 107
>sptr|Q8IIC4|Q8IIC4 High mobility group-like protein NHP2, putative.
Length = 145
Score = 80.1 bits (196), Expect = 4e-14
Identities = 38/96 (39%), Positives = 59/96 (61%)
Frame = -3
Query: 768 PLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPI 589
PLA +L + L +++RA+ + LKRG E VKS+ +G L V+A + P+++I+H+P+
Sbjct: 29 PLASPELTNQILDVIQRATVYRQLKRGANEAVKSLHKGISELVVLAADAKPLEIISHIPL 88
Query: 588 LCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTK 481
+CE+ N PYVYV SK L A R ++TK
Sbjct: 89 VCEDKNTPYVYVRSKMALGRACGISRSVIATSIVTK 124
>sw|Q21568|NHPX_CAEEL NHP2/L7aE family protein YEL026W homolog.
Length = 128
Score = 79.7 bits (195), Expect = 5e-14
Identities = 41/120 (34%), Positives = 71/120 (59%)
Frame = -3
Query: 774 AKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHV 595
A PLA L ++ + LV++A K LK+G E K++ RG + V+A + P++++ H+
Sbjct: 10 AFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHL 69
Query: 594 PILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQVV 415
P+LCE+ NVPYV+V SK L A RP + T+ +L +++ K+K D ++++
Sbjct: 70 PLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASI-TQNEGSQLKSQIQ-KIKEDVEKLL 127
>sptr|Q7ZU93|Q7ZU93 Similar to NHP2 non-histone chromosome protein
2-like 1 (S. cerevisiae).
Length = 128
Score = 79.0 bits (193), Expect = 8e-14
Identities = 40/98 (40%), Positives = 57/98 (58%)
Frame = -3
Query: 774 AKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHV 595
A PLA L K L LV++A+ K L++G E K++ RG V+A + P+++I H+
Sbjct: 10 AYPLADATLSKTILDLVQQAANYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHL 69
Query: 594 PILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTK 481
P+LCE+ NVPYV+V SK+ L A RP V K
Sbjct: 70 PLLCEDKNVPYVFVRSKQALGRACGVSRPVIATSVTIK 107
>sptr|Q7ZWY8|Q7ZWY8 Similar to NHP2 non-histone chromosome protein
2-like 1 (S. cerevisiae).
Length = 128
Score = 79.0 bits (193), Expect = 8e-14
Identities = 40/97 (41%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Frame = -3
Query: 774 AKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHV 595
A PLA +L K L LV++A+ K L++G E K++ RG V+A + P+++I H+
Sbjct: 10 AYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHL 69
Query: 594 PILCEEANVPYVYVPSKEDLATAGTTKRP--TCCVLV 490
P+LCE+ NVPYV+V SK+ L A RP +C V +
Sbjct: 70 PLLCEDKNVPYVFVRSKQALGRACGVSRPVISCSVTI 106
>sptrnew|AAH54450|AAH54450 Hypothetical protein.
Length = 128
Score = 77.8 bits (190), Expect = 2e-13
Identities = 39/98 (39%), Positives = 57/98 (58%)
Frame = -3
Query: 774 AKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHV 595
A PLA L K+ L LV+++ K L++G E K++ RG V+A + P+++I H+
Sbjct: 10 AYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHL 69
Query: 594 PILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTK 481
P+LCE+ NVPYV+V SK+ L A RP V K
Sbjct: 70 PLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107
>sptr|Q9D0T1|Q9D0T1 NHP2-like protein 1 (High mobility group-like
nuclear protein 2 homolog 1) (Sperm specific antigen 1)
(Fertilization antigen 1) (FA- 1).
Length = 128
Score = 77.8 bits (190), Expect = 2e-13
Identities = 39/98 (39%), Positives = 57/98 (58%)
Frame = -3
Query: 774 AKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHV 595
A PLA L K+ L LV+++ K L++G E K++ RG V+A + P+++I H+
Sbjct: 10 AYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHL 69
Query: 594 PILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTK 481
P+LCE+ NVPYV+V SK+ L A RP V K
Sbjct: 70 PLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107
>sw|P55769|NHPX_HUMAN NHP2-like protein 1 (High mobility group-like
nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5
kDa protein) (OTK27).
Length = 128
Score = 77.8 bits (190), Expect = 2e-13
Identities = 39/98 (39%), Positives = 57/98 (58%)
Frame = -3
Query: 774 AKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHV 595
A PLA L K+ L LV+++ K L++G E K++ RG V+A + P+++I H+
Sbjct: 10 AYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHL 69
Query: 594 PILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTK 481
P+LCE+ NVPYV+V SK+ L A RP V K
Sbjct: 70 PLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIK 107
>sw|Q971C9|RL7A_SULTO 50S ribosomal protein L7Ae.
Length = 126
Score = 77.8 bits (190), Expect = 2e-13
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = -3
Query: 750 LCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEAN 571
L + L VR+A E+ +K+G E K++ RG L VIA ++ P +++ H+P+LCEE
Sbjct: 15 LANKVLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPEEIVAHLPLLCEEKK 74
Query: 570 VPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELS-GEVKDKLKSDYDQVVTEVAE 400
+PYVYVPSK+ L A C L + + + GE KD L D++V V E
Sbjct: 75 IPYVYVPSKKALGEA--------CGLQVAAASAAIIDPGEAKDLL----DEIVKRVEE 120
>sw|P39990|NHPX_YEAST NHP2/L7aE family protein YEL026W.
Length = 126
Score = 77.8 bits (190), Expect = 2e-13
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Frame = -3
Query: 774 AKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHV 595
A PLA L ++ L +V++A+ + LK+G E K++ RG ++A + PI+++ H+
Sbjct: 8 AFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHL 67
Query: 594 PILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSG--EVKDKLKS 433
P+LCE+ NVPYV+VPS+ L A RP + T + VKDK+++
Sbjct: 68 PLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIET 123
>sptrnew|EAA32181|EAA32181 Probable 13 kD U4/U6.U5 snRNP associate
protein.
Length = 128
Score = 77.4 bits (189), Expect = 2e-13
Identities = 38/101 (37%), Positives = 58/101 (57%)
Frame = -3
Query: 750 LCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEAN 571
L + L V++AS + LK+G E KS+ RG L ++A + P+ ++ H+P+LCE+ N
Sbjct: 18 LVQELLDCVQQASHYRQLKKGANEATKSVSRGTSELVILAADTQPLSIVLHIPLLCEDKN 77
Query: 570 VPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVK 448
VPYVYVPSK L A R V LT +L+ +++
Sbjct: 78 VPYVYVPSKTALGRACGVSRSVIAV-SLTSNEASDLNSKIR 117
Database: /db/trembl-ebi/tmp/swall
Posted date: Sep 26, 2003 8:29 PM
Number of letters in database: 406,886,216
Number of sequences in database: 1,272,877
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,964,498
Number of Sequences: 1272877
Number of extensions: 12724889
Number of successful extensions: 36380
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36360
length of database: 406,886,216
effective HSP length: 122
effective length of database: 251,595,222
effective search space used: 42771187740
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)